Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0406

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0405 and Echvi_0406 are separated by 177 nucleotidesEchvi_0406 and Echvi_0407 are separated by 12 nucleotides Echvi_0405: Echvi_0405 - L-arabinose isomerase, at 440,755 to 442,245 _0405 Echvi_0406: Echvi_0406 - hypothetical protein, at 442,423 to 443,328 _0406 Echvi_0407: Echvi_0407 - SusD family., at 443,341 to 444,927 _0407 Position (kb) 442 443 444Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.630 kb on + strand, within Echvi_0405at 441.631 kb on - strand, within Echvi_0405at 441.639 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.649 kb on + strand, within Echvi_0405at 441.650 kb on - strand, within Echvi_0405at 441.650 kb on - strand, within Echvi_0405at 441.651 kb on + strand, within Echvi_0405at 441.652 kb on - strand, within Echvi_0405at 441.682 kb on + strand, within Echvi_0405at 441.682 kb on + strand, within Echvi_0405at 441.683 kb on - strand, within Echvi_0405at 441.831 kb on - strand, within Echvi_0405at 441.842 kb on + strand, within Echvi_0405at 441.843 kb on - strand, within Echvi_0405at 441.861 kb on - strand, within Echvi_0405at 441.874 kb on - strand, within Echvi_0405at 441.896 kb on - strand, within Echvi_0405at 441.901 kb on - strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.904 kb on + strand, within Echvi_0405at 441.951 kb on - strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.954 kb on + strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.955 kb on - strand, within Echvi_0405at 441.972 kb on + strand, within Echvi_0405at 441.972 kb on + strand, within Echvi_0405at 442.048 kb on + strand, within Echvi_0405at 442.053 kb on + strand, within Echvi_0405at 442.053 kb on + strand, within Echvi_0405at 442.053 kb on + strand, within Echvi_0405at 442.062 kb on + strand, within Echvi_0405at 442.087 kb on + strand, within Echvi_0405at 442.088 kb on - strand, within Echvi_0405at 442.139 kb on + strandat 442.140 kb on - strandat 442.148 kb on + strandat 442.304 kb on + strandat 442.319 kb on + strandat 442.320 kb on - strandat 442.320 kb on - strandat 442.323 kb on + strandat 442.324 kb on - strandat 442.328 kb on + strandat 442.403 kb on + strandat 442.403 kb on + strandat 442.403 kb on + strandat 442.404 kb on - strandat 442.408 kb on + strandat 442.410 kb on + strandat 442.410 kb on + strandat 442.411 kb on - strandat 442.411 kb on - strandat 442.411 kb on - strandat 442.413 kb on + strandat 442.414 kb on - strandat 442.424 kb on + strandat 442.425 kb on - strandat 442.467 kb on + strandat 442.467 kb on + strandat 442.468 kb on - strandat 442.468 kb on - strandat 442.477 kb on + strandat 442.477 kb on + strandat 442.477 kb on + strandat 442.478 kb on - strandat 442.478 kb on - strandat 442.478 kb on - strandat 442.485 kb on - strandat 442.511 kb on + strandat 442.511 kb on + strandat 442.511 kb on + strandat 442.512 kb on - strandat 442.512 kb on - strandat 442.512 kb on - strandat 442.525 kb on - strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.527 kb on + strand, within Echvi_0406at 442.528 kb on - strand, within Echvi_0406at 442.528 kb on - strand, within Echvi_0406at 442.530 kb on - strand, within Echvi_0406at 442.531 kb on + strand, within Echvi_0406at 442.532 kb on - strand, within Echvi_0406at 442.564 kb on + strand, within Echvi_0406at 442.566 kb on + strand, within Echvi_0406at 442.566 kb on + strand, within Echvi_0406at 442.655 kb on + strand, within Echvi_0406at 442.673 kb on + strand, within Echvi_0406at 442.674 kb on - strand, within Echvi_0406at 442.728 kb on + strand, within Echvi_0406at 442.749 kb on + strand, within Echvi_0406at 442.795 kb on - strand, within Echvi_0406at 442.832 kb on - strand, within Echvi_0406at 442.840 kb on - strand, within Echvi_0406at 442.899 kb on - strand, within Echvi_0406at 442.930 kb on + strand, within Echvi_0406at 442.981 kb on - strand, within Echvi_0406at 443.055 kb on + strand, within Echvi_0406at 443.177 kb on + strand, within Echvi_0406at 443.184 kb on + strand, within Echvi_0406at 443.203 kb on - strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.214 kb on + strand, within Echvi_0406at 443.216 kb on + strand, within Echvi_0406at 443.216 kb on + strand, within Echvi_0406at 443.216 kb on + strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.217 kb on - strand, within Echvi_0406at 443.220 kb on + strand, within Echvi_0406at 443.220 kb on + strand, within Echvi_0406at 443.221 kb on - strand, within Echvi_0406at 443.221 kb on - strand, within Echvi_0406at 443.221 kb on - strand, within Echvi_0406at 443.240 kb on - strandat 443.266 kb on + strandat 443.267 kb on - strandat 443.308 kb on + strandat 443.311 kb on + strandat 443.328 kb on + strandat 443.329 kb on - strandat 443.333 kb on - strandat 443.345 kb on + strandat 443.440 kb on + strandat 443.440 kb on + strandat 443.440 kb on + strandat 443.441 kb on - strandat 443.483 kb on + strandat 443.484 kb on - strandat 443.696 kb on + strand, within Echvi_0407at 443.696 kb on + strand, within Echvi_0407at 443.696 kb on + strand, within Echvi_0407at 443.696 kb on + strand, within Echvi_0407at 443.697 kb on - strand, within Echvi_0407at 443.701 kb on + strand, within Echvi_0407at 443.709 kb on + strand, within Echvi_0407at 443.822 kb on + strand, within Echvi_0407at 443.838 kb on + strand, within Echvi_0407at 443.870 kb on + strand, within Echvi_0407at 443.870 kb on + strand, within Echvi_0407at 443.879 kb on - strand, within Echvi_0407at 443.893 kb on + strand, within Echvi_0407at 443.893 kb on + strand, within Echvi_0407at 443.894 kb on - strand, within Echvi_0407at 443.897 kb on + strand, within Echvi_0407at 443.897 kb on + strand, within