Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_1393

Experiment: Cephalothin 3 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_1392 and PfGW456L13_1393 overlap by 7 nucleotidesPfGW456L13_1393 and PfGW456L13_1394 are separated by 41 nucleotidesPfGW456L13_1394 and PfGW456L13_1395 are separated by 109 nucleotides PfGW456L13_1392 - FIG00954854: hypothetical protein, at 1,538,782 to 1,539,825 _1392 PfGW456L13_1393 - Cobalt-zinc-cadmium resistance protein, at 1,539,819 to 1,540,715 _1393 PfGW456L13_1394 - Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase), at 1,540,757 to 1,541,176 _1394 PfGW456L13_1395 - ATP-dependent helicase HrpB, at 1,541,286 to 1,543,802 _1395 Position (kb) 1539 1540 1541Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.187 kb on + strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.188 kb on - strand, within PfGW456L13_1392at 1539.235 kb on + strand, within PfGW456L13_1392at 1539.236 kb on - strand, within PfGW456L13_1392at 1539.253 kb on + strand, within PfGW456L13_1392at 1539.253 kb on + strand, within PfGW456L13_1392at 1539.317 kb on - strand, within PfGW456L13_1392at 1539.317 kb on - strand, within PfGW456L13_1392at 1539.358 kb on + strand, within PfGW456L13_1392at 1539.385 kb on + strand, within PfGW456L13_1392at 1539.385 kb on + strand, within PfGW456L13_1392at 1539.385 kb on + strand, within PfGW456L13_1392at 1539.385 kb on + strand, within PfGW456L13_1392at 1539.385 kb on + strand, within PfGW456L13_1392at 1539.385 kb on + strand, within PfGW456L13_1392at 1539.386 kb on - strand, within PfGW456L13_1392at 1539.391 kb on + strand, within PfGW456L13_1392at 1539.391 kb on + strand, within PfGW456L13_1392at 1539.391 kb on + strand, within PfGW456L13_1392at 1539.391 kb on + strand, within PfGW456L13_1392at 1539.392 kb on - strand, within PfGW456L13_1392at 1539.392 kb on - strand, within PfGW456L13_1392at 1539.392 kb on - strand, within PfGW456L13_1392at 1539.392 kb on - strand, within PfGW456L13_1392at 1539.392 kb on - strand, within PfGW456L13_1392at 1539.431 kb on - strand, within PfGW456L13_1392at 1539.431 kb on - strand, within PfGW456L13_1392at 1539.469 kb on + strand, within PfGW456L13_1392at 1539.469 kb on + strand, within PfGW456L13_1392at 1539.495 kb on - strand, within PfGW456L13_1392at 1539.495 kb on - strand, within PfGW456L13_1392at 1539.495 kb on - strand, within PfGW456L13_1392at 1539.535 kb on + strand, within PfGW456L13_1392at 1539.535 kb on + strand, within PfGW456L13_1392at 1539.535 kb on + strand, within PfGW456L13_1392at 1539.535 kb on + strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.536 kb on - strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.538 kb on + strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.539 kb on - strand, within PfGW456L13_1392at 1539.545 kb on - strand, within PfGW456L13_1392at 1539.565 kb on + strand, within PfGW456L13_1392at 1539.638 kb on - strand, within PfGW456L13_1392at 1539.691 kb on + strand, within PfGW456L13_1392at 1539.692 kb on - strand, within PfGW456L13_1392at 1539.692 kb