Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0638

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0637 and Echvi_0638 are separated by 82 nucleotidesEchvi_0638 and Echvi_0639 are separated by 335 nucleotidesEchvi_0639 and Echvi_0640 are separated by 106 nucleotides Echvi_0637: Echvi_0637 - Serine phosphatase RsbU, regulator of sigma subunit, at 720,246 to 722,312 _0637 Echvi_0638: Echvi_0638 - hypothetical protein, at 722,395 to 723,111 _0638 Echvi_0639: Echvi_0639 - hypothetical protein, at 723,447 to 723,692 _0639 Echvi_0640: Echvi_0640 - hypothetical protein, at 723,799 to 724,092 _0640 Position (kb) 722 723 724Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 721.405 kb on - strand, within Echvi_0637at 721.405 kb on - strand, within Echvi_0637at 721.452 kb on + strand, within Echvi_0637at 721.478 kb on + strand, within Echvi_0637at 721.479 kb on - strand, within Echvi_0637at 721.514 kb on + strand, within Echvi_0637at 721.514 kb on + strand, within Echvi_0637at 721.742 kb on + strand, within Echvi_0637at 721.810 kb on + strand, within Echvi_0637at 721.811 kb on - strand, within Echvi_0637at 721.813 kb on - strand, within Echvi_0637at 721.813 kb on - strand, within Echvi_0637at 721.816 kb on + strand, within Echvi_0637at 721.817 kb on - strand, within Echvi_0637at 721.823 kb on + strand, within Echvi_0637at 721.823 kb on + strand, within Echvi_0637at 721.823 kb on + strand, within Echvi_0637at 721.831 kb on - strand, within Echvi_0637at 721.846 kb on + strand, within Echvi_0637at 721.847 kb on - strand, within Echvi_0637at 721.849 kb on - strand, within Echvi_0637at 721.849 kb on - strand, within Echvi_0637at 721.849 kb on - strand, within Echvi_0637at 721.849 kb on - strand, within Echvi_0637at 721.849 kb on - strand, within Echvi_0637at 721.868 kb on + strand, within Echvi_0637at 721.886 kb on - strand, within Echvi_0637at 721.985 kb on + strand, within Echvi_0637at 721.985 kb on + strand, within Echvi_0637at 721.985 kb on + strand, within Echvi_0637at 721.985 kb on + strand, within Echvi_0637at 721.986 kb on - strand, within Echvi_0637at 721.986 kb on - strand, within Echvi_0637at 721.986 kb on - strand, within Echvi_0637at 721.986 kb on - strand, within Echvi_0637at 721.988 kb on + strand, within Echvi_0637at 721.989 kb on - strand, within Echvi_0637at 721.989 kb on - strand, within Echvi_0637at 721.997 kb on + strand, within Echvi_0637at 721.997 kb on + strand, within Echvi_0637at 722.012 kb on + strand, within Echvi_0637at 722.014 kb on + strand, within Echvi_0637at 722.094 kb on - strand, within Echvi_0637at 722.094 kb on - strand, within Echvi_0637at 722.125 kb on + strandat 722.134 kb on + strandat 722.171 kb on + strandat 722.171 kb on + strandat 722.172 kb on - strandat 722.277 kb on + strandat 722.277 kb on + strandat 722.278 kb on - strandat 722.292 kb on + strandat 722.293 kb on - strandat 722.314 kb on + strandat 722.333 kb on + strandat 722.333 kb on + strandat 722.333 kb on + strandat 722.333 kb on + strandat 722.333 kb on + strandat 