Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2152

Experiment: m.b. Rifampicin 0.0004 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntB158DRAFT_2150 and B158DRAFT_2152 are separated by 416 nucleotidesB158DRAFT_2152 and B158DRAFT_2153 are separated by 212 nucleotidesB158DRAFT_2153 and B158DRAFT_2154 overlap by 1 nucleotides B158DRAFT_2150: B158DRAFT_2150 - Glucose/sorbosone dehydrogenases, at 288,586 to 289,671 _2150 B158DRAFT_2152: B158DRAFT_2152 - Predicted metalloendopeptidase, at 290,088 to 292,181 _2152 B158DRAFT_2153: B158DRAFT_2153 - Predicted thioesterase, at 292,394 to 292,846 _2153 B158DRAFT_2154: B158DRAFT_2154 - tRNA s(2)C-32 sulfurtransferase (EC 2.8.1.4), at 292,846 to 293,769 _2154 Position (kb) 290 291 292 293Strain fitness (log2 ratio) -1 0 1at 289.142 kb on - strand, within B158DRAFT_2150at 289.142 kb on - strand, within B158DRAFT_2150at 289.156 kb on - strand, within B158DRAFT_2150at 289.218 kb on + strand, within B158DRAFT_2150at 289.218 kb on + strand, within B158DRAFT_2150at 289.286 kb on + strand, within B158DRAFT_2150at 289.292 kb on - strand, within B158DRAFT_2150at 289.336 kb on - strand, within B158DRAFT_2150at 289.336 kb on - strand, within B158DRAFT_2150at 289.338 kb on + strand, within B158DRAFT_2150at 289.399 kb on + strand, within B158DRAFT_2150at 289.442 kb on + strand, within B158DRAFT_2150at 289.515 kb on + strand, within B158DRAFT_2150at 289.525 kb on + strand, within B158DRAFT_2150at 289.533 kb on - strand, within B158DRAFT_2150at 289.564 kb on + strandat 289.564 kb on + strandat 289.572 kb on - strandat 289.572 kb on - strandat 289.572 kb on - strandat 289.572 kb on - strandat 289.638 kb on + strandat 289.646 kb on - strandat 289.646 kb on - strandat 289.646 kb on - strandat 289.646 kb on - strandat 289.646 kb on - strandat 289.651 kb on - strandat 290.196 kb on + strandat 290.209 kb on - strandat 290.305 kb on + strand, within B158DRAFT_2152at 290.377 kb on - strand, within B158DRAFT_2152at 290.416 kb on + strand, within B158DRAFT_2152at 290.431 kb on + strand, within B158DRAFT_2152at 290.441 kb on - strand, within B158DRAFT_2152at 290.605 kb on + strand, within B158DRAFT_2152at 290.689 kb on + strand, within B158DRAFT_2152at 290.689 kb on + strand, within B158DRAFT_2152at 290.689 kb on + strand, within B158DRAFT_2152at 290.719 kb on + strand, within B158DRAFT_2152at 290.719 kb on + strand, within B158DRAFT_2152at 290.727 kb on - strand, within B158DRAFT_2152at 290.727 kb on - strand, within B158DRAFT_2152at 290.802 kb on - strand, within B158DRAFT_2152at 290.839 kb on + strand, within B158DRAFT_2152at 290.847 kb on - strand, within B158DRAFT_2152at 290.934 kb on - strand, within B158DRAFT_2152at 290.939 kb on + strand, within B158DRAFT_2152at 290.960 kb on - strand, within B158DRAFT_2152at 290.960 kb on - strand, within B158DRAFT_2152at 291.038 kb on - strand, within B158DRAFT_2152at 291.101 kb on + strand, within B158DRAFT_2152at 291.237 kb on - strand, within B158DRAFT_2152at 291.269 kb on + strand, within B158DRAFT_2152at 291.331 kb on + strand, within B158DRAFT_2152at 291.339 kb on - strand, within B158DRAFT_2152at 291.578 kb on + strand, within B158DRAFT_2152at 291.586 kb on - strand, within B158DRAFT_2152at 291.586 kb on - strand, within B158DRAFT_2152at 291.634 kb on + strand, within