Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0043

Experiment: L-Alanine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0042 and Echvi_0043 are separated by 129 nucleotidesEchvi_0043 and Echvi_0044 are separated by 312 nucleotides Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874 _0042 Echvi_0043: Echvi_0043 - ABC-type antimicrobial peptide transport system, permease component, at 40,004 to 41,251 _0043 Echvi_0044: Echvi_0044 - protein RecA, at 41,564 to 42,592 _0044 Position (kb) 40 41 42Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 39.879 kb on - strandat 40.048 kb on - strandat 40.133 kb on - strand, within Echvi_0043at 40.141 kb on - strand, within Echvi_0043at 40.254 kb on - strand, within Echvi_0043at 40.254 kb on - strand, within Echvi_0043at 40.277 kb on + strand, within Echvi_0043at 40.277 kb on + strand, within Echvi_0043at 40.278 kb on - strand, within Echvi_0043at 40.278 kb on - strand, within Echvi_0043at 40.327 kb on + strand, within Echvi_0043at 40.328 kb on - strand, within Echvi_0043at 40.405 kb on - strand, within Echvi_0043at 40.405 kb on - strand, within Echvi_0043at 40.414 kb on + strand, within Echvi_0043at 40.424 kb on + strand, within Echvi_0043at 40.425 kb on - strand, within Echvi_0043at 40.425 kb on - strand, within Echvi_0043at 40.425 kb on - strand, within Echvi_0043at 40.428 kb on - strand, within Echvi_0043at 40.676 kb on + strand, within Echvi_0043at 40.677 kb on - strand, within Echvi_0043at 40.679 kb on + strand, within Echvi_0043at 40.680 kb on - strand, within Echvi_0043at 40.697 kb on - strand, within Echvi_0043at 40.697 kb on - strand, within Echvi_0043at 40.709 kb on - strand, within Echvi_0043at 40.918 kb on - strand, within Echvi_0043at 40.940 kb on - strand, within Echvi_0043at 40.984 kb on - strand, within Echvi_0043at 41.124 kb on + strand, within Echvi_0043at 41.125 kb on - strand, within Echvi_0043at 41.158 kb on - strandat 41.175 kb on + strandat 41.175 kb on + strandat 41.264 kb on + strandat 41.264 kb on + strandat 41.306 kb on + strandat 41.306 kb on + strandat 41.307 kb on - strandat 41.307 kb on - strandat 41.307 kb on - strandat 41.316 kb on + strandat 41.317 kb on - strandat 41.324 kb on - strandat 41.330 kb on + strandat 41.330 kb on + strandat 41.330 kb on + strandat 41.404 kb on + strandat 41.404 kb on + strandat 41.405 kb on - strandat 41.405 kb on - strandat 41.405 kb on - strandat 41.405 kb on - strandat 41.428 kb on - strandat 41.522 kb on - strandat 41.522 kb on - strandat 41.522 kb on - strandat 41.541 kb on + strandat 41.553 kb on + strandat 41.553 kb on + strandat 41.559 kb on - strandat 41.559 kb on - strandat 41.642 kb on + strandat 41.796 kb on + strand, within Echvi_0044at 41.797 kb on - strand, within Echvi_0044at 41.800 kb on + strand, within Echvi_0044at 41.801 kb on - strand, within Echvi_0044at 41.926 kb on + strand, within Echvi_0044at 41.937 kb on + strand, within Echvi_0044

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (N)
remove
39,879 - +0.2
40,048 - +0.2
40,133 - Echvi_0043 0.10 -0.5
40,141 - Echvi_0043 0.11 +1.4
40,254 - Echvi_0043 0.20 +1.4
40,254 - Echvi_0043 0.20 -1.3
40,277 + Echvi_0043 0.22 -0.3
40,277 + Echvi_0043 0.22 -0.3
40,278 - Echvi_0043 0.22 -2.4
40,278 - Echvi_0043 0.22 +0.2
40,327 + Echvi_0043 0.26 -0.0
40,328 - Echvi_0043 0.26 +0.7
40,405 - Echvi_0043 0.32 +0.4
40,405 - Echvi_0043 0.32 +1.7
40,414 + Echvi_0043 0.33 +0.4
40,424 + Echvi_0043 0.34 -1.3
40,425 - Echvi_0043 0.34 -0.4
40,425 - Echvi_0043 0.34 +0.8
40,425 - Echvi_0043 0.34 +0.6
40,428 - Echvi_0043 0.34 +0.6
40,676 + Echvi_0043 0.54 -0.9
40,677 - Echvi_0043 0.54 +0.8
40,679 + Echvi_0043 0.54 +0.9
40,680 - Echvi_0043 0.54 -0.3
40,697 - Echvi_0043 0.56 -1.2
40,697 - Echvi_0043 0.56 -1.2
40,709 - Echvi_0043 0.56 +1.6
40,918 - Echvi_0043 0.73 +0.2
40,940 - Echvi_0043 0.75 +0.1
40,984 - Echvi_0043 0.79 -0.8
41,124 + Echvi_0043 0.90 +0.7
41,125 - Echvi_0043 0.90 -2.2
41,158 - +2.3
41,175 + -0.6
41,175 + -1.2
41,264 + -0.6
41,264 + +0.2
41,306 + +0.5
41,306 + +1.6
41,307 - +1.1
41,307 - +0.7
41,307 - +1.6
41,316 + +0.4
41,317 - -0.6
41,324 - +0.9
41,330 + -0.2
41,330 + -0.8
41,330 + -1.0
41,404 + +0.3
41,404 + -1.4
41,405 - +0.4
41,405 - -0.0
41,405 - +0.5
41,405 - +0.3
41,428 - +0.7
41,522 - -0.5
41,522 - +0.5
41,522 - -3.2
41,541 + +0.5
41,553 + -0.4
41,553 + +0.8
41,559 - +1.2
41,559 - -0.0
41,642 + -0.5
41,796 + Echvi_0044 0.23 -0.3
41,797 - Echvi_0044 0.23 -0.5
41,800 + Echvi_0044 0.23 +1.3
41,801 - Echvi_0044 0.23 -1.6
41,926 + Echvi_0044 0.35 +0.7
41,937 + Echvi_0044 0.36 +0.3

Or see this region's nucleotide sequence