Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0704 and Echvi_0705 are separated by 122 nucleotides Echvi_0705 and Echvi_0706 are separated by 99 nucleotides Echvi_0706 and Echvi_0707 are separated by 102 nucleotides Echvi_0707 and Echvi_0708 are separated by 5 nucleotides
Echvi_0704: Echvi_0704 - hypothetical protein, at 796,670 to 797,131
_0704
Echvi_0705: Echvi_0705 - hypothetical protein, at 797,254 to 797,748
_0705
Echvi_0706: Echvi_0706 - hypothetical protein, at 797,848 to 797,946
_0706
Echvi_0707: Echvi_0707 - Uncharacterized protein conserved in bacteria, at 798,049 to 798,519
_0707
Echvi_0708: Echvi_0708 - transcription termination factor NusA, at 798,525 to 799,772
_0708
Position (kb) 798
799 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 797.091 kb on - strand at 797.094 kb on + strand at 797.107 kb on + strand at 797.110 kb on + strand at 797.110 kb on + strand at 797.111 kb on - strand at 797.111 kb on - strand at 797.120 kb on - strand at 797.188 kb on - strand at 797.196 kb on + strand at 797.196 kb on + strand at 797.205 kb on + strand at 797.206 kb on - strand at 797.217 kb on + strand at 797.228 kb on + strand at 797.228 kb on + strand at 797.230 kb on + strand at 797.237 kb on + strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.238 kb on - strand at 797.277 kb on + strand at 797.314 kb on + strand, within Echvi_0705 at 797.315 kb on - strand, within Echvi_0705 at 797.344 kb on + strand, within Echvi_0705 at 797.344 kb on + strand, within Echvi_0705 at 797.345 kb on - strand, within Echvi_0705 at 797.347 kb on - strand, within Echvi_0705 at 797.347 kb on - strand, within Echvi_0705 at 797.347 kb on - strand, within Echvi_0705 at 797.352 kb on + strand, within Echvi_0705 at 797.353 kb on - strand, within Echvi_0705 at 797.362 kb on - strand, within Echvi_0705 at 797.377 kb on - strand, within Echvi_0705 at 797.393 kb on + strand, within Echvi_0705 at 797.393 kb on + strand, within Echvi_0705 at 797.409 kb on - strand, within Echvi_0705 at 797.435 kb on + strand, within Echvi_0705 at 797.435 kb on + strand, within Echvi_0705 at 797.436 kb on - strand, within Echvi_0705 at 797.436 kb on - strand, within Echvi_0705 at 797.441 kb on - strand, within Echvi_0705 at 797.461 kb on - strand, within Echvi_0705 at 797.564 kb on + strand, within Echvi_0705 at 797.570 kb on + strand, within Echvi_0705 at 797.570 kb on + strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.571 kb on - strand, within Echvi_0705 at 797.594 kb on + strand, within Echvi_0705 at 797.594 kb on + strand, within Echvi_0705 at 797.595 kb on - strand, within Echvi_0705 at 797.608 kb on + strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.658 kb on - strand, within Echvi_0705 at 797.708 kb on - strand at 797.717 kb on + strand at 797.723 kb on + strand at 797.723 kb on + strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.724 kb on - strand at 797.747 kb on - strand at 797.823 kb on - strand at 797.946 kb on + strand at 797.950 kb on + strand at 797.993 kb on + strand at 798.035 kb on + strand at 798.035 kb on + strand at 798.039 kb on + strand at 798.039 kb on + strand at 798.204 kb on + strand, within Echvi_0707 at 798.262 kb on + strand, within Echvi_0707
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 797,091 - +0.3 797,094 + -1.4 797,107 + -0.5 797,110 + -0.6 797,110 + -0.1 797,111 - +0.3 797,111 - -0.2 797,120 - -0.2 797,188 - +0.1 797,196 + +0.7 797,196 + -0.0 797,205 + -0.2 797,206 - +1.0 797,217 + +1.5 797,228 + -0.9 797,228 + +0.0 797,230 + -0.6 797,237 + +0.6 797,238 - +1.3 797,238 - +0.0 797,238 - +0.1 797,238 - -1.5 797,238 - -1.9 797,238 - -0.5 797,277 + +1.6 797,314 + Echvi_0705 0.12 +0.3 797,315 - Echvi_0705 0.12 -0.4 797,344 + Echvi_0705 0.18 +2.1 797,344 + Echvi_0705 0.18 -0.7 797,345 - Echvi_0705 0.18 +1.0 797,347 - Echvi_0705 0.19 +0.7 797,347 - Echvi_0705 0.19 -1.9 797,347 - Echvi_0705 0.19 +0.7 797,352 + Echvi_0705 0.20 -0.8 797,353 - Echvi_0705 0.20 +0.5 797,362 - Echvi_0705 0.22 -0.4 797,377 - Echvi_0705 0.25 -0.2 797,393 + Echvi_0705 0.28 -1.8 797,393 + Echvi_0705 0.28 -0.5 797,409 - Echvi_0705 0.31 +0.6 797,435 + Echvi_0705 0.37 +0.2 797,435 + Echvi_0705 0.37 -0.4 797,436 - Echvi_0705 0.37 +0.4 797,436 - Echvi_0705 0.37 -0.2 797,441 - Echvi_0705 0.38 -1.1 797,461 - Echvi_0705 0.42 -0.4 797,564 + Echvi_0705 0.63 +0.6 797,570 + Echvi_0705 0.64 -1.0 797,570 + Echvi_0705 0.64 +0.5 797,571 - Echvi_0705 0.64 -0.9 797,571 - Echvi_0705 0.64 +0.5 797,571 - Echvi_0705 0.64 -0.5 797,594 + Echvi_0705 0.69 -0.1 797,594 + Echvi_0705 0.69 -0.6 797,595 - Echvi_0705 0.69 +0.2 797,608 + Echvi_0705 0.72 -0.8 797,658 - Echvi_0705 0.82 -0.7 797,658 - Echvi_0705 0.82 +0.7 797,658 - Echvi_0705 0.82 -0.7 797,708 - +1.2 797,717 + +0.7 797,723 + +1.9 797,723 + -0.4 797,724 - -1.8 797,724 - +1.2 797,724 - -1.4 797,724 - -0.9 797,724 - +1.2 797,747 - +3.2 797,823 - -1.0 797,946 + +0.8 797,950 + -0.5 797,993 + -0.1 798,035 + -1.0 798,035 + +0.1 798,039 + -0.9 798,039 + -0.4 798,204 + Echvi_0707 0.33 -1.0 798,262 + Echvi_0707 0.45 -0.5
Or see this region's nucleotide sequence