Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0586

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0585 and Echvi_0586 are separated by 159 nucleotidesEchvi_0586 and Echvi_0587 are separated by 59 nucleotides Echvi_0585: Echvi_0585 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase., at 662,895 to 664,133 _0585 Echvi_0586: Echvi_0586 - DNA-binding ferritin-like protein (oxidative damage protectant), at 664,293 to 664,763 _0586 Echvi_0587: Echvi_0587 - ABC-type Na+ efflux pump, permease component, at 664,823 to 666,133 _0587 Position (kb) 664 665Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 663.339 kb on + strand, within Echvi_0585at 663.339 kb on + strand, within Echvi_0585at 663.370 kb on + strand, within Echvi_0585at 663.371 kb on - strand, within Echvi_0585at 663.413 kb on + strand, within Echvi_0585at 663.414 kb on - strand, within Echvi_0585at 663.546 kb on + strand, within Echvi_0585at 663.547 kb on - strand, within Echvi_0585at 663.569 kb on + strand, within Echvi_0585at 663.569 kb on + strand, within Echvi_0585at 663.570 kb on - strand, within Echvi_0585at 663.570 kb on - strand, within Echvi_0585at 663.570 kb on - strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.667 kb on + strand, within Echvi_0585at 663.668 kb on - strand, within Echvi_0585at 663.677 kb on - strand, within Echvi_0585at 663.709 kb on + strand, within Echvi_0585at 663.710 kb on - strand, within Echvi_0585at 663.712 kb on + strand, within Echvi_0585at 663.712 kb on + strand, within Echvi_0585at 663.748 kb on + strand, within Echvi_0585at 663.792 kb on + strand, within Echvi_0585at 663.824 kb on + strand, within Echvi_0585at 663.825 kb on - strand, within Echvi_0585at 663.935 kb on + strand, within Echvi_0585at 663.935 kb on + strand, within Echvi_0585at 663.935 kb on + strand, within Echvi_0585at 663.946 kb on + strand, within Echvi_0585at 663.946 kb on + strand, within Echvi_0585at 663.947 kb on - strand, within Echvi_0585at 663.947 kb on - strand, within Echvi_0585at 663.965 kb on - strand, within Echvi_0585at 663.971 kb on + strand, within Echvi_0585at 664.014 kb on - strandat 664.014 kb on - strandat 664.019 kb on + strandat 664.019 kb on + strandat 664.019 kb on + strandat 664.020 kb on - strandat 664.021 kb on + strandat 664.021 kb on + strandat 664.022 kb on - strandat 664.024 kb on + strandat 664.024 kb on + strandat 664.024 kb on + strandat 664.024 kb on + strandat 664.025 kb on - strandat 664.025 kb on - strandat 664.029 kb on - strandat 664.038 kb on - strandat 664.038 kb on - strandat 664.040 kb on + strandat 664.075 kb on - strandat 664.093 kb on + strandat 664.095 kb on + strandat 664.095 kb on + strandat 664.096 kb on - strandat 664.134 kb on + strandat 664.135 kb on - strandat 664.163 kb on - strandat 664.172 kb on + strandat 664.176 kb on + strandat 664.176 kb on + strandat 664.176 kb on + strandat 664.177 kb on - strandat 664.177 kb on - strandat 664.177 kb on - strandat 664.177 kb on - strandat 664.177 kb on - strandat 664.178 kb on + strandat 664.196 kb on - strandat 664.196 kb on - strandat 664.196 kb on - strandat 664.199 kb on + strandat 664.199 kb on + strandat 664.200 kb on - strandat 664.203 kb on - strandat 664.203 kb on - strandat 664.219 kb on - strandat 664.287 kb on + strandat 664.289 kb on + strandat 664.289 kb on + strandat 664.290 kb on - strandat 664.301 kb on + strandat 664.328 kb on + strandat 664.380 kb on + strand, within Echvi_0586at 664.384 kb on - strand, within Echvi_0586at 664.461 kb on + strand, within Echvi_0586at 664.509 kb on - strand, within Echvi_0586at 664.545 kb on + strand, within Echvi_0586at 664.545 kb on + strand, within Echvi_0586at 664.711 kb on - strand, within Echvi_0586at 664.711 kb on - strand, within Echvi_0586at 664.713 kb on - strand, within Echvi_0586at 664.757 kb on + strandat 664.758 kb on - strandat 664.758 kb on - strandat 664.819 kb on + strandat 664.819 kb on + strandat 664.824 kb on + strandat 664.824 kb on + strandat 664.860 kb on + strandat 664.888 kb on + strandat 664.901 kb on + strandat 664.901 kb on + strandat 664.902 kb on - strandat 665.021 kb on - strand, within Echvi_0587at 665.021 kb on - strand, within Echvi_0587at 665.080 kb on + strand, within Echvi_0587at 665.190 kb on + strand, within Echvi_0587at 665.506 kb on + strand, within Echvi_0587at 665.545 kb on + strand, within Echvi_0587at 665.550 kb on + strand, within Echvi_0587at 665.551 kb on - strand, within Echvi_0587at 665.568 kb on + strand, within Echvi_0587at 665.568 kb on + strand, within Echvi_0587at 665.569 kb on - strand, within Echvi_0587at 665.680 kb on + strand, within Echvi_0587at 665.732 kb on + strand, within Echvi_0587at 665.734 kb on + strand, within Echvi_0587at 665.734 kb on + strand, within Echvi_0587at 665.735 kb on - strand, within Echvi_0587at 665.735 kb on - strand, within Echvi_0587at 665.741 kb on - strand, within Echvi_0587

