Experiment: L-Alanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0203 and Echvi_0204 are separated by 150 nucleotides Echvi_0204 and Echvi_0205 are separated by 9 nucleotides Echvi_0205 and Echvi_0206 are separated by 73 nucleotides
Echvi_0203: Echvi_0203 - Transcriptional regulator, at 221,191 to 222,069
_0203
Echvi_0204: Echvi_0204 - N-acetyl-beta-hexosaminidase, at 222,220 to 224,154
_0204
Echvi_0205: Echvi_0205 - Metal-dependent hydrolase, at 224,164 to 224,958
_0205
Echvi_0206: Echvi_0206 - Transcriptional regulators of sugar metabolism, at 225,032 to 225,793
_0206
Position (kb) 222
223
224
225 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 221.268 kb on + strand at 221.268 kb on + strand at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.354 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.444 kb on + strand, within Echvi_0203 at 221.500 kb on - strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.557 kb on + strand, within Echvi_0203 at 221.558 kb on - strand, within Echvi_0203 at 221.558 kb on - strand, within Echvi_0203 at 221.588 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.693 kb on + strand, within Echvi_0203 at 221.694 kb on - strand, within Echvi_0203 at 221.793 kb on - strand, within Echvi_0203 at 221.797 kb on + strand, within Echvi_0203 at 221.915 kb on + strand, within Echvi_0203 at 222.370 kb on + strand at 222.370 kb on + strand at 222.370 kb on + strand at 222.372 kb on + strand at 222.373 kb on - strand at 222.373 kb on - strand at 222.378 kb on - strand at 222.414 kb on - strand, within Echvi_0204 at 222.414 kb on - strand, within Echvi_0204 at 222.467 kb on + strand, within Echvi_0204 at 222.533 kb on - strand, within Echvi_0204 at 222.533 kb on - strand, within Echvi_0204 at 222.558 kb on + strand, within Echvi_0204 at 222.588 kb on - strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.611 kb on + strand, within Echvi_0204 at 222.630 kb on - strand, within Echvi_0204 at 222.685 kb on + strand, within Echvi_0204 at 222.686 kb on - strand, within Echvi_0204 at 222.687 kb on + strand, within Echvi_0204 at 222.707 kb on + strand, within Echvi_0204 at 222.707 kb on + strand, within Echvi_0204 at 222.708 kb on - strand, within Echvi_0204 at 222.769 kb on - strand, within Echvi_0204 at 222.843 kb on + strand, within Echvi_0204 at 222.851 kb on + strand, within Echvi_0204 at 222.871 kb on - strand, within Echvi_0204 at 222.895 kb on + strand, within Echvi_0204 at 222.934 kb on + strand, within Echvi_0204 at 222.937 kb on + strand, within Echvi_0204 at 222.937 kb on + strand, within Echvi_0204 at 222.938 kb on - strand, within Echvi_0204 at 223.188 kb on - strand, within Echvi_0204 at 223.188 kb on - strand, within Echvi_0204 at 223.188 kb on - strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.199 kb on + strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.200 kb on - strand, within Echvi_0204 at 223.201 kb on + strand, within Echvi_0204 at 223.201 kb on + strand, within Echvi_0204 at 223.201 kb on + strand, within Echvi_0204 at 223.202 kb on - strand, within Echvi_0204 at 223.202 kb on - strand, within Echvi_0204 at 223.379 kb on + strand, within Echvi_0204 at 223.388 kb on - strand, within Echvi_0204 at 223.396 kb on - strand, within Echvi_0204 at 223.398 kb on + strand, within Echvi_0204 at 223.399 kb on - strand, within Echvi_0204 at 223.403 kb on + strand, within Echvi_0204 at 223.570 kb on + strand, within Echvi_0204 at 223.570 kb on + strand, within Echvi_0204 at 223.571 kb on - strand, within Echvi_0204 at 223.571 kb on - strand, within Echvi_0204 at 223.571 kb