Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0218 and Echvi_0219 are separated by 208 nucleotides Echvi_0219 and Echvi_0220 are separated by 210 nucleotides
Echvi_0218: Echvi_0218 - luciferase family oxidoreductase, group 1, at 237,244 to 238,281
_0218
Echvi_0219: Echvi_0219 - hypothetical protein, at 238,490 to 238,591
_0219
Echvi_0220: Echvi_0220 - cysteine synthase B, at 238,802 to 239,680
_0220
Position (kb) 238
239 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 237.508 kb on + strand, within Echvi_0218 at 237.508 kb on + strand, within Echvi_0218 at 237.530 kb on + strand, within Echvi_0218 at 237.644 kb on + strand, within Echvi_0218 at 237.698 kb on + strand, within Echvi_0218 at 237.698 kb on + strand, within Echvi_0218 at 237.698 kb on + strand, within Echvi_0218 at 237.794 kb on - strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.805 kb on + strand, within Echvi_0218 at 237.806 kb on - strand, within Echvi_0218 at 237.833 kb on - strand, within Echvi_0218 at 237.863 kb on - strand, within Echvi_0218 at 237.986 kb on - strand, within Echvi_0218 at 238.047 kb on + strand, within Echvi_0218 at 238.058 kb on - strand, within Echvi_0218 at 238.058 kb on - strand, within Echvi_0218 at 238.059 kb on + strand, within Echvi_0218 at 238.059 kb on + strand, within Echvi_0218 at 238.060 kb on - strand, within Echvi_0218 at 238.212 kb on + strand at 238.257 kb on + strand at 238.293 kb on - strand at 238.323 kb on + strand at 238.324 kb on - strand at 238.373 kb on - strand at 238.431 kb on - strand at 238.447 kb on - strand at 238.457 kb on + strand at 238.457 kb on + strand at 238.458 kb on - strand at 238.458 kb on - strand at 238.459 kb on + strand at 238.472 kb on + strand at 238.473 kb on - strand at 238.491 kb on + strand at 238.501 kb on + strand, within Echvi_0219 at 238.502 kb on - strand, within Echvi_0219 at 238.557 kb on + strand, within Echvi_0219 at 238.558 kb on - strand, within Echvi_0219 at 238.579 kb on + strand, within Echvi_0219 at 238.579 kb on + strand, within Echvi_0219 at 238.579 kb on + strand, within Echvi_0219 at 238.580 kb on - strand, within Echvi_0219 at 238.607 kb on + strand at 238.609 kb on + strand at 238.609 kb on + strand at 238.610 kb on - strand at 238.623 kb on - strand at 238.623 kb on - strand at 238.629 kb on - strand at 238.637 kb on + strand at 238.638 kb on - strand at 238.638 kb on - strand at 238.638 kb on - strand at 238.640 kb on + strand at 238.640 kb on + strand at 238.645 kb on + strand at 238.646 kb on - strand at 238.659 kb on - strand at 238.659 kb on - strand at 238.742 kb on + strand at 238.762 kb on + strand at 238.762 kb on + strand at 238.762 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 237,508 + Echvi_0218 0.25 -2.2 237,508 + Echvi_0218 0.25 +0.2 237,530 + Echvi_0218 0.28 +0.4 237,644 + Echvi_0218 0.39 +0.3 237,698 + Echvi_0218 0.44 -0.9 237,698 + Echvi_0218 0.44 -0.6 237,698 + Echvi_0218 0.44 +3.0 237,794 - Echvi_0218 0.53 -2.6 237,805 + Echvi_0218 0.54 +0.5 237,805 + Echvi_0218 0.54 -2.9 237,805 + Echvi_0218 0.54 -2.7 237,805 + Echvi_0218 0.54 -0.3 237,806 - Echvi_0218 0.54 -0.1 237,833 - Echvi_0218 0.57 +0.2 237,863 - Echvi_0218 0.60 +0.7 237,986 - Echvi_0218 0.71 -1.0 238,047 + Echvi_0218 0.77 +0.2 238,058 - Echvi_0218 0.78 -0.2 238,058 - Echvi_0218 0.78 +0.4 238,059 + Echvi_0218 0.79 +1.7 238,059 + Echvi_0218 0.79 +0.7 238,060 - Echvi_0218 0.79 -0.3 238,212 + -0.5 238,257 + +0.3 238,293 - +2.1 238,323 + -0.3 238,324 - +0.5 238,373 - -0.5 238,431 - -1.2 238,447 - +0.4 238,457 + +0.1 238,457 + -0.4 238,458 - -2.0 238,458 - -0.7 238,459 + -0.3 238,472 + +0.4 238,473 - -1.6 238,491 + +0.0 238,501 + Echvi_0219 0.11 +0.6 238,502 - Echvi_0219 0.12 +1.2 238,557 + Echvi_0219 0.66 +0.8 238,558 - Echvi_0219 0.67 -1.8 238,579 + Echvi_0219 0.87 +1.4 238,579 + Echvi_0219 0.87 +0.0 238,579 + Echvi_0219 0.87 -1.9 238,580 - Echvi_0219 0.88 +0.4 238,607 + -1.1 238,609 + +0.1 238,609 + +0.9 238,610 - -0.5 238,623 - +0.5 238,623 - +0.3 238,629 - -2.3 238,637 + +0.3 238,638 - +0.4 238,638 - +0.0 238,638 - -0.3 238,640 + -1.1 238,640 + -0.6 238,645 + -0.3 238,646 - +0.7 238,659 - +1.6 238,659 - -0.9 238,742 + +0.5 238,762 + +3.2 238,762 + -2.4 238,762 + -1.1
Or see this region's nucleotide sequence