Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_2917 and Echvi_2918 are separated by 610 nucleotides Echvi_2918 and Echvi_2919 are separated by 180 nucleotides
Echvi_2917: Echvi_2917 - hypothetical protein, at 3,492,223 to 3,492,654
_2917
Echvi_2918: Echvi_2918 - Peroxiredoxin, at 3,493,265 to 3,493,903
_2918
Echvi_2919: Echvi_2919 - Ornithine/acetylornithine aminotransferase, at 3,494,084 to 3,495,265
_2919
Position (kb)
3493
3494 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3492.374 kb on + strand, within Echvi_2917 at 3492.423 kb on + strand, within Echvi_2917 at 3492.424 kb on - strand, within Echvi_2917 at 3492.458 kb on - strand, within Echvi_2917 at 3492.458 kb on - strand, within Echvi_2917 at 3492.458 kb on - strand, within Echvi_2917 at 3492.461 kb on + strand, within Echvi_2917 at 3492.462 kb on - strand, within Echvi_2917 at 3492.462 kb on - strand, within Echvi_2917 at 3492.522 kb on - strand, within Echvi_2917 at 3492.617 kb on - strand at 3492.638 kb on - strand at 3492.663 kb on + strand at 3492.706 kb on + strand at 3492.719 kb on - strand at 3492.788 kb on - strand at 3492.795 kb on + strand at 3492.796 kb on - strand at 3492.814 kb on + strand at 3492.815 kb on - strand at 3492.871 kb on + strand at 3492.872 kb on - strand at 3492.872 kb on - strand at 3492.896 kb on - strand at 3492.917 kb on - strand at 3492.917 kb on - strand at 3492.917 kb on - strand at 3492.918 kb on + strand at 3492.919 kb on - strand at 3492.919 kb on - strand at 3492.919 kb on - strand at 3492.946 kb on + strand at 3492.946 kb on + strand at 3492.947 kb on - strand at 3492.947 kb on - strand at 3492.948 kb on + strand at 3492.948 kb on + strand at 3492.948 kb on + strand at 3492.948 kb on + strand at 3492.949 kb on - strand at 3492.977 kb on - strand at 3492.977 kb on - strand at 3493.015 kb on - strand at 3493.037 kb on - strand at 3493.141 kb on - strand at 3493.163 kb on + strand at 3493.195 kb on - strand at 3493.228 kb on - strand at 3493.254 kb on + strand at 3493.255 kb on - strand at 3493.299 kb on + strand at 3493.416 kb on + strand, within Echvi_2918 at 3493.427 kb on + strand, within Echvi_2918 at 3493.451 kb on + strand, within Echvi_2918 at 3493.451 kb on + strand, within Echvi_2918 at 3493.455 kb on - strand, within Echvi_2918 at 3493.488 kb on + strand, within Echvi_2918 at 3493.489 kb on - strand, within Echvi_2918 at 3493.504 kb on + strand, within Echvi_2918 at 3493.505 kb on - strand, within Echvi_2918 at 3493.528 kb on + strand, within Echvi_2918 at 3493.541 kb on + strand, within Echvi_2918 at 3493.547 kb on - strand, within Echvi_2918 at 3493.576 kb on + strand, within Echvi_2918 at 3493.577 kb on - strand, within Echvi_2918 at 3493.581 kb on + strand, within Echvi_2918 at 3493.582 kb on - strand, within Echvi_2918 at 3493.753 kb on + strand, within Echvi_2918 at 3493.753 kb on + strand, within Echvi_2918 at 3493.783 kb on - strand, within Echvi_2918 at 3493.827 kb on + strand, within Echvi_2918 at 3493.833 kb on + strand, within Echvi_2918 at 3493.895 kb on + strand at 3493.896 kb on - strand at 3493.904 kb on - strand at 3493.932 kb on - strand at 3494.110 kb on + strand at 3494.224 kb on + strand, within Echvi_2919 at 3494.477 kb on - strand, within Echvi_2919 at 3494.492 kb on - strand, within Echvi_2919 at 3494.492 kb on - strand, within Echvi_2919 at 3494.510 kb on - strand, within Echvi_2919 at 3494.606 kb on + strand, within Echvi_2919 at 3494.606 kb on + strand, within Echvi_2919 at 3494.607 kb on - strand, within Echvi_2919 at 3494.705 kb on + strand, within Echvi_2919 at 3494.706 kb on - strand, within Echvi_2919 at 3494.740 kb on + strand, within Echvi_2919 at 3494.740 kb on + strand, within Echvi_2919
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 3,492,374 + Echvi_2917 0.35 +0.0 3,492,423 + Echvi_2917 0.46 -0.2 3,492,424 - Echvi_2917 0.47 +0.5 3,492,458 - Echvi_2917 0.54 -1.8 3,492,458 - Echvi_2917 0.54 +0.1 3,492,458 - Echvi_2917 0.54 +0.2 3,492,461 + Echvi_2917 0.55 +1.9 3,492,462 - Echvi_2917 0.55 -1.2 3,492,462 - Echvi_2917 0.55 -0.2 3,492,522 - Echvi_2917 0.69 -1.3 3,492,617 - +0.7 3,492,638 - -0.1 3,492,663 + -0.6 3,492,706 + +0.8 3,492,719 - +0.8 3,492,788 - -0.1 3,492,795 + -0.9 3,492,796 - +0.5 3,492,814 + -0.1 3,492,815 - +0.2 3,492,871 + -0.6 3,492,872 - -1.3 3,492,872 - -0.3 3,492,896 - +0.3 3,492,917 - +0.2 3,492,917 - +2.0 3,492,917 - -2.0 3,492,918 + -0.6 3,492,919 - -0.6 3,492,919 - -1.2 3,492,919 - +1.3 3,492,946 + +0.4 3,492,946 + -1.1 3,492,947 - +2.0 3,492,947 - -1.2 3,492,948 + -2.0 3,492,948 + +1.7 3,492,948 + -0.3 3,492,948 + +1.1 3,492,949 - +0.0 3,492,977 - +0.4 3,492,977 - -0.5 3,493,015 - +0.2 3,493,037 - -0.3 3,493,141 - +0.3 3,493,163 + +2.0 3,493,195 - -0.8 3,493,228 - -0.2 3,493,254 + +1.0 3,493,255 - -0.3 3,493,299 + -1.6 3,493,416 + Echvi_2918 0.24 -0.5 3,493,427 + Echvi_2918 0.25 -1.9 3,493,451 + Echvi_2918 0.29 -0.6 3,493,451 + Echvi_2918 0.29 -1.9 3,493,455 - Echvi_2918 0.30 +0.3 3,493,488 + Echvi_2918 0.35 -0.1 3,493,489 - Echvi_2918 0.35 -1.3 3,493,504 + Echvi_2918 0.37 -2.1 3,493,505 - Echvi_2918 0.38 -2.1 3,493,528 + Echvi_2918 0.41 -1.0 3,493,541 + Echvi_2918 0.43 -2.3 3,493,547 - Echvi_2918 0.44 -1.8 3,493,576 + Echvi_2918 0.49 +1.0 3,493,577 - Echvi_2918 0.49 -1.8 3,493,581 + Echvi_2918 0.49 -1.7 3,493,582 - Echvi_2918 0.50 -3.0 3,493,753 + Echvi_2918 0.76 +0.1 3,493,753 + Echvi_2918 0.76 +0.1 3,493,783 - Echvi_2918 0.81 +0.8 3,493,827 + Echvi_2918 0.88 -2.1 3,493,833 + Echvi_2918 0.89 -0.1 3,493,895 + -1.1 3,493,896 - -0.2 3,493,904 - -1.0 3,493,932 - +1.6 3,494,110 + +0.3 3,494,224 + Echvi_2919 0.12 -1.1 3,494,477 - Echvi_2919 0.33 +0.7 3,494,492 - Echvi_2919 0.35 -0.2 3,494,492 - Echvi_2919 0.35 +0.4 3,494,510 - Echvi_2919 0.36 -0.0 3,494,606 + Echvi_2919 0.44 -1.3 3,494,606 + Echvi_2919 0.44 +0.4 3,494,607 - Echvi_2919 0.44 -2.4 3,494,705 + Echvi_2919 0.53 -1.1 3,494,706 - Echvi_2919 0.53 +0.7 3,494,740 + Echvi_2919 0.55 -2.5 3,494,740 + Echvi_2919 0.55 -0.5
Or see this region's nucleotide sequence