Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0405 and Echvi_0406 are separated by 177 nucleotides Echvi_0406 and Echvi_0407 are separated by 12 nucleotides
Echvi_0405: Echvi_0405 - L-arabinose isomerase, at 440,755 to 442,245
_0405
Echvi_0406: Echvi_0406 - hypothetical protein, at 442,423 to 443,328
_0406
Echvi_0407: Echvi_0407 - SusD family., at 443,341 to 444,927
_0407
Position (kb) 442
443
444 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.630 kb on + strand, within Echvi_0405 at 441.631 kb on - strand, within Echvi_0405 at 441.639 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.649 kb on + strand, within Echvi_0405 at 441.650 kb on - strand, within Echvi_0405 at 441.650 kb on - strand, within Echvi_0405 at 441.651 kb on + strand, within Echvi_0405 at 441.652 kb on - strand, within Echvi_0405 at 441.682 kb on + strand, within Echvi_0405 at 441.682 kb on + strand, within Echvi_0405 at 441.683 kb on - strand, within Echvi_0405 at 441.831 kb on - strand, within Echvi_0405 at 441.842 kb on + strand, within Echvi_0405 at 441.843 kb on - strand, within Echvi_0405 at 441.861 kb on - strand, within Echvi_0405 at 441.874 kb on - strand, within Echvi_0405 at 441.896 kb on - strand, within Echvi_0405 at 441.901 kb on - strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.904 kb on + strand, within Echvi_0405 at 441.951 kb on - strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.954 kb on + strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.955 kb on - strand, within Echvi_0405 at 441.972 kb on + strand, within Echvi_0405 at 441.972 kb on + strand, within Echvi_0405 at 442.048 kb on + strand, within Echvi_0405 at 442.053 kb on + strand, within Echvi_0405 at 442.053 kb on + strand, within Echvi_0405 at 442.053 kb on + strand, within Echvi_0405 at 442.062 kb on + strand, within Echvi_0405 at 442.087 kb on + strand, within Echvi_0405 at 442.088 kb on - strand, within Echvi_0405 at 442.139 kb on + strand at 442.140 kb on - strand at 442.148 kb on + strand at 442.304 kb on + strand at 442.319 kb on + strand at 442.320 kb on - strand at 442.320 kb on - strand at 442.323 kb on + strand at 442.324 kb on - strand at 442.328 kb on + strand at 442.403 kb on + strand at 442.403 kb on + strand at 442.403 kb on + strand at 442.404 kb on - strand at 442.408 kb on + strand at 442.410 kb on + strand at 442.410 kb on + strand at 442.411 kb on - strand at 442.411 kb on - strand at 442.411 kb on - strand at 442.413 kb on + strand at 442.414 kb on - strand at 442.424 kb on + strand at 442.425 kb on - strand at 442.467 kb on + strand at 442.467 kb on + strand at 442.468 kb on - strand at 442.468 kb on - strand at 442.477 kb on + strand at 442.477 kb on + strand at 442.477 kb on + strand at 442.478 kb on - strand at 442.478 kb on - strand at 442.478 kb on - strand at 442.485 kb on - strand at 442.511 kb on + strand at 442.511 kb on + strand at 442.511 kb on + strand at 442.512 kb on - strand at 442.512 kb on - strand at 442.512 kb on - strand at 442.525 kb on - strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.527 kb on + strand, within Echvi_0406 at 442.528 kb on - strand, within Echvi_0406 at 442.528 kb on - strand, within Echvi_0406 at 442.530 kb on - strand, within Echvi_0406 at 442.531 kb on + strand, within Echvi_0406 at 442.532 kb on - strand, within Echvi_0406 at 442.564 kb on + strand, within Echvi_0406 at 442.566 kb on + strand, within