Echvi_0407at 443.901 kb on + strand, within Echvi_0407at 443.901 kb on + strand, within Echvi_0407at 443.902 kb on - strand, within Echvi_0407at 443.911 kb on + strand, within Echvi_0407at 443.911 kb on + strand, within Echvi_0407at 443.911 kb on + strand, within Echvi_0407at 443.912 kb on - strand, within Echvi_0407at 443.979 kb on - strand, within Echvi_0407at 444.049 kb on + strand, within Echvi_0407at 444.049 kb on + strand, within Echvi_0407at 444.050 kb on - strand, within Echvi_0407at 444.050 kb on - strand, within Echvi_0407at 444.050 kb on - strand, within Echvi_0407at 444.050 kb on - strand, within Echvi_0407at 444.050 kb on - strand, within Echvi_0407at 444.050 kb on - strand, within Echvi_0407at 444.051 kb on + strand, within Echvi_0407at 444.052 kb on - strand, within Echvi_0407at 444.052 kb on - strand, within Echvi_0407at 444.071 kb on + strand, within Echvi_0407at 444.071 kb on + strand, within Echvi_0407at 444.071 kb on + strand, within Echvi_0407at 444.071 kb on + strand, within Echvi_0407at 444.072 kb on - strand, within Echvi_0407at 444.072 kb on - strand, within Echvi_0407at 444.072 kb on - strand, within Echvi_0407at 444.072 kb on - strand, within Echvi_0407at 444.074 kb on + strand, within Echvi_0407at 444.074 kb on + strand, within Echvi_0407at 444.075 kb on - strand, within Echvi_0407at 444.075 kb on - strand, within Echvi_0407at 444.075 kb on - strand, within Echvi_0407at 444.075 kb on - strand, within Echvi_0407at 444.075 kb on - strand, within Echvi_0407at 444.075 kb on - strand, within Echvi_0407at 444.078 kb on + strand, within Echvi_0407at 444.078 kb on + strand, within Echvi_0407at 444.078 kb on + strand, within Echvi_0407at 444.078 kb on + strand, within Echvi_0407at 444.079 kb on - strand, within Echvi_0407at 444.079 kb on - strand, within Echvi_0407at 444.080 kb on + strand, within Echvi_0407at 444.080 kb on + strand, within Echvi_0407at 444.081 kb on - strand, within Echvi_0407at 444.081 kb on - strand, within Echvi_0407at 444.147 kb on - strand, within Echvi_0407at 444.182 kb on + strand, within Echvi_0407at 444.253 kb on - strand, within Echvi_0407at 444.307 kb on - strand, within Echvi_0407at 444.307 kb on - strand, within Echvi_0407

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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441,630 + Echvi_0405 0.59 -0.2
441,630 + Echvi_0405 0.59 -1.0
441,630 + Echvi_0405 0.59 +0.1
441,630 + Echvi_0405 0.59 +1.1
441,631 - Echvi_0405 0.59 -0.2
441,639 + Echvi_0405 0.59 +0.2
441,649 + Echvi_0405 0.60 +0.9
441,649 + Echvi_0405 0.60 -0.6
441,649 + Echvi_0405 0.60 +0.7
441,649 + Echvi_0405 0.60 -1.6
441,649 + Echvi_0405 0.60 -1.1
441,650 - Echvi_0405 0.60 -0.7
441,650 - Echvi_0405 0.60 -0.5
441,651 + Echvi_0405 0.60 +0.5
441,652 - Echvi_0405 0.60 +0.4
441,682 + Echvi_0405 0.62 -0.2
441,682 + Echvi_0405 0.62 -0.5
441,683 - Echvi_0405 0.62 +1.7
