Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2185 and PfGW456L13_2186 are separated by 13 nucleotides PfGW456L13_2186 and PfGW456L13_2187 are separated by 3 nucleotides
PfGW456L13_2185 - putative colanic acid biosynthesis glycosyl transferase, at 2,395,969 to 2,397,183
_2185
PfGW456L13_2186 - UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-), at 2,397,197 to 2,398,234
_2186
PfGW456L13_2187 - WbjC, at 2,398,238 to 2,399,356
_2187
Position (kb)
2397
2398
2399 Strain fitness (log2 ratio)
-2
-1
0
1 at 2396.199 kb on + strand, within PfGW456L13_2185 at 2396.200 kb on - strand, within PfGW456L13_2185 at 2396.291 kb on + strand, within PfGW456L13_2185 at 2396.302 kb on - strand, within PfGW456L13_2185 at 2396.350 kb on + strand, within PfGW456L13_2185 at 2396.698 kb on - strand, within PfGW456L13_2185 at 2396.827 kb on + strand, within PfGW456L13_2185 at 2396.828 kb on - strand, within PfGW456L13_2185 at 2396.855 kb on + strand, within PfGW456L13_2185 at 2397.181 kb on + strand at 2397.214 kb on + strand at 2397.256 kb on + strand at 2397.525 kb on + strand, within PfGW456L13_2186 at 2397.540 kb on + strand, within PfGW456L13_2186 at 2397.561 kb on + strand, within PfGW456L13_2186 at 2397.574 kb on + strand, within PfGW456L13_2186 at 2397.612 kb on + strand, within PfGW456L13_2186 at 2397.664 kb on + strand, within PfGW456L13_2186 at 2397.682 kb on + strand, within PfGW456L13_2186 at 2397.756 kb on + strand, within PfGW456L13_2186 at 2397.756 kb on + strand, within PfGW456L13_2186 at 2397.757 kb on - strand, within PfGW456L13_2186 at 2397.831 kb on - strand, within PfGW456L13_2186 at 2397.897 kb on + strand, within PfGW456L13_2186 at 2397.925 kb on + strand, within PfGW456L13_2186 at 2397.925 kb on + strand, within PfGW456L13_2186 at 2398.034 kb on + strand, within PfGW456L13_2186 at 2398.070 kb on + strand, within PfGW456L13_2186
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 2,396,199 + PfGW456L13_2185 0.19 -0.4 2,396,200 - PfGW456L13_2185 0.19 -0.7 2,396,291 + PfGW456L13_2185 0.27 +0.9 2,396,302 - PfGW456L13_2185 0.27 +0.9 2,396,350 + PfGW456L13_2185 0.31 -0.2 2,396,698 - PfGW456L13_2185 0.60 +0.6 2,396,827 + PfGW456L13_2185 0.71 -0.9 2,396,828 - PfGW456L13_2185 0.71 -1.4 2,396,855 + PfGW456L13_2185 0.73 -2.4 2,397,181 + +0.5 2,397,214 + +0.5 2,397,256 + -0.5 2,397,525 + PfGW456L13_2186 0.32 -1.3 2,397,540 + PfGW456L13_2186 0.33 -2.0 2,397,561 + PfGW456L13_2186 0.35 -1.3 2,397,574 + PfGW456L13_2186 0.36 +0.5 2,397,612 + PfGW456L13_2186 0.40 -2.6 2,397,664 + PfGW456L13_2186 0.45 -0.9 2,397,682 + PfGW456L13_2186 0.47 +1.1 2,397,756 + PfGW456L13_2186 0.54 +0.2 2,397,756 + PfGW456L13_2186 0.54 -0.7 2,397,757 - PfGW456L13_2186 0.54 +1.1 2,397,831 - PfGW456L13_2186 0.61 -2.3 2,397,897 + PfGW456L13_2186 0.67 -1.0 2,397,925 + PfGW456L13_2186 0.70 +0.1 2,397,925 + PfGW456L13_2186 0.70 +0.3 2,398,034 + PfGW456L13_2186 0.81 +0.7 2,398,070 + PfGW456L13_2186 0.84 +0.9
Or see this region's nucleotide sequence