Echvi_0406 at 442.566 kb on + strand, within Echvi_0406 at 442.655 kb on + strand, within Echvi_0406 at 442.673 kb on + strand, within Echvi_0406 at 442.674 kb on - strand, within Echvi_0406 at 442.728 kb on + strand, within Echvi_0406 at 442.749 kb on + strand, within Echvi_0406 at 442.795 kb on - strand, within Echvi_0406 at 442.832 kb on - strand, within Echvi_0406 at 442.840 kb on - strand, within Echvi_0406 at 442.899 kb on - strand, within Echvi_0406 at 442.930 kb on + strand, within Echvi_0406 at 442.981 kb on - strand, within Echvi_0406 at 443.055 kb on + strand, within Echvi_0406 at 443.177 kb on + strand, within Echvi_0406 at 443.184 kb on + strand, within Echvi_0406 at 443.203 kb on - strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.214 kb on + strand, within Echvi_0406 at 443.216 kb on + strand, within Echvi_0406 at 443.216 kb on + strand, within Echvi_0406 at 443.216 kb on + strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.217 kb on - strand, within Echvi_0406 at 443.220 kb on + strand, within Echvi_0406 at 443.220 kb on + strand, within Echvi_0406 at 443.221 kb on - strand, within Echvi_0406 at 443.221 kb on - strand, within Echvi_0406 at 443.221 kb on - strand, within Echvi_0406 at 443.240 kb on - strand at 443.266 kb on + strand at 443.267 kb on - strand at 443.308 kb on + strand at 443.311 kb on + strand at 443.328 kb on + strand at 443.329 kb on - strand at 443.333 kb on - strand at 443.345 kb on + strand at 443.440 kb on + strand at 443.440 kb on + strand at 443.440 kb on + strand at 443.441 kb on - strand at 443.483 kb on + strand at 443.484 kb on - strand at 443.696 kb on + strand, within Echvi_0407 at 443.696 kb on + strand, within Echvi_0407 at 443.696 kb on + strand, within Echvi_0407 at 443.696 kb on + strand, within Echvi_0407 at 443.697 kb on - strand, within Echvi_0407 at 443.701 kb on + strand, within Echvi_0407 at 443.709 kb on + strand, within Echvi_0407 at 443.822 kb on + strand, within Echvi_0407 at 443.838 kb on + strand, within Echvi_0407 at 443.870 kb on + strand, within Echvi_0407 at 443.870 kb on + strand, within Echvi_0407 at 443.879 kb on - strand, within Echvi_0407 at 443.893 kb on + strand, within Echvi_0407 at 443.893 kb on + strand, within Echvi_0407 at 443.894 kb on - strand, within Echvi_0407 at 443.897 kb on + strand, within Echvi_0407 at 443.897 kb on + strand, within Echvi_0407 at 443.901 kb on + strand, within Echvi_0407 at 443.901 kb on + strand, within Echvi_0407 at 443.902 kb on - strand, within Echvi_0407 at 443.911 kb on + strand, within Echvi_0407 at 443.911 kb on + strand, within Echvi_0407 at 443.911 kb on + strand, within Echvi_0407 at 443.912 kb on - strand, within Echvi_0407 at 443.979 kb on - strand, within Echvi_0407 at 444.049 kb on + strand, within Echvi_0407 at 444.049 kb on + strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.050 kb on - strand, within Echvi_0407 at 444.051 kb on + strand, within Echvi_0407 at 444.052 kb on - strand, within Echvi_0407 at 444.052 kb on - strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.071 kb on + strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.072 kb on - strand, within Echvi_0407 at 444.074 kb on + strand, within Echvi_0407 at 444.074 kb on + strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.075 kb on - strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.078 kb on + strand, within Echvi_0407 at 444.079 kb on - strand, within Echvi_0407 at 444.079 kb on - strand, within Echvi_0407 at 444.080 kb on + strand, within Echvi_0407 at 444.080 kb on + strand, within Echvi_0407 at 444.081 kb on - strand, within Echvi_0407 at 444.081 kb on - strand, within Echvi_0407 at 444.147 kb on - strand, within Echvi_0407 at 444.182 kb on + strand, within Echvi_0407 at 444.253 kb on - strand, within Echvi_0407 at 444.307 kb on - strand, within Echvi_0407 at 444.307 kb on - strand, within Echvi_0407