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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663,339 + Echvi_0585 0.36 +0.8
663,339 + Echvi_0585 0.36 -0.7
663,370 + Echvi_0585 0.38 +0.8
663,371 - Echvi_0585 0.38 -0.3
663,413 + Echvi_0585 0.42 -0.0
663,414 - Echvi_0585 0.42 +0.6
663,546 + Echvi_0585 0.53 +0.7
663,547 - Echvi_0585 0.53 +0.1
663,569 + Echvi_0585 0.54 -1.5
663,569 + Echvi_0585 0.54 +1.1
663,570 - Echvi_0585 0.54 +0.4
663,570 - Echvi_0585 0.54 -1.4
663,570 - Echvi_0585 0.54 +0.7
663,667 + Echvi_0585 0.62 +0.8
663,667 + Echvi_0585 0.62 +0.3
663,667 + Echvi_0585 0.62 +0.9
663,667 + Echvi_0585 0.62 +0.1
663,668 - Echvi_0585 0.62 +0.2
663,677 - Echvi_0585 0.63 -0.1
663,709 + Echvi_0585 0.66 -2.9
663,710 - Echvi_0585 0.66 +0.7
663,712 + Echvi_0585 0.66 -3.0
663,712 + Echvi_0585 0.66 -0.3
663,748 + Echvi_0585 0.69 -0.3
663,792 + Echvi_0585 0.72 -1.6
663,824 + Echvi_0585 0.75 +0.2
663,825 - Echvi_0585 0.75 -3.0
663,935 + Echvi_0585 0.84 +0.8
663,935 + Echvi_0585 0.84 +1.0
663,935 + Echvi_0585 0.84 -0.1
663,946 + Echvi_0585 0.85 +1.2
663,946 + Echvi_0585 0.85 +0.4
663,947 - Echvi_0585 0.85 +1.2
663,947 - Echvi_0585 0.85 +2.4
663,965 - Echvi_0585 0.86 +0.9
663,971 + Echvi_0585 0.87 -0.5
664,014 - +1.4
664,014 - +0.1
664,019 + +1.9
664,019 + +0.0
664,019 + -0.6
664,020 - +0.5
664,021 + -1.7
664,021 + -0.7
664,022 - -0.4
664,024 + -0.8
664,024 + -0.7
664,024 + -0.0
664,024 + +1.0
664,025 - -0.2
664,025 - -1.1
664,029 - +0.3
664,038 - -0.6
664,038 - -0.5
664,040 + -0.2
664,075 - -0.8
664,093 + +0.7
664,095 + -0.6
664,095 + -0.8
664,096 - +0.3
664,134 + +1.2
664,135 - +1.1
664,163 - +0.3
664,172 + -1.4
664,176 + -1.8
664,176 + +0.3
664,176 + +1.8
664,177 - +1.2
664,177 - +0.8
664,177 - -0.1
664,177 - -0.6
664,177 - +0.4
664,178 + -1.4
664,196 - -0.9
664,196 - +0.5
664,196 - -0.1
664,199 + +0.4
664,199 + +0.1
664,200 - +0.8
664,203 - -0.6
664,203 - -0.1
664,219 - -0.6
664,287 + -0.5
664,289 + -0.6
664,289 + +0.3
664,290 - +0.4
664,301 + +0.1
664,328 + -0.5
664,380 + Echvi_0586 0.18 +0.1
664,384 - Echvi_0586 0.19 +1.3
664,461 + Echvi_0586 0.36 -0.6
664,509 - Echvi_0586 0.46 +0.7
664,545 + Echvi_0586 0.54 +0.8
664,545 + Echvi_0586 0.54 +0.8
664,711 - Echvi_0586 0.89 +1.3
664,711 - Echvi_0586 0.89 +0.8
664,713 - Echvi_0586 0.89 -0.7
664,757 + -0.1
664,758 - -0.2
664,758 - +0.1
664,819 + +1.2
664,819 + -0.5
664,824 + -0.4
664,824 + -1.3
664,860 + -0.5
664,888 + -0.5
664,901 + -0.4
664,901 + -0.6
664,902 - -1.8
665,021 - Echvi_0587 0.15 +0.7
665,021 - Echvi_0587 0.15 +0.4
665,080 + Echvi_0587 0.20 +3.3
665,190 + Echvi_0587 0.28 -0.0
665,506 + Echvi_0587 0.52 -0.5
665,545 + Echvi_0587 0.55 +0.6
665,550 + Echvi_0587 0.55 -2.1
665,551 - Echvi_0587 0.56 -0.6
665,568 + Echvi_0587 0.57 +0.6
665,568 + Echvi_0587 0.57 -0.1
665,569 - Echvi_0587 0.57 +0.4
665,680 + Echvi_0587 0.65 +0.8
665,732 + Echvi_0587 0.69 -0.6
665,734 + Echvi_0587 0.69 +0.1
665,734 + Echvi_0587 0.69 -1.3
665,735 - Echvi_0587 0.70 +0.7
665,735 - Echvi_0587 0.70 +1.6
665,741 - Echvi_0587 0.70 -0.4

Or see this region's nucleotide sequence