on - strand, within Echvi_0204 at 223.648 kb on + strand, within Echvi_0204 at 223.710 kb on - strand, within Echvi_0204 at 223.732 kb on + strand, within Echvi_0204 at 223.732 kb on + strand, within Echvi_0204 at 223.732 kb on + strand, within Echvi_0204 at 223.733 kb on - strand, within Echvi_0204 at 223.733 kb on - strand, within Echvi_0204 at 223.759 kb on + strand, within Echvi_0204 at 223.760 kb on - strand, within Echvi_0204 at 223.760 kb on - strand, within Echvi_0204 at 223.980 kb on + strand at 223.986 kb on - strand at 224.032 kb on + strand at 224.087 kb on + strand at 224.088 kb on - strand at 224.088 kb on - strand at 224.092 kb on + strand at 224.092 kb on + strand at 224.093 kb on - strand at 224.093 kb on - strand at 224.094 kb on + strand at 224.095 kb on - strand at 224.144 kb on + strand at 224.148 kb on + strand at 224.152 kb on + strand at 224.153 kb on - strand at 224.153 kb on - strand at 224.175 kb on - strand at 224.182 kb on - strand at 224.186 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.189 kb on + strand at 224.190 kb on - strand at 224.190 kb on - strand at 224.196 kb on - strand at 224.258 kb on - strand, within Echvi_0205 at 224.306 kb on + strand, within Echvi_0205 at 224.306 kb on + strand, within Echvi_0205 at 224.307 kb on - strand, within Echvi_0205 at 224.307 kb on - strand, within Echvi_0205 at 224.377 kb on - strand, within Echvi_0205 at 224.584 kb on + strand, within Echvi_0205 at 224.585 kb on - strand, within Echvi_0205 at 224.585 kb on - strand, within Echvi_0205 at 224.585 kb on - strand, within Echvi_0205 at 224.586 kb on + strand, within Echvi_0205 at 224.587 kb on - strand, within Echvi_0205 at 224.683 kb on + strand, within Echvi_0205 at 224.709 kb on - strand, within Echvi_0205 at 224.727 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.777 kb on + strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.778 kb on - strand, within Echvi_0205 at 224.805 kb on + strand, within Echvi_0205 at 224.806 kb on - strand, within Echvi_0205 at 224.835 kb on + strand, within Echvi_0205 at 224.851 kb on - strand, within Echvi_0205 at 224.943 kb on - strand at 224.996 kb on + strand at 224.996 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.041 kb on + strand at 225.042 kb on - strand at 225.042 kb on - strand at 225.042 kb on - strand at 225.106 kb on + strand at 225.139 kb on + strand, within Echvi_0206 at 225.153 kb on - strand, within Echvi_0206
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (N) remove 221,268 + +0.1 221,268 + -0.9 221,354 + Echvi_0203 0.19 -0.0 221,354 + Echvi_0203 0.19 -2.2 221,354 + Echvi_0203 0.19 +1.1 221,354 + Echvi_0203 0.19 -0.3 221,444 + Echvi_0203 0.29 +0.5 221,444 + Echvi_0203 0.29 +1.1 221,444 + Echvi_0203 0.29 -0.4 221,500 - Echvi_0203 0.35 +0.2 221,557 + Echvi_0203 0.42 -1.5 221,557 + Echvi_0203 0.42 -1.3 221,557 + Echvi_0203 0.42 +0.4 221,557 + Echvi_0203 0.42 +0.1 221,558 - Echvi_0203 0.42 -0.3 221,558 - Echvi_0203 0.42 +0.2 221,588 + Echvi_0203 0.45 -1.2 221,693 + Echvi_0203 0.57 -0.1 221,693 + Echvi_0203 0.57 +0.5 221,693 + Echvi_0203 0.57 +0.3 221,694 - Echvi_0203 0.57 +1.2 221,793 - Echvi_0203 0.68 -0.2 221,797 + Echvi_0203 0.69 +0.9 221,915 + Echvi_0203 0.82 -1.8 222,370 + +0.8 222,370 + +1.0 222,370 + +1.2 222,372 + +1.0 222,373 - -0.7 222,373 - +0.1 222,378 - +0.5 222,414 - Echvi_0204 0.10 +0.8 222,414 - Echvi_0204 0.10 -0.5 222,467 + Echvi_0204 0.13 +0.2 222,533 - Echvi_0204 0.16 +0.3 222,533 - Echvi_0204 0.16 -0.9 222,558 + Echvi_0204 0.17 +1.6 222,588 - Echvi_0204 0.19 -1.2 222,611 + Echvi_0204 0.20 -1.4 222,611 + Echvi_0204 0.20 -2.3 222,611 + Echvi_0204 0.20 +1.4 222,630 - Echvi_0204 0.21 +0.7 222,685 + Echvi_0204 0.24 -0.4 222,686 - Echvi_0204 0.24 -2.6 222,687 + Echvi_0204 0.24 -0.5 222,707 + Echvi_0204 0.25 +1.5 222,707 + Echvi_0204 0.25 -1.5 222,708 - Echvi_0204 0.25 +1.0 222,769 - Echvi_0204 0.28 -0.6 222,843 + Echvi_0204 0.32 +0.3 222,851 + Echvi_0204 0.33 +0.4 222,871 - Echvi_0204 0.34 -0.3 222,895 + Echvi_0204 0.35 +0.8 222,934 + Echvi_0204 0.37 +0.9 222,937 + Echvi_0204 0.37 -1.0 222,937 + Echvi_0204 0.37 -1.2 222,938 - Echvi_0204 0.37 +0.9 223,188 - Echvi_0204 0.50 -0.5 223,188 - Echvi_0204 0.50 -0.4 223,188 - Echvi_0204 0.50 -2.6 223,199 + Echvi_0204 0.51 +0.2 223,199 + Echvi_0204 0.51 -0.4 223,199 + Echvi_0204 0.51 +0.4 223,199 + Echvi_0204 0.51 +0.2 223,199 + Echvi_0204 0.51 +0.5 223,199 + Echvi_0204 0.51 +1.2 223,199 + Echvi_0204 0.51 -0.3 223,199 + Echvi_0204 0.51 -0.8 223,199 + Echvi_0204 0.51 -0.9 223,199 + Echvi_0204 0.51 -1.5 223,199 + Echvi_0204 0.51 +0.3 223,200 - Echvi_0204 0.51 -0.5 223,200 - Echvi_0204 0.51 +0.3 223,200 - Echvi_0204 0.51 -0.1 223,200 - Echvi_0204 0.51 +0.2 223,200 - Echvi_0204 0.51 -0.5 223,200 - Echvi_0204 0.51 -1.6 223,200 - Echvi_0204 0.51 -0.7 223,200 - Echvi_0204 0.51 +0.9 223,201 + Echvi_0204 0.51 +0.7 223,201 + Echvi_0204 0.51 +1.4 223,201 + Echvi_0204 0.51 +0.6 223,202 - Echvi_0204 0.51 +1.0 223,202 - Echvi_0204 0.51 -0.0 223,379 + Echvi_0204 0.60 +0.8 223,388 - Echvi_0204 0.60 +1.0 223,396 - Echvi_0204 0.61 -0.4 223,398 + Echvi_0204 0.61 -0.3 223,399 - Echvi_0204 0.61 -0.2 223,403 + Echvi_0204 0.61 -1.2 223,570 + Echvi_0204 0.70 -0.0 223,570 + Echvi_0204 0.70 -0.3 223,571 - Echvi_0204 0.70 -0.2 223,571 - Echvi_0204 0.70 +0.9 223,571 - Echvi_0204 0.70 +1.4 223,648 + Echvi_0204 0.74 +0.5 223,710 - Echvi_0204 0.77 +1.7 223,732 + Echvi_0204 0.78 +0.8 223,732 + Echvi_0204 0.78 +0.9 223,732 + Echvi_0204 0.78 +0.2 223,733 - Echvi_0204 0.78 +0.3 223,733 - Echvi_0204 0.78 +0.7 223,759 + Echvi_0204 0.80 +0.0 223,760 - Echvi_0204 0.80 -0.3 223,760 - Echvi_0204 0.80 -0.2 223,980 + +0.7 223,986 - +0.6 224,032 + +1.6 224,087 + +0.1 224,088 - -1.1 224,088 - -1.2 224,092 + +1.5 224,092 + +1.6 224,093 - +0.2 224,093 - -0.5 224,094 + +0.8 224,095 - -1.2 224,144 + -0.0 224,148 + -0.1 224,152 + -1.6 224,153 - +0.5 224,153 - +0.3 224,175 - +1.4 224,182 - +0.1 224,186 + -2.7 224,189 + -0.2 224,189 + -0.9 224,189 + +0.3 224,189 + -0.9 224,190 - -0.3 224,190 - +0.1 224,196 - -2.2 224,258 - Echvi_0205 0.12 -1.2 224,306 + Echvi_0205 0.18 +1.4 224,306 + Echvi_0205 0.18 +0.1 224,307 - Echvi_0205 0.18 -1.5 224,307 - Echvi_0205 0.18 -0.9 224,377 - Echvi_0205 0.27 -0.8 224,584 + Echvi_0205 0.53 -1.3 224,585 - Echvi_0205 0.53 +0.2 224,585 - Echvi_0205 0.53 -1.2 224,585 - Echvi_0205 0.53 -1.3 224,586 + Echvi_0205 0.53 -0.9 224,587 - Echvi_0205 0.53 +1.1 224,683 + Echvi_0205 0.65 -1.0 224,709 - Echvi_0205 0.69 -0.2 224,727 + Echvi_0205 0.71 +0.5 224,777 + Echvi_0205 0.77 -0.1 224,777 + Echvi_0205 0.77 -1.2 224,777 + Echvi_0205 0.77 -1.7 224,777 + Echvi_0205 0.77 -2.2 224,777 + Echvi_0205 0.77 +1.3 224,777 + Echvi_0205 0.77 +0.1 224,778 - Echvi_0205 0.77 -0.5 224,778 - Echvi_0205 0.77 -0.6 224,778 - Echvi_0205 0.77 +1.3 224,778 - Echvi_0205 0.77 -1.6 224,805 + Echvi_0205 0.81 -0.1 224,806 - Echvi_0205 0.81 -0.1 224,835 + Echvi_0205 0.84 -0.7 224,851 - Echvi_0205 0.86 +0.7 224,943 - +0.5 224,996 + -0.2 224,996 + -0.3 225,041 + -0.6 225,041 + -2.3 225,041 + +1.3 225,041 + +0.3 225,041 + -1.0 225,042 - -0.9 225,042 - -2.2 225,042 - -3.3 225,106 + +0.2 225,139 + Echvi_0206 0.14 -2.5 225,153 - Echvi_0206 0.16 -1.2
Or see this region's nucleotide sequence