722.334 kb on - strandat 722.337 kb on + strandat 722.337 kb on + strandat 722.338 kb on - strandat 722.338 kb on - strandat 722.367 kb on + strandat 722.432 kb on + strandat 722.432 kb on + strandat 722.433 kb on - strandat 722.591 kb on - strand, within Echvi_0638at 722.659 kb on - strand, within Echvi_0638at 722.742 kb on + strand, within Echvi_0638at 722.743 kb on - strand, within Echvi_0638at 722.748 kb on + strand, within Echvi_0638at 722.797 kb on - strand, within Echvi_0638at 722.829 kb on - strand, within Echvi_0638at 722.912 kb on - strand, within Echvi_0638at 722.914 kb on + strand, within Echvi_0638at 722.914 kb on + strand, within Echvi_0638at 722.915 kb on - strand, within Echvi_0638at 722.915 kb on - strand, within Echvi_0638at 722.986 kb on + strand, within Echvi_0638at 722.986 kb on + strand, within Echvi_0638at 722.987 kb on - strand, within Echvi_0638at 723.005 kb on + strand, within Echvi_0638at 723.093 kb on - strandat 723.109 kb on + strandat 723.127 kb on - strandat 723.149 kb on - strandat 723.156 kb on + strandat 723.156 kb on + strandat 723.157 kb on - strandat 723.265 kb on + strandat 723.265 kb on + strandat 723.266 kb on - strandat 723.266 kb on - strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.298 kb on + strandat 723.299 kb on - strandat 723.382 kb on + strandat 723.382 kb on + strandat 723.382 kb on + strandat 723.407 kb on - strandat 723.453 kb on + strandat 723.453 kb on + strandat 723.498 kb on - strand, within Echvi_0639at 723.498 kb on - strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.503 kb on + strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.504 kb on - strand, within Echvi_0639at 723.506 kb on + strand, within Echvi_0639at 723.506 kb on + strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.507 kb on - strand, within Echvi_0639at 723.568 kb on + strand, within Echvi_0639at 723.740 kb on + strandat 723.824 kb on + strandat 723.824 kb on + strandat 723.825 kb on - strandat 723.825 kb on - strandat 723.899 kb on - strand, within Echvi_0640at 723.926 kb on - strand, within Echvi_0640at 723.983 kb on + strand, within Echvi_0640at 723.984 kb on - strand, within Echvi_0640at 724.003 kb on + strand, within Echvi_0640at 724.010 kb on - strand, within Echvi_0640at 724.010 kb on - strand, within Echvi_0640at 724.016 kb on - strand, within Echvi_0640at 724.102 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
721,405 - Echvi_0637 0.56 -0.1
721,405 - Echvi_0637 0.56 +0.3
721,452 + Echvi_0637 0.58 +1.5
721,478 + Echvi_0637 0.60 +0.1
721,479 - Echvi_0637 0.60 +0.4
721,514 + Echvi_0637 0.61 -0.8
721,514 + Echvi_0637 0.61 +0.2
721,742 + Echvi_0637 0.72 +1.4
721,810 + Echvi_0637 0.76 -0.1
721,811 - Echvi_0637 0.76 -2.2
721,813 - Echvi_0637 0.76 +1.0
721,813 - Echvi_0637 0.76 -0.1
721,816 + Echvi_0637 0.76 +0.2
721,817 - Echvi_0637 0.76 +0.1
721,823 + Echvi_0637 0.76 +0.2
721,823 + Echvi_0637 0.76 -1.7
721,823 + Echvi_0637 0.76 -0.2
721,831 - Echvi_0637 0.77 +0.6
721,846 + Echvi_0637 0.77 -2.3