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 441,630 + Echvi_0405 0.59 -0.2 441,630 + Echvi_0405 0.59 -1.0 441,630 + Echvi_0405 0.59 +0.1 441,630 + Echvi_0405 0.59 +1.1 441,631 - Echvi_0405 0.59 -0.2 441,639 + Echvi_0405 0.59 +0.2 441,649 + Echvi_0405 0.60 +0.9 441,649 + Echvi_0405 0.60 -0.6 441,649 + Echvi_0405 0.60 +0.7 441,649 + Echvi_0405 0.60 -1.6 441,649 + Echvi_0405 0.60 -1.1 441,650 - Echvi_0405 0.60 -0.7 441,650 - Echvi_0405 0.60 -0.5 441,651 + Echvi_0405 0.60 +0.5 441,652 - Echvi_0405 0.60 +0.4 441,682 + Echvi_0405 0.62 -0.2 441,682 + Echvi_0405 0.62 -0.5 441,683 - Echvi_0405 0.62 +1.7 441,831 - Echvi_0405 0.72 +4.1 441,842 + Echvi_0405 0.73 -0.3 441,843 - Echvi_0405 0.73 -0.6 441,861 - Echvi_0405 0.74 -0.8 441,874 - Echvi_0405 0.75 -1.3 441,896 - Echvi_0405 0.77 +0.3 441,901 - Echvi_0405 0.77 +1.5 441,904 + Echvi_0405 0.77 +1.5 441,904 + Echvi_0405 0.77 -0.8 441,904 + Echvi_0405 0.77 +0.0 441,904 + Echvi_0405 0.77 +2.7 441,904 + Echvi_0405 0.77 +2.2 441,951 - Echvi_0405 0.80 +0.7 441,954 + Echvi_0405 0.80 +1.3 441,954 + Echvi_0405 0.80 +0.9 441,954 + Echvi_0405 0.80 -1.5 441,954 + Echvi_0405 0.80 -1.1 441,954 + Echvi_0405 0.80 -0.1 441,954 + Echvi_0405 0.80 +0.2 441,954 + Echvi_0405 0.80 -0.4 441,954 + Echvi_0405 0.80 +0.2 441,954 + Echvi_0405 0.80 -3.2 441,954 + Echvi_0405 0.80 -1.4 441,955 - Echvi_0405 0.80 -0.3 441,955 - Echvi_0405 0.80 +0.5 441,955 - Echvi_0405 0.80 -0.7 441,955 - Echvi_0405 0.80 +0.4 441,972 + Echvi_0405 0.82 -0.7 441,972 + Echvi_0405 0.82 -1.4 442,048 + Echvi_0405 0.87 +0.4 442,053 + Echvi_0405 0.87 +0.6 442,053 + Echvi_0405 0.87 -0.9 442,053 + Echvi_0405 0.87 -1.3 442,062 + Echvi_0405 0.88 -0.5 442,087 + Echvi_0405 0.89 -1.0 442,088 - Echvi_0405 0.89 +1.7 442,139 + -0.6 442,140 - -0.4 442,148 + -1.3 442,304 + -0.2 442,319 + -0.3 442,320 - -0.8 442,320 - -0.9 442,323 + -0.1 442,324 - +1.3 442,328 + -0.5 442,403 + -0.8 442,403 + +0.9 442,403 + -0.4 442,404 - -0.3 442,408 + +1.3 442,410 + +1.7 442,410 + -0.8 442,411 - +0.7 442,411 - +0.4 442,411 - +0.2 442,413 + -0.4 442,414 - +0.0 442,424 + +1.9 442,425 - -1.0 442,467 + -1.3 442,467 + +1.1 442,468 - -0.3 442,468 - -1.3 442,477 + +1.7 442,477 + +0.5 442,477 + +0.2 442,478 - -0.8 442,478 - -1.7 442,478 - -1.7 442,485 - +1.1 442,511 + -1.2 442,511 + +0.5 442,511 + -1.4 442,512 - -0.5 442,512 - +1.3 442,512 - +0.0 442,525 - Echvi_0406 0.11 -1.9 442,527 + Echvi_0406 0.11 -0.3 442,527 + Echvi_0406 0.11 +0.7 442,527 + Echvi_0406 0.11 -1.8 442,527 + Echvi_0406 0.11 +1.1 442,527 + Echvi_0406 0.11 +0.6 442,527 + Echvi_0406 0.11 +0.5 442,527 + Echvi_0406 0.11 -1.4 442,527 + Echvi_0406 0.11 -1.0 442,527 + Echvi_0406 0.11 -0.1 442,527 + Echvi_0406 0.11 -3.3 442,527 + Echvi_0406 0.11 -1.3 442,527 + Echvi_0406 0.11 +0.6 442,528 - Echvi_0406 0.12 -1.9 442,528 - Echvi_0406 0.12 +0.7 442,530 - Echvi_0406 0.12 -1.6 442,531 + Echvi_0406 0.12 +0.0 442,532 - Echvi_0406 0.12 -0.8 442,564 + Echvi_0406 