Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0304

Experiment: L-Alanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0302 and Echvi_0303 are separated by 110 nucleotidesEchvi_0303 and Echvi_0304 are separated by 144 nucleotidesEchvi_0304 and Echvi_0305 are separated by 232 nucleotidesEchvi_0305 and Echvi_0306 are separated by 0 nucleotides Echvi_0302: Echvi_0302 - amidohydrolase, at 312,863 to 314,161 _0302 Echvi_0303: Echvi_0303 - Flavodoxin reductases (ferredoxin-NADPH reductases) family 1, at 314,272 to 314,940 _0303 Echvi_0304: Echvi_0304 - purine nucleoside phosphorylase I, inosine and guanosine-specific, at 315,085 to 315,933 _0304 Echvi_0305: Echvi_0305 - Predicted flavoprotein, at 316,166 to 316,690 _0305 Echvi_0306: Echvi_0306 - cell division protein FtsZ, at 316,691 to 318,295 _0306 Position (kb) 315 316Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 314.141 kb on + strandat 314.141 kb on + strandat 314.159 kb on + strandat 314.171 kb on + strandat 314.242 kb on + strandat 314.242 kb on + strandat 314.243 kb on - strandat 314.244 kb on + strandat 314.245 kb on - strandat 314.245 kb on - strandat 314.245 kb on - strandat 314.248 kb on + strandat 314.273 kb on + strandat 314.287 kb on + strandat 314.287 kb on + strandat 314.364 kb on - strand, within Echvi_0303at 314.508 kb on + strand, within Echvi_0303at 314.508 kb on + strand, within Echvi_0303at 314.509 kb on - strand, within Echvi_0303at 314.509 kb on - strand, within Echvi_0303at 314.565 kb on + strand, within Echvi_0303at 314.566 kb on - strand, within Echvi_0303at 314.589 kb on + strand, within Echvi_0303at 314.743 kb on - strand, within Echvi_0303at 314.743 kb on - strand, within Echvi_0303at 314.781 kb on + strand, within Echvi_0303at 314.782 kb on - strand, within Echvi_0303at 314.847 kb on + strand, within Echvi_0303at 314.878 kb on - strandat 314.945 kb on + strandat 314.945 kb on + strandat 314.945 kb on + strandat 314.946 kb on - strandat 314.946 kb on - strandat 315.022 kb on + strandat 315.023 kb on - strandat 315.031 kb on - strandat 315.120 kb on + strandat 315.121 kb on - strandat 315.124 kb on - strandat 315.205 kb on + strand, within Echvi_0304at 315.205 kb on + strand, within Echvi_0304at 315.206 kb on - strand, within Echvi_0304at 315.342 kb on + strand, within Echvi_0304at 315.363 kb on - strand, within Echvi_0304at 315.515 kb on - strand, within Echvi_0304at 315.515 kb on - strand, within Echvi_0304at 315.516 kb on + strand, within Echvi_0304at 315.516 kb on + strand, within Echvi_0304at 315.516 kb on + strand, within Echvi_0304at 315.517 kb on - strand, within Echvi_0304at 315.646 kb on - strand, within Echvi_0304at 315.650 kb on + strand, within Echvi_0304at 315.651 kb on - strand, within Echvi_0304at 315.659 kb on + strand, within Echvi_0304at 315.659 kb on + strand, within Echvi_0304at 315.659 kb on + strand, within Echvi_0304at 315.744 kb on + strand, within Echvi_0304at 315.774 kb on - strand, within Echvi_0304at 315.774 kb on - strand, within Echvi_0304at 315.807 kb on + strand, within Echvi_0304at 315.808 kb on - strand, within Echvi_0304at 315.808 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.830 kb on - strand, within Echvi_0304at 315.832 kb on + strand, within Echvi_0304at 315.833 kb on - strand, within Echvi_0304at 315.833 kb on - strand, within Echvi_0304at 315.876 kb on - strandat 315.876 kb on - strandat 315.906 kb on - strandat 315.999 kb on + strandat 316.107 kb on - strandat 316.151 kb on + strandat 316.156 kb on - strandat 316.161 kb on + strandat 316.161 kb on + strandat 316.170 kb on + strandat 316.180 kb on + strandat 316.193 kb on - strandat 316.280 kb on - strand, within