on - strand, within PfGW456L13_1392at 1539.692 kb on - strand, within PfGW456L13_1392at 1539.692 kb on - strand, within PfGW456L13_1392at 1539.697 kb on + strand, within PfGW456L13_1392at 1539.697 kb on + strand, within PfGW456L13_1392at 1539.739 kb on + strandat 1539.739 kb on + strandat 1539.739 kb on + strandat 1539.740 kb on - strandat 1539.740 kb on - strandat 1539.740 kb on - strandat 1539.740 kb on - strandat 1539.786 kb on + strandat 1539.786 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.820 kb on + strandat 1539.821 kb on - strandat 1539.821 kb on - strandat 1539.821 kb on - strandat 1539.821 kb on - strandat 1540.026 kb on + strand, within PfGW456L13_1393at 1540.026 kb on + strand, within PfGW456L13_1393at 1540.026 kb on + strand, within PfGW456L13_1393at 1540.144 kb on + strand, within PfGW456L13_1393at 1540.144 kb on + strand, within PfGW456L13_1393at 1540.144 kb on + strand, within PfGW456L13_1393at 1540.145 kb on - strand, within PfGW456L13_1393at 1540.145 kb on - strand, within PfGW456L13_1393at 1540.145 kb on - strand, within PfGW456L13_1393at 1540.405 kb on + strand, within PfGW456L13_1393at 1540.406 kb on - strand, within PfGW456L13_1393at 1540.525 kb on + strand, within PfGW456L13_1393at 1540.526 kb on - strand, within PfGW456L13_1393at 1540.526 kb on - strand, within PfGW456L13_1393at 1540.715 kb on + strandat 1540.716 kb on - strandat 1540.759 kb on - strandat 1540.867 kb on + strand, within PfGW456L13_1394at 1540.867 kb on + strand, within PfGW456L13_1394at 1540.867 kb on + strand, within PfGW456L13_1394at 1540.867 kb on + strand, within PfGW456L13_1394at 1540.868 kb on - strand, within PfGW456L13_1394at 1540.868 kb on - strand, within PfGW456L13_1394at 1540.868 kb on - strand, within PfGW456L13_1394at 1540.868 kb on - strand, within PfGW456L13_1394at 1540.868 kb on - strand, within PfGW456L13_1394at 1540.960 kb on - strand, within PfGW456L13_1394at 1540.962 kb on + strand, within PfGW456L13_1394at 1540.962 kb on + strand, within PfGW456L13_1394at 1540.963 kb on - strand, within PfGW456L13_1394at 1541.016 kb on + strand, within PfGW456L13_1394at 1541.016 kb on + strand, within PfGW456L13_1394at 1541.016 kb on + strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.017 kb on - strand, within PfGW456L13_1394at 1541.094 kb on + strand, within PfGW456L13_1394at 1541.094 kb on + strand, within PfGW456L13_1394at 1541.176 kb on + strandat 1541.176 kb on + strandat 1541.176 kb on + strandat 1541.176 kb on + strandat 1541.177 kb on - strandat 1541.177 kb on - strandat 1541.192 kb on + strandat 1541.224 kb on + strandat 1541.224 kb on + strandat 1541.224 kb on + strandat 1541.224 kb on + strandat 1541.224 kb on + strandat 1541.224 kb on + strandat 1541.225 kb on - strandat 1541.225 kb on - strandat 1541.225 kb on - strandat 1541.225 kb on - strandat 1541.225 kb on - strandat 1541.259 kb on + strandat 1541.259 kb on + strandat 1541.260 kb on - strandat 1541.260 kb on - strandat 1541.260 kb on - strandat 1541.260 kb on - strandat 1541.260 kb on - strandat 1541.260 kb on - strandat 1541.260 kb on - strandat 1541.340 kb on - strandat 1541.382 kb on - strandat 1541.595 kb on - strand, within PfGW456L13_1395at 1541.595 kb on - strand, within PfGW456L13_1395

