Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4407 and Echvi_4408 are separated by 52 nucleotides Echvi_4408 and Echvi_4409 are separated by 26 nucleotides
Echvi_4407: Echvi_4407 - 3'(2'),5'-bisphosphate nucleotidase, bacterial, at 5,270,476 to 5,271,237
_4407
Echvi_4408: Echvi_4408 - Mannose-1-phosphate guanylyltransferase, at 5,271,290 to 5,272,288
_4408
Echvi_4409: Echvi_4409 - Nucleoside-diphosphate-sugar epimerases, at 5,272,315 to 5,273,403
_4409
Position (kb) 5271
5272
5273 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5270.336 kb on - strand at 5270.338 kb on + strand at 5270.341 kb on + strand at 5270.342 kb on - strand at 5270.342 kb on - strand at 5270.403 kb on + strand at 5270.403 kb on + strand at 5270.410 kb on + strand at 5270.477 kb on + strand at 5270.512 kb on + strand at 5270.529 kb on - strand at 5270.667 kb on + strand, within Echvi_4407 at 5270.688 kb on + strand, within Echvi_4407 at 5270.774 kb on - strand, within Echvi_4407 at 5270.774 kb on - strand, within Echvi_4407 at 5270.788 kb on + strand, within Echvi_4407 at 5270.788 kb on + strand, within Echvi_4407 at 5270.821 kb on + strand, within Echvi_4407 at 5270.822 kb on - strand, within Echvi_4407 at 5270.858 kb on + strand, within Echvi_4407 at 5270.858 kb on + strand, within Echvi_4407 at 5270.859 kb on - strand, within Echvi_4407 at 5270.883 kb on - strand, within Echvi_4407 at 5271.073 kb on + strand, within Echvi_4407 at 5271.149 kb on - strand, within Echvi_4407 at 5271.164 kb on + strand at 5271.195 kb on + strand at 5271.195 kb on + strand at 5271.195 kb on + strand at 5271.196 kb on - strand at 5271.196 kb on - strand at 5271.219 kb on + strand at 5271.219 kb on + strand at 5271.219 kb on + strand at 5271.220 kb on - strand at 5271.220 kb on - strand at 5271.220 kb on - strand at 5271.229 kb on + strand at 5271.276 kb on - strand at 5271.288 kb on + strand at 5272.299 kb on - strand at 5272.305 kb on - strand at 5272.347 kb on + strand at 5272.353 kb on + strand at 5272.362 kb on - strand at 5272.362 kb on - strand at 5272.412 kb on + strand at 5272.643 kb on + strand, within Echvi_4409 at 5272.643 kb on + strand, within Echvi_4409 at 5272.643 kb on + strand, within Echvi_4409 at 5272.644 kb on - strand, within Echvi_4409 at 5272.721 kb on + strand, within Echvi_4409 at 5272.721 kb on + strand, within Echvi_4409 at 5272.721 kb on + strand, within Echvi_4409 at 5272.726 kb on - strand, within Echvi_4409 at 5272.726 kb on - strand, within Echvi_4409 at 5272.726 kb on - strand, within Echvi_4409 at 5272.755 kb on + strand, within Echvi_4409 at 5272.883 kb on + strand, within Echvi_4409 at 5272.884 kb on - strand, within Echvi_4409 at 5272.910 kb on - strand, within Echvi_4409 at 5272.938 kb on - strand, within Echvi_4409 at 5272.970 kb