441,831 - Echvi_0405 0.72 +4.1
441,842 + Echvi_0405 0.73 -0.3
441,843 - Echvi_0405 0.73 -0.6
441,861 - Echvi_0405 0.74 -0.8
441,874 - Echvi_0405 0.75 -1.3
441,896 - Echvi_0405 0.77 +0.3
441,901 - Echvi_0405 0.77 +1.5
441,904 + Echvi_0405 0.77 +1.5
441,904 + Echvi_0405 0.77 -0.8
441,904 + Echvi_0405 0.77 +0.0
441,904 + Echvi_0405 0.77 +2.7
441,904 + Echvi_0405 0.77 +2.2
441,951 - Echvi_0405 0.80 +0.7
441,954 + Echvi_0405 0.80 +1.3
441,954 + Echvi_0405 0.80 +0.9
441,954 + Echvi_0405 0.80 -1.5
441,954 + Echvi_0405 0.80 -1.1
441,954 + Echvi_0405 0.80 -0.1
441,954 + Echvi_0405 0.80 +0.2
441,954 + Echvi_0405 0.80 -0.4
441,954 + Echvi_0405 0.80 +0.2
441,954 + Echvi_0405 0.80 -3.2
441,954 + Echvi_0405 0.80 -1.4
441,955 - Echvi_0405 0.80 -0.3
441,955 - Echvi_0405 0.80 +0.5
441,955 - Echvi_0405 0.80 -0.7
441,955 - Echvi_0405 0.80 +0.4
441,972 + Echvi_0405 0.82 -0.7
441,972 + Echvi_0405 0.82 -1.4
442,048 + Echvi_0405 0.87 +0.4
442,053 + Echvi_0405 0.87 +0.6
442,053 + Echvi_0405 0.87 -0.9
442,053 + Echvi_0405 0.87 -1.3
442,062 + Echvi_0405 0.88 -0.5
442,087 + Echvi_0405 0.89 -1.0
442,088 - Echvi_0405 0.89 +1.7
442,139 + -0.6
442,140 - -0.4
442,148 + -1.3
442,304 + -0.2
442,319 + -0.3
442,320 - -0.8
442,320 - -0.9
442,323 + -0.1
442,324 - +1.3
442,328 + -0.5
442,403 + -0.8
442,403 + +0.9
442,403 + -0.4
442,404 - -0.3
442,408 + +1.3
442,410 + +1.7
442,410 + -0.8
442,411 - +0.7
442,411 - +0.4
442,411 - +0.2
442,413 + -0.4
442,414 - +0.0
442,424 + +1.9
442,425 - -1.0
442,467 + -1.3
442,467 + +1.1
442,468 - -0.3
442,468 - -1.3
442,477 + +1.7
442,477 + +0.5
442,477 + +0.2
442,478 - -0.8
442,478 - -1.7
442,478 - -1.7
442,485 - +1.1
442,511 + -1.2
442,511 + +0.5
442,511 + -1.4
442,512 - -0.5
442,512 - +1.3
442,512 - +0.0
442,525 - Echvi_0406 0.11 -1.9
442,527 + Echvi_0406 0.11 -0.3
442,527 + Echvi_0406 0.11 +0.7
442,527 + Echvi_0406 0.11 -1.8
442,527 + Echvi_0406 0.11 +1.1
442,527 + Echvi_0406 0.11 +0.6
442,527 + Echvi_0406 0.11 +0.5
442,527 + Echvi_0406 0.11 -1.4
442,527 + Echvi_0406 0.11 -1.0
442,527 + Echvi_0406 0.11 -0.1
442,527 + Echvi_0406 0.11 -3.3
442,527 + Echvi_0406 0.11 -1.3
442,527 + Echvi_0406 0.11 +0.6
442,528 - Echvi_0406 0.12 -1.9
442,528 - Echvi_0406 0.12 +0.7
442,530 - Echvi_0406 0.12 -1.6
442,531 + Echvi_0406 0.12 +0.0
442,532 - Echvi_0406 0.12 -0.8
442,564 + Echvi_0406 0.16 -1.5
442,566 + Echvi_0406 0.16 +1.3
442,566 + Echvi_0406 0.16 -0.6
442,655 + Echvi_0406 0.26 +0.3
442,673 + Echvi_0406 0.28 -1.1
442,674 - Echvi_0406 0.28 -0.4
442,728 + Echvi_0406 0.34 -1.9
442,749 + Echvi_0406 0.36 -0.7
442,795 - Echvi_0406 0.41 -0.9
442,832 - Echvi_0406 0.45 +0.4
442,840 - Echvi_0406 0.46 -2.7
442,899 - Echvi_0406 0.53 -0.3
442,930 + Echvi_0406 0.56 -2.2
442,981 - Echvi_0406 0.62 -0.3
443,055 + Echvi_0406 0.70 -2.9
443,177 + Echvi_0406 0.83 -0.8
443,184 + Echvi_0406 0.84 -0.3
443,203 - Echvi_0406 0.86 -2.8