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 3 mg/ml
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1,539,187 + PfGW456L13_1392 0.39 -0.2
1,539,187 + PfGW456L13_1392 0.39 +0.5
1,539,187 + PfGW456L13_1392 0.39 -1.3
1,539,187 + PfGW456L13_1392 0.39 -0.1
1,539,187 + PfGW456L13_1392 0.39 +0.8
1,539,187 + PfGW456L13_1392 0.39 -0.1
1,539,187 + PfGW456L13_1392 0.39 -0.4
1,539,187 + PfGW456L13_1392 0.39 -0.6
1,539,188 - PfGW456L13_1392 0.39 -0.8
1,539,188 - PfGW456L13_1392 0.39 +0.5
1,539,188 - PfGW456L13_1392 0.39 -0.6
1,539,188 - PfGW456L13_1392 0.39 +0.4
1,539,188 - PfGW456L13_1392 0.39 -0.5
1,539,188 - PfGW456L13_1392 0.39 -0.9
1,539,188 - PfGW456L13_1392 0.39 +0.0
1,539,188 - PfGW456L13_1392 0.39 -0.3
1,539,188 - PfGW456L13_1392 0.39 -0.0
1,539,235 + PfGW456L13_1392 0.43 +0.4
1,539,236 - PfGW456L13_1392 0.43 -0.7
1,539,253 + PfGW456L13_1392 0.45 +0.5
1,539,253 + PfGW456L13_1392 0.45 -0.9
1,539,317 - PfGW456L13_1392 0.51 +0.6
1,539,317 - PfGW456L13_1392 0.51 +0.3
1,539,358 + PfGW456L13_1392 0.55 -0.3
1,539,385 + PfGW456L13_1392 0.58 -0.1
1,539,385 + PfGW456L13_1392 0.58 +0.0
1,539,385 + PfGW456L13_1392 0.58 -0.0
1,539,385 + PfGW456L13_1392 0.58 -1.1
1,539,385 + PfGW456L13_1392 0.58 +0.4
1,539,385 + PfGW456L13_1392 0.58 -1.0
1,539,386 - PfGW456L13_1392 0.58 +0.4
1,539,391 + PfGW456L13_1392 0.58 -0.6
1,539,391 + PfGW456L13_1392 0.58 +3.3
1,539,391 + PfGW456L13_1392 0.58 +0.7
1,539,391 + PfGW456L13_1392 0.58 +0.7
1,539,392 - PfGW456L13_1392 0.58 -0.5
1,539,392 - PfGW456L13_1392 0.58 +0.1
1,539,392 - PfGW456L13_1392 0.58 -0.5
1,539,392 - PfGW456L13_1392 0.58 -1.0
1,539,392 - PfGW456L13_1392 0.58 +0.6
1,539,431 - PfGW456L13_1392 0.62 +0.5
1,539,431 - PfGW456L13_1392 0.62 +0.0
1,539,469 + PfGW456L13_1392 0.66 +1.1
1,539,469 + PfGW456L13_1392 0.66 +1.8
1,539,495 - PfGW456L13_1392 0.68 -0.5
1,539,495 - PfGW456L13_1392 0.68 -0.0
1,539,495 - PfGW456L13_1392 0.68 -0.3
1,539,535 + PfGW456L13_1392 0.72 +0.2
1,539,535 + PfGW456L13_1392 0.72 -0.2
1,539,535 + PfGW456L13_1392 0.72 -0.5
1,539,535 + PfGW456L13_1392 0.72 +0.1
1,539,536 - PfGW456L13_1392 0.72 +0.6
1,539,536 - PfGW456L13_1392 0.72 +0.4
1,539,536 - PfGW456L13_1392 0.72 -0.6
1,539,536 - PfGW456L13_1392 0.72 -0.0
1,539,536 - PfGW456L13_1392 0.72 -1.2
1,539,536 - PfGW456L13_1392 0.72 -0.1
1,539,536 - PfGW456L13_1392 0.72 +0.7
1,539,538 + PfGW456L13_1392 0.72 +0.3
1,539,538 + PfGW456L13_1392 0.72 +0.5
1,539,538 + PfGW456L13_1392 0.72 -0.8
1,539,538 + PfGW456L13_1392 0.72 -0.4
1,539,538 + PfGW456L13_1392 0.72 +0.3
1,539,538 + PfGW456L13_1392 0.72 +0.3
1,539,538 + PfGW456L13_1392 0.72 -0.4
1,539,538 + PfGW456L13_1392 0.72 +0.5
1,539,538 + PfGW456L13_1392 0.72 -0.6
1,539,538 + PfGW456L13_1392 0.72 -1.2
1,539,538 + PfGW456L13_1392 0.72 +1.4
1,539,539 - PfGW456L13_1392 0.73 -1.1
1,539,539 - PfGW456L13_1392 0.73 -2.3
1,539,539 - PfGW456L13_1392 0.73 -0.2
