Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2918

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_2917 and Echvi_2918 are separated by 610 nucleotidesEchvi_2918 and Echvi_2919 are separated by 180 nucleotides Echvi_2917: Echvi_2917 - hypothetical protein, at 3,492,223 to 3,492,654 _2917 Echvi_2918: Echvi_2918 - Peroxiredoxin, at 3,493,265 to 3,493,903 _2918 Echvi_2919: Echvi_2919 - Ornithine/acetylornithine aminotransferase, at 3,494,084 to 3,495,265 _2919 Position (kb) 3493 3494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3492.374 kb on + strand, within Echvi_2917at 3492.423 kb on + strand, within Echvi_2917at 3492.424 kb on - strand, within Echvi_2917at 3492.458 kb on - strand, within Echvi_2917at 3492.458 kb on - strand, within Echvi_2917at 3492.458 kb on - strand, within Echvi_2917at 3492.461 kb on + strand, within Echvi_2917at 3492.462 kb on - strand, within Echvi_2917at 3492.462 kb on - strand, within Echvi_2917at 3492.522 kb on - strand, within Echvi_2917at 3492.617 kb on - strandat 3492.638 kb on - strandat 3492.663 kb on + strandat 3492.706 kb on + strandat 3492.719 kb on - strandat 3492.788 kb on - strandat 3492.795 kb on + strandat 3492.796 kb on - strandat 3492.814 kb on + strandat 3492.815 kb on - strandat 3492.871 kb on + strandat 3492.872 kb on - strandat 3492.872 kb on - strandat 3492.896 kb on - strandat 3492.917 kb on - strandat 3492.917 kb on - strandat 3492.917 kb on - strandat 3492.918 kb on + strandat 3492.919 kb on - strandat 3492.919 kb on - strandat 3492.919 kb on - strandat 3492.946 kb on + strandat 3492.946 kb on + strandat 3492.947 kb on - strandat 3492.947 kb on - strandat 3492.948 kb on + strandat 3492.948 kb on + strandat 3492.948 kb on + strandat 3492.948 kb on + strandat 3492.949 kb on - strandat 3492.977 kb on - strandat 3492.977 kb on - strandat 3493.015 kb on - strandat 3493.037 kb on - strandat 3493.141 kb on - strandat 3493.163 kb on + strandat 3493.195 kb on - strandat 3493.228 kb on - strandat 3493.254 kb on + strandat 3493.255 kb on - strandat 3493.299 kb on + strandat 3493.416 kb on + strand, within Echvi_2918at 3493.427 kb on + strand, within Echvi_2918at 3493.451 kb on + strand, within Echvi_2918at 3493.451 kb on + strand, within Echvi_2918at 3493.455 kb on - strand, within Echvi_2918at 3493.488 kb on + strand, within Echvi_2918at 3493.489 kb on - strand, within Echvi_2918at 3493.504 kb on + strand, within Echvi_2918at 3493.505 kb on - strand, within Echvi_2918at 3493.528 kb on + strand, within Echvi_2918at 3493.541 kb on + strand, within Echvi_2918at 3493.547 kb on - strand, within Echvi_2918at 3493.576 kb on + strand, within Echvi_2918at 3493.577 kb on - strand, within Echvi_2918at 3493.581 kb on + strand, within Echvi_2918at 3493.582 kb on - strand, within Echvi_2918at 3493.753 kb on + strand, within Echvi_2918at 3493.753 kb on + strand, within Echvi_2918at 3493.783 kb on - strand, within Echvi_2918at 3493.827 kb on + strand, within Echvi_2918at 3493.833 kb on + strand, within Echvi_2918at 3493.895 kb on + strandat 3493.896 kb on - strandat 3493.904 kb on - strandat 3493.932 kb on - strandat 3494.110 kb on + strandat 3494.224 kb on + strand, within Echvi_2919at 3494.477 kb on - strand, within Echvi_2919at 3494.492 kb on - strand, within Echvi_2919at 3494.492 kb on - strand, within Echvi_2919at 3494.510 kb on - strand, within Echvi_2919at 3494.606 kb on + strand, within Echvi_2919at 3494.606 kb on + strand, within Echvi_2919at 3494.607 kb on - strand, within Echvi_2919at 3494.705 kb on + strand, within Echvi_2919at 3494.706 kb on - strand, within Echvi_2919at 3494.740 kb on + strand, within Echvi_2919at 3494.740 kb on + strand, within Echvi_2919