443,214 + Echvi_0406 0.87 -2.0
443,214 + Echvi_0406 0.87 +0.1
443,214 + Echvi_0406 0.87 -0.2
443,214 + Echvi_0406 0.87 +0.9
443,214 + Echvi_0406 0.87 -1.1
443,216 + Echvi_0406 0.88 -0.7
443,216 + Echvi_0406 0.88 -1.2
443,216 + Echvi_0406 0.88 -1.1
443,217 - Echvi_0406 0.88 +0.6
443,217 - Echvi_0406 0.88 -1.6
443,217 - Echvi_0406 0.88 +0.3
443,217 - Echvi_0406 0.88 -0.4
443,220 + Echvi_0406 0.88 -0.2
443,220 + Echvi_0406 0.88 +0.6
443,221 - Echvi_0406 0.88 +1.7
443,221 - Echvi_0406 0.88 +1.3
443,221 - Echvi_0406 0.88 +0.1
443,240 - +0.7
443,266 + +0.7
443,267 - -0.7
443,308 + -3.8
443,311 + +0.2
443,328 + -1.9
443,329 - -0.1
443,333 - -0.5
443,345 + -1.1
443,440 + +0.3
443,440 + +0.0
443,440 + -1.0
443,441 - -0.0
443,483 + +0.9
443,484 - -1.6
443,696 + Echvi_0407 0.22 -1.9
443,696 + Echvi_0407 0.22 -2.4
443,696 + Echvi_0407 0.22 +0.7
443,696 + Echvi_0407 0.22 +1.3
443,697 - Echvi_0407 0.22 -0.8
443,701 + Echvi_0407 0.23 -1.0
443,709 + Echvi_0407 0.23 +0.6
443,822 + Echvi_0407 0.30 +0.1
443,838 + Echvi_0407 0.31 +0.1
443,870 + Echvi_0407 0.33 -2.1
443,870 + Echvi_0407 0.33 -2.6
443,879 - Echvi_0407 0.34 +0.5
443,893 + Echvi_0407 0.35 -0.0
443,893 + Echvi_0407 0.35 -0.1
443,894 - Echvi_0407 0.35 -1.0
443,897 + Echvi_0407 0.35 -0.1
443,897 + Echvi_0407 0.35 -1.0
443,901 + Echvi_0407 0.35 +0.1
443,901 + Echvi_0407 0.35 -0.3
443,902 - Echvi_0407 0.35 -1.4
443,911 + Echvi_0407 0.36 +0.5
443,911 + Echvi_0407 0.36 +0.6
443,911 + Echvi_0407 0.36 +0.3
443,912 - Echvi_0407 0.36 +0.7
443,979 - Echvi_0407 0.40 +1.3
444,049 + Echvi_0407 0.45 +0.5
444,049 + Echvi_0407 0.45 +1.7
444,050 - Echvi_0407 0.45 -2.2
444,050 - Echvi_0407 0.45 -0.5
444,050 - Echvi_0407 0.45 -1.5
444,050 - Echvi_0407 0.45 -0.1
444,050 - Echvi_0407 0.45 -0.3
444,050 - Echvi_0407 0.45 +0.1
444,051 + Echvi_0407 0.45 -1.3
444,052 - Echvi_0407 0.45 -0.5
444,052 - Echvi_0407 0.45 +0.7
444,071 + Echvi_0407 0.46 +0.5
444,071 + Echvi_0407 0.46 +0.7
444,071 + Echvi_0407 0.46 -0.5
444,071 + Echvi_0407 0.46 +0.3
444,072 - Echvi_0407 0.46 +0.7
444,072 - Echvi_0407 0.46 -0.1
444,072 - Echvi_0407 0.46 +0.9
444,072 - Echvi_0407 0.46 -0.1
444,074 + Echvi_0407 0.46 +0.0
444,074 + Echvi_0407 0.46 -1.0
444,075 - Echvi_0407 0.46 -2.3
444,075 - Echvi_0407 0.46 -0.7
444,075 - Echvi_0407 0.46 +0.0
444,075 - Echvi_0407 0.46 +1.1
444,075 - Echvi_0407 0.46 -0.3
444,075 - Echvi_0407 0.46 +0.3
444,078 + Echvi_0407 0.46 +0.4
444,078 + Echvi_0407 0.46 +2.6
444,078 + Echvi_0407 0.46 +1.7
444,078 + Echvi_0407 0.46 +0.3
444,079 - Echvi_0407 0.47 -0.1
444,079 - Echvi_0407 0.47 +0.7
444,080 + Echvi_0407 0.47 -0.8
444,080 + Echvi_0407 0.47 +0.0
444,081 - Echvi_0407 0.47 -1.5
444,081 - Echvi_0407 0.47 -0.5
444,147 - Echvi_0407 0.51 -0.1
444,182 + Echvi_0407 0.53 +1.2
444,253 - Echvi_0407 0.57 -0.7
444,307 - Echvi_0407 0.61 -0.7
444,307 - Echvi_0407 0.61 +0.1

Or see this region's nucleotide sequence