Experiment: Cephalothin 3 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_2105 and PfGW456L13_2106 are separated by 196 nucleotides PfGW456L13_2106 and PfGW456L13_2107 are separated by 145 nucleotides PfGW456L13_2107 and PfGW456L13_2108 overlap by 1 nucleotides PfGW456L13_2108 and PfGW456L13_2109 are separated by 3 nucleotides
PfGW456L13_2105 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 2,310,674 to 2,311,414
_2105
PfGW456L13_2106 - Acyl carrier protein, at 2,311,611 to 2,311,847
_2106
PfGW456L13_2107 - 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179), at 2,311,993 to 2,313,201
_2107
PfGW456L13_2108 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 2,313,201 to 2,314,016
_2108
PfGW456L13_2109 - FIG004453: protein YceG like, at 2,314,020 to 2,315,252
_2109
Position (kb)
2311
2312
2313
2314 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.406 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.412 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.449 kb on + strand at 2311.472 kb on + strand at 2311.472 kb on + strand at 2311.485 kb on + strand at 2311.485 kb on + strand at 2311.485 kb on + strand at 2311.485 kb on + strand at 2311.491 kb on + strand at 2311.491 kb on + strand at 2311.553 kb on + strand at 2311.553 kb on + strand at 2311.555 kb on + strand at 2311.561 kb on + strand at 2311.561 kb on + strand at 2311.845 kb on + strand at 2311.848 kb on + strand at 2311.915 kb on + strand at 2311.976 kb on + strand at 2311.976 kb on + strand at 2311.992 kb on + strand at 2311.992 kb on + strand at 2311.993 kb on - strand at 2312.092 kb on + strand at 2312.140 kb on + strand, within PfGW456L13_2107 at 2312.140 kb on + strand, within PfGW456L13_2107 at 2312.141 kb on - strand, within PfGW456L13_2107 at 2312.379 kb on + strand, within PfGW456L13_2107 at 2312.428 kb on + strand, within PfGW456L13_2107 at 2312.428 kb on + strand, within PfGW456L13_2107 at 2312.429 kb on - strand, within PfGW456L13_2107 at 2312.448 kb on + strand, within PfGW456L13_2107 at 2312.449 kb on - strand, within PfGW456L13_2107 at 2312.494 kb on + strand, within PfGW456L13_2107 at 2312.494 kb on + strand, within PfGW456L13_2107 at 2312.648 kb on + strand, within PfGW456L13_2107 at 2312.648 kb on + strand, within PfGW456L13_2107 at 2312.676 kb on - strand, within PfGW456L13_2107 at 2312.719 kb on + strand, within PfGW456L13_2107 at 2312.719 kb on + strand, within PfGW456L13_2107 at 2312.939 kb on - strand, within PfGW456L13_2107 at 2313.264 kb on + strand at 2313.265 kb on - strand at 2313.408 kb on + strand, within PfGW456L13_2108 at 2313.408 kb on + strand, within PfGW456L13_2108 at 2313.535 kb on - strand, within PfGW456L13_2108 at 2313.604 kb on + strand, within PfGW456L13_2108 at 2313.814 kb on + strand, within PfGW456L13_2108 at 2313.814 kb on + strand, within PfGW456L13_2108 at 2313.815 kb on - strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.915 kb on + strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.916 kb on - strand, within PfGW456L13_2108 at 2313.939 kb on + strand at 2313.939 kb on + strand at 2314.017 kb on + strand at 2314.017 kb on + strand at 2314.017 kb on + strand at 2314.028 kb on + strand at 2314.114 kb on + strand at 2314.130 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml remove 2,311,406 + -0.8 2,311,406 + -0.2 2,311,406 + -1.1 2,311,406 + +0.3 2,311,406 + -0.0 2,311,406 + -0.6 2,311,406 + -0.3 2,311,406 + -1.0 2,311,406 + +0.1 2,311,406 + -0.1 2,311,406 + -1.1 2,311,406 + -0.5 2,311,406 + +0.1 2,311,412 + -0.9 2,311,412 + -0.7 2,311,412 + -0.6 2,311,412 + -0.4 2,311,412 + +0.1 2,311,412 + +0.8 2,311,449 + +0.7 2,311,449 + -0.6 2,311,449 + +0.9 2,311,449 + -0.3 2,311,449 + +0.2 2,311,449 + -0.1 2,311,472 + +0.5 2,311,472 + -0.3 2,311,485 + -0.4 2,311,485 + +0.7 2,311,485 + +0.7 2,311,485 + +0.1 2,311,491 + +1.4 2,311,491 + -0.6 2,311,553 + -0.7 2,311,553 + +0.1 2,311,555 + -0.9 2,311,561 + -1.3 2,311,561 + -0.6 2,311,845 + -0.7 2,311,848 + -1.0 2,311,915 + +0.4 2,311,976 + -1.7 2,311,976 + +0.3 2,311,992 + -1.1 2,311,992 + -2.2 2,311,993 - +1.9 2,312,092 + -1.4 2,312,140 + PfGW456L13_2107 0.12 -0.1 2,312,140 + PfGW456L13_2107 0.12 -0.7 2,312,141 - PfGW456L13_2107 0.12 -0.4 2,312,379 + PfGW456L13_2107 0.32 -2.4 2,312,428 + PfGW456L13_2107 0.36 -2.3 2,312,428 + PfGW456L13_2107 0.36 -2.8 2,312,429 - PfGW456L13_2107 0.36 -1.9 2,312,448 + PfGW456L13_2107 0.38 -1.9 2,312,449 - PfGW456L13_2107 0.38 -0.1 2,312,494 + PfGW456L13_2107 0.41 -1.1 2,312,494 + PfGW456L13_2107 0.41 -1.1 2,312,648 + PfGW456L13_2107 0.54 -0.7 2,312,648 + PfGW456L13_2107 0.54 +0.7 2,312,676 - PfGW456L13_2107 0.56 -1.1 2,312,719 + PfGW456L13_2107 0.60 +0.3 2,312,719 + PfGW456L13_2107 0.60 +0.3 2,312,939 - PfGW456L13_2107 0.78 -1.7 2,313,264 + +0.1 2,313,265 - +0.1 2,313,408 + PfGW456L13_2108 0.25 -0.8 2,313,408 + PfGW456L13_2108 0.25 +0.7 2,313,535 - PfGW456L13_2108 0.41 +0.3 2,313,604 + PfGW456L13_2108 0.49 -0.7 2,313,814 + PfGW456L13_2108 0.75 -0.9 2,313,814 + PfGW456L13_2108 0.75 -2.2 2,313,815 - PfGW456L13_2108 0.75 +0.0 2,313,915 + PfGW456L13_2108 0.88 +0.8 2,313,915 + PfGW456L13_2108 0.88 -0.5 2,313,915 + PfGW456L13_2108 0.88 -1.3 2,313,915 + PfGW456L13_2108 0.88 -1.4 2,313,915 + PfGW456L13_2108 0.88 +0.1 2,313,915 + PfGW456L13_2108 0.88 -0.5 2,313,916 - PfGW456L13_2108 0.88 +0.1 2,313,916 - PfGW456L13_2108 0.88 -0.0 2,313,916 - PfGW456L13_2108 0.88 +0.4 2,313,916 - PfGW456L13_2108 0.88 -0.7 2,313,916 - PfGW456L13_2108 0.88 -0.4 2,313,916 - PfGW456L13_2108 0.88 +1.6 2,313,916 - PfGW456L13_2108 0.88 +1.8 2,313,939 + +0.6 2,313,939 + -1.4 2,314,017 + +0.4 2,314,017 + +0.3 2,314,017 + +0.5 2,314,028 + -0.9 2,314,114 + -1.7 2,314,130 + +0.9
Or see this region's nucleotide sequence