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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3,492,374 + Echvi_2917 0.35 +0.0
3,492,423 + Echvi_2917 0.46 -0.2
3,492,424 - Echvi_2917 0.47 +0.5
3,492,458 - Echvi_2917 0.54 -1.8
3,492,458 - Echvi_2917 0.54 +0.1
3,492,458 - Echvi_2917 0.54 +0.2
3,492,461 + Echvi_2917 0.55 +1.9
3,492,462 - Echvi_2917 0.55 -1.2
3,492,462 - Echvi_2917 0.55 -0.2
3,492,522 - Echvi_2917 0.69 -1.3
3,492,617 - +0.7
3,492,638 - -0.1
3,492,663 + -0.6
3,492,706 + +0.8
3,492,719 - +0.8
3,492,788 - -0.1
3,492,795 + -0.9
3,492,796 - +0.5
3,492,814 + -0.1
3,492,815 - +0.2
3,492,871 + -0.6
3,492,872 - -1.3
3,492,872 - -0.3
3,492,896 - +0.3
3,492,917 - +0.2
3,492,917 - +2.0
3,492,917 - -2.0
3,492,918 + -0.6
3,492,919 - -0.6
3,492,919 - -1.2
3,492,919 - +1.3
3,492,946 + +0.4
3,492,946 + -1.1
3,492,947 - +2.0
3,492,947 - -1.2
3,492,948 + -2.0
3,492,948 + +1.7
3,492,948 + -0.3
3,492,948 + +1.1
3,492,949 - +0.0
3,492,977 - +0.4
3,492,977 - -0.5
3,493,015 - +0.2
3,493,037 - -0.3
3,493,141 - +0.3
3,493,163 + +2.0
3,493,195 - -0.8
3,493,228 - -0.2
3,493,254 + +1.0
3,493,255 - -0.3
3,493,299 + -1.6
3,493,416 + Echvi_2918 0.24 -0.5
3,493,427 + Echvi_2918 0.25 -1.9
3,493,451 + Echvi_2918 0.29 -0.6
3,493,451 + Echvi_2918 0.29 -1.9
3,493,455 - Echvi_2918 0.30 +0.3
3,493,488 + Echvi_2918 0.35 -0.1
3,493,489 - Echvi_2918 0.35 -1.3
3,493,504 + Echvi_2918 0.37 -2.1
3,493,505 - Echvi_2918 0.38 -2.1
3,493,528 + Echvi_2918 0.41 -1.0
3,493,541 + Echvi_2918 0.43 -2.3
3,493,547 - Echvi_2918 0.44 -1.8
3,493,576 + Echvi_2918 0.49 +1.0
3,493,577 - Echvi_2918 0.49 -1.8
3,493,581 + Echvi_2918 0.49 -1.7
3,493,582 - Echvi_2918 0.50 -3.0
3,493,753 + Echvi_2918 0.76 +0.1
3,493,753 + Echvi_2918 0.76 +0.1
3,493,783 - Echvi_2918 0.81 +0.8
3,493,827 + Echvi_2918 0.88 -2.1
3,493,833 + Echvi_2918 0.89 -0.1
3,493,895 + -1.1
3,493,896 - -0.2
3,493,904 - -1.0
3,493,932 - +1.6
3,494,110 + +0.3
3,494,224 + Echvi_2919 0.12 -1.1
3,494,477 - Echvi_2919 0.33 +0.7
3,494,492 - Echvi_2919 0.35 -0.2
3,494,492 - Echvi_2919 0.35 +0.4
3,494,510 - Echvi_2919 0.36 -0.0
3,494,606 + Echvi_2919 0.44 -1.3
3,494,606 + Echvi_2919 0.44 +0.4
3,494,607 - Echvi_2919 0.44 -2.4
3,494,705 + Echvi_2919 0.53 -1.1
3,494,706 - Echvi_2919 0.53 +0.7
3,494,740 + Echvi_2919 0.55 -2.5
3,494,740 + Echvi_2919 0.55 -0.5

Or see this region's nucleotide sequence