Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1636

Experiment: Cephalothin 3 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Cephalothin 3 mg/ml
1,797,202	+		PfGW456L13_1635	0.18	+0.1
1,797,202	+		PfGW456L13_1635	0.18	-2.8
1,797,202	+		PfGW456L13_1635	0.18	+0.2
1,797,203	-		PfGW456L13_1635	0.18	-1.4
1,797,203	-		PfGW456L13_1635	0.18	-3.3
1,797,203	-		PfGW456L13_1635	0.18	-0.3
1,797,284	-		PfGW456L13_1635	0.24	+0.2
1,797,284	-		PfGW456L13_1635	0.24	-0.5
1,797,311	-		PfGW456L13_1635	0.27	-0.3
1,797,319	+		PfGW456L13_1635	0.27	-0.8
1,797,319	+		PfGW456L13_1635	0.27	+1.5
1,797,364	+		PfGW456L13_1635	0.31	-0.0
1,797,365	-		PfGW456L13_1635	0.31	-0.3
1,797,365	-		PfGW456L13_1635	0.31	-0.1
1,797,365	-		PfGW456L13_1635	0.31	-0.5
1,797,365	-		PfGW456L13_1635	0.31	+0.6
1,797,365	-		PfGW456L13_1635	0.31	-2.1
1,797,425	-		PfGW456L13_1635	0.36	-1.0
1,797,425	-		PfGW456L13_1635	0.36	+0.1
1,797,425	-		PfGW456L13_1635	0.36	-0.1
1,797,508	+		PfGW456L13_1635	0.43	-0.7
1,797,509	-		PfGW456L13_1635	0.43	-2.3
1,797,587	+		PfGW456L13_1635	0.49	-1.0
1,797,703	+		PfGW456L13_1635	0.59	-0.0
1,797,703	+		PfGW456L13_1635	0.59	-0.5
1,797,706	+		PfGW456L13_1635	0.59	-0.6
1,797,706	+		PfGW456L13_1635	0.59	-0.9
1,797,706	+		PfGW456L13_1635	0.59	+0.5
1,797,706	+		PfGW456L13_1635	0.59	-1.0
1,797,706	+		PfGW456L13_1635	0.59	-0.1
1,797,707	-		PfGW456L13_1635	0.59	+0.1
1,797,707	-		PfGW456L13_1635	0.59	+0.3
1,797,720	+		PfGW456L13_1635	0.60	-2.8
1,797,791	-		PfGW456L13_1635	0.66	+0.0
1,797,862	+		PfGW456L13_1635	0.72	-0.3
1,797,863	-		PfGW456L13_1635	0.72	-2.5
1,797,877	+		PfGW456L13_1635	0.73	-1.4
1,797,995	-		PfGW456L13_1635	0.83	-1.2
1,798,110	+				+0.2
1,798,111	-				+1.2
1,798,111	-				-0.0
1,798,121	-				-0.3
1,798,121	-				-0.9
1,798,129	+				-2.4
1,798,130	-				-2.1
1,798,151	-				-2.8
1,798,210	+				-0.9
1,798,219	+				+0.5
1,798,219	+				-1.0
1,798,334	+		PfGW456L13_1636	0.17	-1.0
1,798,334	+		PfGW456L13_1636	0.17	+0.4
1,798,347	+		PfGW456L13_1636	0.19	-2.1
1,798,348	-		PfGW456L13_1636	0.19	+0.2
1,798,348	-		PfGW456L13_1636	0.19	-0.9
1,798,348	-		PfGW456L13_1636	0.19	-1.9
1,798,383	+		PfGW456L13_1636	0.23	-0.7
1,798,570	-		PfGW456L13_1636	0.47	+0.8
1,798,570	-		PfGW456L13_1636	0.47	+0.3
1,798,590	+		PfGW456L13_1636	0.50	-1.4
1,798,590	+		PfGW456L13_1636	0.50	-1.2
1,798,591	-		PfGW456L13_1636	0.50	-1.7
1,798,652	+		PfGW456L13_1636	0.58	-0.2
1,798,731	+		PfGW456L13_1636	0.68	+0.9
1,798,731	+		PfGW456L13_1636	0.68	-3.4
1,798,731	+		PfGW456L13_1636	0.68	-0.3
1,798,731	+		PfGW456L13_1636	0.68	-0.7