1,539,539 - PfGW456L13_1392 0.73 -1.6
1,539,539 - PfGW456L13_1392 0.73 -0.8
1,539,539 - PfGW456L13_1392 0.73 +0.6
1,539,539 - PfGW456L13_1392 0.73 +0.5
1,539,539 - PfGW456L13_1392 0.73 -0.8
1,539,545 - PfGW456L13_1392 0.73 +0.8
1,539,565 + PfGW456L13_1392 0.75 -0.5
1,539,638 - PfGW456L13_1392 0.82 -0.5
1,539,691 + PfGW456L13_1392 0.87 +0.4
1,539,692 - PfGW456L13_1392 0.87 -0.1
1,539,692 - PfGW456L13_1392 0.87 +1.6
1,539,692 - PfGW456L13_1392 0.87 -0.3
1,539,692 - PfGW456L13_1392 0.87 -0.7
1,539,697 + PfGW456L13_1392 0.88 +0.8
1,539,697 + PfGW456L13_1392 0.88 +0.7
1,539,739 + +0.5
1,539,739 + -1.3
1,539,739 + -0.6
1,539,740 - -2.2
1,539,740 - +0.1
1,539,740 - +1.8
1,539,740 - +0.1
1,539,786 + -0.1
1,539,786 + +0.8
1,539,820 + -0.2
1,539,820 + -1.3
1,539,820 + -0.2
1,539,820 + +0.2
1,539,820 + -1.6
1,539,820 + +0.3
1,539,820 + -0.6
1,539,820 + +0.1
1,539,821 - -0.4
1,539,821 - -0.6
1,539,821 - -0.8
1,539,821 - -1.1
1,540,026 + PfGW456L13_1393 0.23 +0.0
1,540,026 + PfGW456L13_1393 0.23 +0.3
1,540,026 + PfGW456L13_1393 0.23 +0.4
1,540,144 + PfGW456L13_1393 0.36 -0.0
1,540,144 + PfGW456L13_1393 0.36 -0.8
1,540,144 + PfGW456L13_1393 0.36 -0.1
1,540,145 - PfGW456L13_1393 0.36 +0.4
1,540,145 - PfGW456L13_1393 0.36 -0.5
1,540,145 - PfGW456L13_1393 0.36 +1.0
1,540,405 + PfGW456L13_1393 0.65 -0.6
1,540,406 - PfGW456L13_1393 0.65 +0.6
1,540,525 + PfGW456L13_1393 0.79 +0.2
1,540,526 - PfGW456L13_1393 0.79 -1.6
1,540,526 - PfGW456L13_1393 0.79 -0.8
1,540,715 + -0.6
1,540,716 - +0.5
1,540,759 - +0.6
1,540,867 + PfGW456L13_1394 0.26 -0.7
1,540,867 + PfGW456L13_1394 0.26 +0.2
1,540,867 + PfGW456L13_1394 0.26 -1.0
1,540,867 + PfGW456L13_1394 0.26 -1.9
1,540,868 - PfGW456L13_1394 0.26 -1.3
1,540,868 - PfGW456L13_1394 0.26 +0.2
1,540,868 - PfGW456L13_1394 0.26 +0.8
1,540,868 - PfGW456L13_1394 0.26 +0.5
1,540,868 - PfGW456L13_1394 0.26 +1.0
1,540,960 - PfGW456L13_1394 0.48 +0.2
1,540,962 + PfGW456L13_1394 0.49 +1.0
1,540,962 + PfGW456L13_1394 0.49 -2.4
1,540,963 - PfGW456L13_1394 0.49 +1.7
1,541,016 + PfGW456L13_1394 0.62 +0.8
1,541,016 + PfGW456L13_1394 0.62 -0.5
1,541,016 + PfGW456L13_1394 0.62 -1.1
1,541,017 - PfGW456L13_1394 0.62 -0.3
1,541,017 - PfGW456L13_1394 0.62 +0.5
1,541,017 - PfGW456L13_1394 0.62 -0.1
1,541,017 - PfGW456L13_1394 0.62 -1.6
1,541,017 - PfGW456L13_1394 0.62 -0.3
1,541,017 - PfGW456L13_1394 0.62 +0.3
1,541,017 - PfGW456L13_1394 0.62 -0.2
1,541,094 + PfGW456L13_1394 0.80 -1.0
1,541,094 + PfGW456L13_1394 0.80 +0.3
1,541,176 + +0.1
1,541,176 + -0.5
1,541,176 + +0.4
1,541,176 + -0.4
1,541,177 - +0.8
1,541,177 - -0.9
1,541,192 + -0.2
1,541,224 + -0.0
1,541,224 + +0.3
1,541,224 + -0.7
1,541,224 + +0.9
1,541,224 + -0.0
1,541,224 + -0.4
1,541,225 - +0.8
1,541,225 - -0.1
1,541,225 - +0.2
1,541,225 - +0.6
1,541,225 - -0.0
1,541,259 + -0.4
1,541,259 + +0.0
1,541,260 - +0.4
1,541,260 - -0.3
1,541,260 - -0.7
1,541,260 - +0.1
1,541,260 - +0.3
1,541,260 - +0.4
1,541,260 - -1.3
1,541,340 - +0.6
1,541,382 - -0.3
1,541,595 - PfGW456L13_1395 0.12 +0.1
1,541,595 - PfGW456L13_1395 0.12 -0.4

Or see this region's nucleotide sequence