on - strand, within Echvi_4409 at 5272.998 kb on - strand, within Echvi_4409 at 5272.998 kb on - strand, within Echvi_4409 at 5272.998 kb on - strand, within Echvi_4409 at 5273.032 kb on + strand, within Echvi_4409 at 5273.032 kb on + strand, within Echvi_4409 at 5273.077 kb on + strand, within Echvi_4409 at 5273.077 kb on + strand, within Echvi_4409 at 5273.078 kb on - strand, within Echvi_4409 at 5273.187 kb on + strand, within Echvi_4409 at 5273.187 kb on + strand, within Echvi_4409 at 5273.187 kb on + strand, within Echvi_4409 at 5273.188 kb on - strand, within Echvi_4409 at 5273.188 kb on - strand, within Echvi_4409 at 5273.188 kb on - strand, within Echvi_4409
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 5,270,336 - -0.6 5,270,338 + -0.3 5,270,341 + +0.1 5,270,342 - +0.2 5,270,342 - -0.1 5,270,403 + -1.0 5,270,403 + +0.2 5,270,410 + +1.6 5,270,477 + -1.7 5,270,512 + +0.5 5,270,529 - -1.8 5,270,667 + Echvi_4407 0.25 +0.9 5,270,688 + Echvi_4407 0.28 +1.1 5,270,774 - Echvi_4407 0.39 +0.1 5,270,774 - Echvi_4407 0.39 -0.9 5,270,788 + Echvi_4407 0.41 +0.2 5,270,788 + Echvi_4407 0.41 -0.3 5,270,821 + Echvi_4407 0.45 +0.5 5,270,822 - Echvi_4407 0.45 -1.4 5,270,858 + Echvi_4407 0.50 -0.3 5,270,858 + Echvi_4407 0.50 +0.8 5,270,859 - Echvi_4407 0.50 -1.5 5,270,883 - Echvi_4407 0.53 -1.5 5,271,073 + Echvi_4407 0.78 -1.5 5,271,149 - Echvi_4407 0.88 -0.5 5,271,164 + -1.6 5,271,195 + +0.3 5,271,195 + -0.5 5,271,195 + +3.4 5,271,196 - -1.2 5,271,196 - -0.2 5,271,219 + +0.1 5,271,219 + +0.1 5,271,219 + -0.2 5,271,220 - -2.0 5,271,220 - +0.5 5,271,220 - -0.1 5,271,229 + -0.3 5,271,276 - -2.3 5,271,288 + -2.2 5,272,299 - -0.8 5,272,305 - -0.5 5,272,347 + -2.2 5,272,353 + +0.5 5,272,362 - +0.5 5,272,362 - +0.1 5,272,412 + -1.4 5,272,643 + Echvi_4409 0.30 +0.4 5,272,643 + Echvi_4409 0.30 +0.0 5,272,643 + Echvi_4409 0.30 -0.7 5,272,644 - Echvi_4409 0.30 -0.2 5,272,721 + Echvi_4409 0.37 +0.0 5,272,721 + Echvi_4409 0.37 -1.1 5,272,721 + Echvi_4409 0.37 +0.3 5,272,726 - Echvi_4409 0.38 -0.9 5,272,726 - Echvi_4409 0.38 -0.9 5,272,726 - Echvi_4409 0.38 -0.6 5,272,755 + Echvi_4409 0.40 -0.5 5,272,883 + Echvi_4409 0.52 -1.4 5,272,884 - Echvi_4409 0.52 -0.2 5,272,910 - Echvi_4409 0.55 +0.4 5,272,938 - Echvi_4409 0.57 -1.7 5,272,970 - Echvi_4409 0.60 -2.1 5,272,998 - Echvi_4409 0.63 -0.7 5,272,998 - Echvi_4409 0.63 -0.2 5,272,998 - Echvi_4409 0.63 -0.2 5,273,032 + Echvi_4409 0.66 +1.8 5,273,032 + Echvi_4409 0.66 -0.5 5,273,077 + Echvi_4409 0.70 +0.1 5,273,077 + Echvi_4409 0.70 -1.9 5,273,078 - Echvi_4409 0.70 -0.0 5,273,187 + Echvi_4409 0.80 -0.4 5,273,187 + Echvi_4409 0.80 +0.0 5,273,187 + Echvi_4409 0.80 +0.2 5,273,188 - Echvi_4409 0.80 +0.4 5,273,188 - Echvi_4409 0.80 +1.8 5,273,188 - Echvi_4409 0.80 +0.3
Or see this region's nucleotide sequence