1,798,732	-		PfGW456L13_1636	0.68	+0.6
1,798,732	-		PfGW456L13_1636	0.68	-2.0
1,798,860	+		PfGW456L13_1636	0.84	+0.8
1,798,901	+		PfGW456L13_1636	0.90	-1.1
1,798,902	-		PfGW456L13_1636	0.90	-1.5
1,798,902	-		PfGW456L13_1636	0.90	-1.0
1,798,902	-		PfGW456L13_1636	0.90	-1.3
1,798,905	+				-0.1
1,798,905	+				-2.0
1,798,905	+				-1.1
1,798,905	+				-1.3
1,798,905	+				-1.2
1,798,905	+				-0.6
1,798,905	+				-3.5
1,798,905	+				+0.5
1,798,905	+				-0.2
1,798,905	+				-3.0
1,798,905	+				-1.9
1,798,905	+				-0.8
1,798,905	+				-0.8
1,798,906	-				+1.0
1,798,906	-				-0.0
1,798,906	-				-1.0
1,798,906	-				-0.4
1,798,906	-				-1.0
1,798,906	-				+0.2
1,798,906	-				-1.5
1,798,906	-				-0.3
1,798,908	-				-1.5
1,798,909	+				-2.1
1,798,909	+				-0.9
1,798,909	+				-0.7
1,798,909	+				-1.8
1,798,909	+				-0.9
1,798,909	+				-1.1
1,798,909	+				-0.3
1,798,909	+				-0.1
1,798,909	+				+0.3
1,798,909	+				+0.7
1,798,909	+				-0.2
1,798,910	-				+1.0
1,798,910	-				-0.5
1,798,910	-				-0.8
1,798,910	-				+0.3
1,798,910	-				-1.0
1,798,910	-				+0.2
1,798,910	-				-1.8
1,798,917	+				-1.0
1,798,962	+				-0.3
1,798,983	+				-0.5
1,798,984	-				-0.3
1,798,996	+				+0.4
1,798,996	+				-0.3
1,798,996	+				+1.5
1,798,996	+				+0.1
1,798,997	-				-2.1
1,799,039	+				-0.6
1,799,039	+				-0.2
1,799,039	+				+0.7
1,799,039	+				+0.4
1,799,039	+				+0.8
1,799,106	+				+0.4
1,799,113	+				+0.6
1,799,113	+				+0.2
1,799,181	+				+0.9
1,799,238	+		PfGW456L13_1637	0.17	+0.2
1,799,239	-		PfGW456L13_1637	0.17	-0.0
1,799,264	+		PfGW456L13_1637	0.21	-0.5
1,799,264	+		PfGW456L13_1637	0.21	-0.4
1,799,265	-		PfGW456L13_1637	0.21	-3.0
1,799,300	+		PfGW456L13_1637	0.27	-1.3
1,799,352	+		PfGW456L13_1637	0.35	-0.7
1,799,353	-		PfGW456L13_1637	0.36	+0.1
1,799,644	+		PfGW456L13_1637	0.83	+0.9
1,799,644	+		PfGW456L13_1637	0.83	-0.4
1,799,679	+		PfGW456L13_1637	0.88	-1.2
1,799,679	+		PfGW456L13_1637	0.88	+0.4
1,799,679	+		PfGW456L13_1637	0.88	+1.0
1,799,679	+		PfGW456L13_1637	0.88	+0.0
1,799,680	-		PfGW456L13_1637	0.89	-1.0
1,799,680	-		PfGW456L13_1637	0.89	+1.8
1,799,680	-		PfGW456L13_1637	0.89	+0.7
1,799,681	+		PfGW456L13_1637	0.89	+1.2
1,799,682	-		PfGW456L13_1637	0.89	+1.0
1,799,682	-				+0.0
1,799,682	-		PfGW456L13_1637	0.89	-1.3
1,799,755	+				+2.0
1,799,755	+				+0.6
1,799,785	+				-2.8
1,799,785	+				-0.3
1,799,786	-				+0.2
1,799,786	-				+0.5
1,799,786	-				+0.9
1,799,786	-				+0.4
1,799,804	-				+0.4
1,799,857	+		PfGW456L13_1638	0.22	-0.5
1,799,915	+		PfGW456L13_1638	0.36	-0.2
1,799,916	-		PfGW456L13_1638	0.36	+0.5