Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0844 and Echvi_0845 are separated by 35 nucleotides Echvi_0845 and Echvi_0846 are separated by 425 nucleotides
Echvi_0844: Echvi_0844 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 964,626 to 966,128
_0844
Echvi_0845: Echvi_0845 - hypothetical protein, at 966,164 to 966,709
_0845
Echvi_0846: Echvi_0846 - hypothetical protein, at 967,135 to 970,137
_0846
Position (kb) 966
967 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 966.130 kb on - strand at 966.159 kb on + strand at 966.159 kb on + strand at 966.159 kb on + strand at 966.228 kb on + strand, within Echvi_0845 at 966.229 kb on - strand, within Echvi_0845 at 966.233 kb on - strand, within Echvi_0845 at 966.236 kb on + strand, within Echvi_0845 at 966.394 kb on + strand, within Echvi_0845 at 966.394 kb on + strand, within Echvi_0845 at 966.395 kb on - strand, within Echvi_0845 at 966.400 kb on + strand, within Echvi_0845 at 966.456 kb on - strand, within Echvi_0845 at 966.501 kb on + strand, within Echvi_0845 at 966.501 kb on + strand, within Echvi_0845 at 966.502 kb on - strand, within Echvi_0845 at 966.507 kb on - strand, within Echvi_0845 at 966.532 kb on - strand, within Echvi_0845 at 966.572 kb on + strand, within Echvi_0845 at 966.632 kb on + strand, within Echvi_0845 at 966.667 kb on - strand at 966.688 kb on - strand at 966.707 kb on + strand at 966.734 kb on + strand at 966.751 kb on + strand at 966.752 kb on - strand at 966.752 kb on - strand at 966.752 kb on - strand at 966.752 kb on - strand at 966.762 kb on + strand at 966.763 kb on - strand at 966.768 kb on - strand at 966.779 kb on + strand at 966.806 kb on + strand at 966.814 kb on + strand at 966.850 kb on + strand at 966.863 kb on - strand at 966.866 kb on + strand at 966.886 kb on + strand at 966.886 kb on + strand at 966.887 kb on - strand at 966.887 kb on - strand at 966.925 kb on + strand at 966.925 kb on + strand at 966.931 kb on + strand at 966.931 kb on + strand at 966.935 kb on + strand at 966.936 kb on - strand at 966.936 kb on - strand at 966.936 kb on - strand at 966.948 kb on - strand at 967.011 kb on + strand at 967.012 kb on - strand at 967.012 kb on - strand at 967.012 kb on - strand at 967.016 kb on - strand at 967.070 kb on + strand at 967.070 kb on + strand at 967.070 kb on + strand at 967.071 kb on - strand at 967.108 kb on - strand at 967.125 kb on - strand at 967.125 kb on - strand at 967.125 kb on - strand at 967.132 kb on - strand at 967.132 kb on - strand at 967.132 kb on - strand at 967.132 kb on - strand at 967.136 kb on + strand at 967.137 kb on - strand at 967.137 kb on - strand at 967.258 kb on - strand at 967.258 kb on - strand at 967.324 kb on - strand at 967.324 kb on - strand at 967.356 kb on + strand at 967.357 kb on - strand at 967.445 kb on + strand, within Echvi_0846 at 967.445 kb on + strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.446 kb on - strand, within Echvi_0846 at 967.513 kb on - strand, within Echvi_0846 at 967.585 kb on - strand, within Echvi_0846 at 967.612 kb on - strand, within Echvi_0846 at 967.612 kb on - strand, within Echvi_0846 at 967.614 kb on + strand, within Echvi_0846 at 967.614 kb on + strand, within Echvi_0846 at 967.704 kb on + strand, within Echvi_0846 at 967.705 kb on - strand, within Echvi_0846
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 966,130 - -1.1 966,159 + +0.3 966,159 + -0.5 966,159 + -2.8 966,228 + Echvi_0845 0.12 -0.7 966,229 - Echvi_0845 0.12 +1.3 966,233 - Echvi_0845 0.13 -0.8 966,236 + Echvi_0845 0.13 -2.2 966,394 + Echvi_0845 0.42 +0.3 966,394 + Echvi_0845 0.42 -0.8 966,395 - Echvi_0845 0.42 -0.5 966,400 + Echvi_0845 0.43 -1.5 966,456 - Echvi_0845 0.53 -0.6 966,501 + Echvi_0845 0.62 -0.8 966,501 + Echvi_0845 0.62 -1.9 966,502 - Echvi_0845 0.62 +0.4 966,507 - Echvi_0845 0.63 -0.2 966,532 - Echvi_0845 0.67 +2.5 966,572 + Echvi_0845 0.75 -0.4 966,632 + Echvi_0845 0.86 +1.5 966,667 - +1.2 966,688 - +2.2 966,707 + +0.9 966,734 + -0.2 966,751 + +0.2 966,752 - -0.0 966,752 - +0.7 966,752 - +0.3 966,752 - -0.5 966,762 + +0.5 966,763 - +1.5 966,768 - -0.0 966,779 + -1.8 966,806 + +0.9 966,814 + -0.5 966,850 + +0.2 966,863 - -0.2 966,866 + +0.5 966,886 + +0.5 966,886 + -0.3 966,887 - +0.3 966,887 - -0.9 966,925 + +0.2 966,925 + +1.8 966,931 + +0.3 966,931 + +1.9 966,935 + +0.6 966,936 - +0.2 966,936 - +0.3 966,936 - -0.4 966,948 - +0.9 967,011 + -0.2 967,012 - +1.7 967,012 - -0.1 967,012 - -0.3 967,016 - +0.3 967,070 + -2.4 967,070 + +0.8 967,070 + -0.4 967,071 - -0.5 967,108 - +0.9 967,125 - -0.2 967,125 - -1.0 967,125 - -0.3 967,132 - -0.5 967,132 - -0.1 967,132 - +0.5 967,132 - +0.1 967,136 + +0.2 967,137 - -1.4 967,137 - -2.3 967,258 - +0.9 967,258 - +0.5 967,324 - -0.8 967,324 - -2.6 967,356 + -0.3 967,357 - -1.1 967,445 + Echvi_0846 0.10 +0.2 967,445 + Echvi_0846 0.10 -1.5 967,446 - Echvi_0846 0.10 -0.6 967,446 - Echvi_0846 0.10 -0.5 967,446 - Echvi_0846 0.10 -0.3 967,446 - Echvi_0846 0.10 -2.5 967,446 - Echvi_0846 0.10 +0.9 967,513 - Echvi_0846 0.13 +0.5 967,585 - Echvi_0846 0.15 -0.8 967,612 - Echvi_0846 0.16 +0.9 967,612 - Echvi_0846 0.16 +0.8 967,614 + Echvi_0846 0.16 -0.2 967,614 + Echvi_0846 0.16 -0.5 967,704 + Echvi_0846 0.19 +0.2 967,705 - Echvi_0846 0.19 -1.1
Or see this region's nucleotide sequence