721,847 - Echvi_0637 0.77 -0.4
721,849 - Echvi_0637 0.78 +1.3
721,849 - Echvi_0637 0.78 +1.1
721,849 - Echvi_0637 0.78 +1.6
721,849 - Echvi_0637 0.78 -0.6
721,849 - Echvi_0637 0.78 -0.0
721,868 + Echvi_0637 0.78 -0.8
721,886 - Echvi_0637 0.79 +1.0
721,985 + Echvi_0637 0.84 -0.3
721,985 + Echvi_0637 0.84 -0.6
721,985 + Echvi_0637 0.84 -0.4
721,985 + Echvi_0637 0.84 +0.7
721,986 - Echvi_0637 0.84 +0.8
721,986 - Echvi_0637 0.84 +1.3
721,986 - Echvi_0637 0.84 +1.4
721,986 - Echvi_0637 0.84 -0.9
721,988 + Echvi_0637 0.84 +3.0
721,989 - Echvi_0637 0.84 +0.1
721,989 - Echvi_0637 0.84 +0.3
721,997 + Echvi_0637 0.85 -0.1
721,997 + Echvi_0637 0.85 +0.5
722,012 + Echvi_0637 0.85 -0.1
722,014 + Echvi_0637 0.86 -0.0
722,094 - Echvi_0637 0.89 +0.3
722,094 - Echvi_0637 0.89 +1.1
722,125 + +0.3
722,134 + -0.8
722,171 + -0.2
722,171 + +0.5
722,172 - +1.2
722,277 + +1.9
722,277 + +2.6
722,278 - +0.2
722,292 + -1.0
722,293 - -0.2
722,314 + +0.0
722,333 + -0.4
722,333 + -1.2
722,333 + -1.2
722,333 + -0.2
722,333 + -2.4
722,334 - -1.8
722,337 + -0.1
722,337 + -0.0
722,338 - -0.4
722,338 - -0.9
722,367 + +0.1
722,432 + -0.5
722,432 + -1.5
722,433 - -1.2
722,591 - Echvi_0638 0.27 +0.8
722,659 - Echvi_0638 0.37 +1.2
722,742 + Echvi_0638 0.48 -2.9
722,743 - Echvi_0638 0.49 +2.0
722,748 + Echvi_0638 0.49 +0.6
722,797 - Echvi_0638 0.56 -0.5
722,829 - Echvi_0638 0.61 +1.1
722,912 - Echvi_0638 0.72 +3.0
722,914 + Echvi_0638 0.72 +1.9
722,914 + Echvi_0638 0.72 +0.7
722,915 - Echvi_0638 0.73 +1.4
722,915 - Echvi_0638 0.73 +0.7
722,986 + Echvi_0638 0.82 +0.2
722,986 + Echvi_0638 0.82 +0.8
722,987 - Echvi_0638 0.83 -0.4
723,005 + Echvi_0638 0.85 -0.2
723,093 - -1.7
723,109 + -0.8
723,127 - +2.1
723,149 - -2.3
723,156 + -0.4
723,156 + +0.7
723,157 - -1.0
723,265 + +0.6
723,265 + -1.0
723,266 - -0.1
723,266 - -0.6
723,298 + -0.2
723,298 + -0.5
723,298 + -0.2
723,298 + -1.4
723,299 - +0.6
723,382 + -1.4
723,382 + -0.2
723,382 + -1.2
723,407 - -0.5
723,453 + -0.2
723,453 + -0.2
723,498 - Echvi_0639 0.21 +0.5
723,498 - Echvi_0639 0.21 -1.1
723,503 + Echvi_0639 0.23 -2.5
723,503 + Echvi_0639 0.23 -0.8
723,503 + Echvi_0639 0.23 +1.8
723,503 + Echvi_0639 0.23 +0.1
723,503 + Echvi_0639 0.23 -1.1
723,503 + Echvi_0639 0.23 +0.8
723,504 - Echvi_0639 0.23 -0.8
723,504 - Echvi_0639 0.23 -0.3
723,504 - Echvi_0639 0.23 -2.0
723,504 - Echvi_0639 0.23 -0.8
723,506 + Echvi_0639 0.24 -1.4
723,506 + Echvi_0639 0.24 -2.4
723,507 - Echvi_0639 0.24 +1.5
723,507 - Echvi_0639 0.24 -0.4
723,507 - Echvi_0639 0.24 -0.2
723,507 - Echvi_0639 0.24 +0.0
723,507 - Echvi_0639 0.24 +0.2
723,507 - Echvi_0639 0.24 -0.2
723,507 - Echvi_0639 0.24 -1.3
723,568 + Echvi_0639 0.49 -2.1
723,740 + +0.8
723,824 + -1.2
723,824 + -1.2
723,825 - -0.6
723,825 - -0.6
723,899 - Echvi_0640 0.34 -0.5
723,926 - Echvi_0640 0.43 -0.3
723,983 + Echvi_0640 0.63 +0.8
723,984 - Echvi_0640 0.63 +1.5
724,003 + Echvi_0640 0.69 +0.3
724,010 - Echvi_0640 0.72 -0.2
724,010 - Echvi_0640 0.72 -1.2
724,016 - Echvi_0640 0.74 -1.1
724,102 - -0.2

Or see this region's nucleotide sequence