Echvi_0305at 316.300 kb on + strand, within Echvi_0305at 316.300 kb on + strand, within Echvi_0305at 316.314 kb on + strand, within Echvi_0305at 316.314 kb on + strand, within Echvi_0305at 316.315 kb on - strand, within Echvi_0305at 316.349 kb on - strand, within Echvi_0305at 316.365 kb on + strand, within Echvi_0305at 316.366 kb on - strand, within Echvi_0305at 316.391 kb on - strand, within Echvi_0305at 316.391 kb on - strand, within Echvi_0305at 316.468 kb on + strand, within Echvi_0305at 316.469 kb on - strand, within Echvi_0305at 316.475 kb on - strand, within Echvi_0305at 316.548 kb on + strand, within Echvi_0305at 316.549 kb on - strand, within Echvi_0305at 316.613 kb on - strand, within Echvi_0305at 316.619 kb on - strand, within Echvi_0305at 316.621 kb on + strand, within Echvi_0305at 316.643 kb on + strandat 316.647 kb on + strandat 316.656 kb on + strandat 316.689 kb on - strandat 316.689 kb on - strandat 316.781 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
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314,141 + +1.1
314,141 + -0.0
314,159 + -0.7
314,171 + -0.3
314,242 + +0.6
314,242 + -0.7
314,243 - +0.9
314,244 + +0.6
314,245 - +1.1
314,245 - -1.3
314,245 - -3.1
314,248 + -0.7
314,273 + +1.6
314,287 + +0.4
314,287 + -1.3
314,364 - Echvi_0303 0.14 +0.7
314,508 + Echvi_0303 0.35 -0.3
314,508 + Echvi_0303 0.35 -0.7
314,509 - Echvi_0303 0.35 -1.3
314,509 - Echvi_0303 0.35 -1.6
314,565 + Echvi_0303 0.44 -1.3
314,566 - Echvi_0303 0.44 -0.5
314,589 + Echvi_0303 0.47 -0.1
314,743 - Echvi_0303 0.70 +1.5
314,743 - Echvi_0303 0.70 -1.2
314,781 + Echvi_0303 0.76 +0.4
314,782 - Echvi_0303 0.76 +1.9
314,847 + Echvi_0303 0.86 +0.8
314,878 - -2.1
314,945 + -1.2
314,945 + +1.5
314,945 + +0.6
314,946 - -0.5
314,946 - -1.3
315,022 + +0.3
315,023 - -2.7
315,031 - -0.7
315,120 + -0.3
315,121 - -0.3
315,124 - +0.5
315,205 + Echvi_0304 0.14 +0.5
315,205 + Echvi_0304 0.14 +0.2
315,206 - Echvi_0304 0.14 -0.2
315,342 + Echvi_0304 0.30 -0.2
315,363 - Echvi_0304 0.33 +0.8
315,515 - Echvi_0304 0.51 +0.1
315,515 - Echvi_0304 0.51 -1.0
315,516 + Echvi_0304 0.51 +1.0
315,516 + Echvi_0304 0.51 +1.3
315,516 + Echvi_0304 0.51 +0.6
315,517 - Echvi_0304 0.51 +0.9
315,646 - Echvi_0304 0.66 +1.5
315,650 + Echvi_0304 0.67 +0.4
315,651 - Echvi_0304 0.67 -0.0
315,659 + Echvi_0304 0.68 +1.0
315,659 + Echvi_0304 0.68 +0.5
315,659 + Echvi_0304 0.68 +0.1
315,744 + Echvi_0304 0.78 +0.1
315,774 - Echvi_0304 0.81 +0.9
315,774 - Echvi_0304 0.81 -1.4
315,807 + Echvi_0304 0.85 +0.0
315,808 - Echvi_0304 0.85 +1.7
315,808 - Echvi_0304 0.85 -0.8
315,830 - Echvi_0304 0.88 +0.7
315,830 - Echvi_0304 0.88 -0.0
315,830 - Echvi_0304 0.88 -2.3
315,830 - Echvi_0304 0.88 +0.7
315,832 + Echvi_0304 0.88 -0.7
315,833 - Echvi_0304 0.88 +0.3
315,833 - Echvi_0304 0.88 -1.9
315,876 - -0.0
315,876 - -0.4
315,906 - -1.5
315,999 + +0.3
316,107 - -1.4
316,151 + -2.4
316,156 - -0.3
316,161 + -1.1
316,161 + -1.2
316,170 + +0.3
316,180 + +0.7
316,193 - -0.3
316,280 - Echvi_0305 0.22 +2.4
316,300 + Echvi_0305 0.26 -0.6
316,300 + Echvi_0305 0.26 -0.3
316,314 + Echvi_0305 0.28 -1.8
316,314 + Echvi_0305 0.28 -1.1
316,315 - Echvi_0305 0.28 -0.7
316,349 - Echvi_0305 0.35 +0.6
316,365 + Echvi_0305 0.38 +2.3
316,366 - Echvi_0305 0.38 -0.5
316,391 - Echvi_0305 0.43 +1.7
316,391 - Echvi_0305 0.43 -2.9
316,468 + Echvi_0305 0.58 -0.6
316,469 - Echvi_0305 0.58 +0.1
316,475 - Echvi_0305 0.59 -0.7
316,548 + Echvi_0305 0.73 +0.8
316,549 - Echvi_0305 0.73 +1.4
316,613 - Echvi_0305 0.85 -0.6
316,619 - Echvi_0305 0.86 +1.6
316,621 + Echvi_0305 0.87 +1.3
316,643 + -0.1
316,647 + +2.6
316,656 + +1.3
316,689 - -2.1
316,689 - +2.1
316,781 - +2.3

Or see this region's nucleotide sequence