0.16 -1.5 442,566 + Echvi_0406 0.16 +1.3 442,566 + Echvi_0406 0.16 -0.6 442,655 + Echvi_0406 0.26 +0.3 442,673 + Echvi_0406 0.28 -1.1 442,674 - Echvi_0406 0.28 -0.4 442,728 + Echvi_0406 0.34 -1.9 442,749 + Echvi_0406 0.36 -0.7 442,795 - Echvi_0406 0.41 -0.9 442,832 - Echvi_0406 0.45 +0.4 442,840 - Echvi_0406 0.46 -2.7 442,899 - Echvi_0406 0.53 -0.3 442,930 + Echvi_0406 0.56 -2.2 442,981 - Echvi_0406 0.62 -0.3 443,055 + Echvi_0406 0.70 -2.9 443,177 + Echvi_0406 0.83 -0.8 443,184 + Echvi_0406 0.84 -0.3 443,203 - Echvi_0406 0.86 -2.8 443,214 + Echvi_0406 0.87 -2.0 443,214 + Echvi_0406 0.87 +0.1 443,214 + Echvi_0406 0.87 -0.2 443,214 + Echvi_0406 0.87 +0.9 443,214 + Echvi_0406 0.87 -1.1 443,216 + Echvi_0406 0.88 -0.7 443,216 + Echvi_0406 0.88 -1.2 443,216 + Echvi_0406 0.88 -1.1 443,217 - Echvi_0406 0.88 +0.6 443,217 - Echvi_0406 0.88 -1.6 443,217 - Echvi_0406 0.88 +0.3 443,217 - Echvi_0406 0.88 -0.4 443,220 + Echvi_0406 0.88 -0.2 443,220 + Echvi_0406 0.88 +0.6 443,221 - Echvi_0406 0.88 +1.7 443,221 - Echvi_0406 0.88 +1.3 443,221 - Echvi_0406 0.88 +0.1 443,240 - +0.7 443,266 + +0.7 443,267 - -0.7 443,308 + -3.8 443,311 + +0.2 443,328 + -1.9 443,329 - -0.1 443,333 - -0.5 443,345 + -1.1 443,440 + +0.3 443,440 + +0.0 443,440 + -1.0 443,441 - -0.0 443,483 + +0.9 443,484 - -1.6 443,696 + Echvi_0407 0.22 -1.9 443,696 + Echvi_0407 0.22 -2.4 443,696 + Echvi_0407 0.22 +0.7 443,696 + Echvi_0407 0.22 +1.3 443,697 - Echvi_0407 0.22 -0.8 443,701 + Echvi_0407 0.23 -1.0 443,709 + Echvi_0407 0.23 +0.6 443,822 + Echvi_0407 0.30 +0.1 443,838 + Echvi_0407 0.31 +0.1 443,870 + Echvi_0407 0.33 -2.1 443,870 + Echvi_0407 0.33 -2.6 443,879 - Echvi_0407 0.34 +0.5 443,893 + Echvi_0407 0.35 -0.0 443,893 + Echvi_0407 0.35 -0.1 443,894 - Echvi_0407 0.35 -1.0 443,897 + Echvi_0407 0.35 -0.1 443,897 + Echvi_0407 0.35 -1.0 443,901 + Echvi_0407 0.35 +0.1 443,901 + Echvi_0407 0.35 -0.3 443,902 - Echvi_0407 0.35 -1.4 443,911 + Echvi_0407 0.36 +0.5 443,911 + Echvi_0407 0.36 +0.6 443,911 + Echvi_0407 0.36 +0.3 443,912 - Echvi_0407 0.36 +0.7 443,979 - Echvi_0407 0.40 +1.3 444,049 + Echvi_0407 0.45 +0.5 444,049 + Echvi_0407 0.45 +1.7 444,050 - Echvi_0407 0.45 -2.2 444,050 - Echvi_0407 0.45 -0.5 444,050 - Echvi_0407 0.45 -1.5 444,050 - Echvi_0407 0.45 -0.1 444,050 - Echvi_0407 0.45 -0.3 444,050 - Echvi_0407 0.45 +0.1 444,051 + Echvi_0407 0.45 -1.3 444,052 - Echvi_0407 0.45 -0.5 444,052 - Echvi_0407 0.45 +0.7 444,071 + Echvi_0407 0.46 +0.5 444,071 + Echvi_0407 0.46 +0.7 444,071 + Echvi_0407 0.46 -0.5 444,071 + Echvi_0407 0.46 +0.3 444,072 - Echvi_0407 0.46 +0.7 444,072 - Echvi_0407 0.46 -0.1 444,072 - Echvi_0407 0.46 +0.9 444,072 - Echvi_0407 0.46 -0.1 444,074 + Echvi_0407 0.46 +0.0 444,074 + Echvi_0407 0.46 -1.0 444,075 - Echvi_0407 0.46 -2.3 444,075 - Echvi_0407 0.46 -0.7 444,075 - Echvi_0407 0.46 +0.0 444,075 - Echvi_0407 0.46 +1.1 444,075 - Echvi_0407 0.46 -0.3 444,075 - Echvi_0407 0.46 +0.3 444,078 + Echvi_0407 0.46 +0.4 444,078 + Echvi_0407 0.46 +2.6 444,078 + Echvi_0407 0.46 +1.7 444,078 + Echvi_0407 0.46 +0.3 444,079 - Echvi_0407 0.47 -0.1 444,079 - Echvi_0407 0.47 +0.7 444,080 + Echvi_0407 0.47 -0.8 444,080 + Echvi_0407 0.47 +0.0 444,081 - Echvi_0407 0.47 -1.5 444,081 - Echvi_0407 0.47 -0.5 444,147 - Echvi_0407 0.51 -0.1 444,182 + Echvi_0407 0.53 +1.2 444,253 - Echvi_0407 0.57 -0.7 444,307 - Echvi_0407 0.61 -0.7 444,307 - Echvi_0407 0.61 +0.1
Or see this region's nucleotide sequence