B158DRAFT_2152at 291.641 kb on + strand, within B158DRAFT_2152at 291.641 kb on + strand, within B158DRAFT_2152at 291.656 kb on + strand, within B158DRAFT_2152at 291.666 kb on + strand, within B158DRAFT_2152at 291.698 kb on + strand, within B158DRAFT_2152at 291.698 kb on + strand, within B158DRAFT_2152at 291.754 kb on + strand, within B158DRAFT_2152at 291.754 kb on + strand, within B158DRAFT_2152at 291.762 kb on - strand, within B158DRAFT_2152at 291.826 kb on - strand, within B158DRAFT_2152at 291.882 kb on + strand, within B158DRAFT_2152at 291.882 kb on + strand, within B158DRAFT_2152at 291.882 kb on + strand, within B158DRAFT_2152at 291.887 kb on + strand, within B158DRAFT_2152at 291.887 kb on + strand, within B158DRAFT_2152at 291.983 kb on + strandat 292.240 kb on + strandat 292.273 kb on + strandat 292.281 kb on - strandat 292.302 kb on + strandat 292.310 kb on - strandat 292.363 kb on - strandat 292.367 kb on + strandat 292.367 kb on - strandat 292.372 kb on + strandat 292.375 kb on - strandat 292.380 kb on - strandat 292.380 kb on - strandat 292.380 kb on - strandat 292.392 kb on + strandat 292.392 kb on + strandat 292.474 kb on - strand, within B158DRAFT_2153at 292.510 kb on - strand, within B158DRAFT_2153at 292.522 kb on - strand, within B158DRAFT_2153at 292.522 kb on - strand, within B158DRAFT_2153at 292.596 kb on - strand, within B158DRAFT_2153at 292.626 kb on + strand, within B158DRAFT_2153at 292.626 kb on + strand, within B158DRAFT_2153at 292.645 kb on + strand, within B158DRAFT_2153at 292.645 kb on + strand, within B158DRAFT_2153at 292.645 kb on + strand, within B158DRAFT_2153at 292.651 kb on + strand, within B158DRAFT_2153at 292.653 kb on - strand, within B158DRAFT_2153at 292.653 kb on - strand, within B158DRAFT_2153at 292.653 kb on - strand, within B158DRAFT_2153at 292.659 kb on - strand, within B158DRAFT_2153at 292.692 kb on - strand, within B158DRAFT_2153at 292.778 kb on + strand, within B158DRAFT_2153at 292.795 kb on - strand, within B158DRAFT_2153at 292.844 kb on + strandat 292.934 kb on + strandat 292.947 kb on - strand, within B158DRAFT_2154at 292.959 kb on + strand, within B158DRAFT_2154at 292.959 kb on + strand, within B158DRAFT_2154at 292.967 kb on - strand, within B158DRAFT_2154at 293.025 kb on - strand, within B158DRAFT_2154at 293.063 kb on + strand, within B158DRAFT_2154at 293.063 kb on + strand, within B158DRAFT_2154at 293.181 kb on - strand, within B158DRAFT_2154

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
remove
289,142 - B158DRAFT_2150 0.51 +0.0
289,142 - B158DRAFT_2150 0.51 -1.4
289,156 - B158DRAFT_2150 0.52 -0.2
289,218 + B158DRAFT_2150 0.58 +0.1
289,218 + B158DRAFT_2150 0.58 -0.6
289,286 + B158DRAFT_2150 0.64 -0.0
289,292 - B158DRAFT_2150 0.65 -0.3
289,336 - B158DRAFT_2150 0.69 -0.2
289,336 - B158DRAFT_2150 0.69 -0.4
289,338 + B158DRAFT_2150 0.69 -0.6
289,399 + B158DRAFT_2150 0.75 -1.3
289,442 + B158DRAFT_2150 0.79 -0.2
289,515 + B158DRAFT_2150 0.86 -0.8
289,525 + B158DRAFT_2150 0.86 -0.3
289,533 - B158DRAFT_2150 0.87 +0.2
289,564 + -0.1
289,564 + -0.2
289,572 - +0.6
289,572 - -0.3
289,572 - +0.3
289,572 - -0.4
289,638 + -0.9
289,646 - -0.1
289,646 - -0.3
289,646 - +0.6
289,646 - -0.4
289,646 - +0.0
289,651 - -1.1
290,196 + +0.4
290,209 - +0.1
290,305 + B158DRAFT_2152 0.10 +0.9
290,377 - B158DRAFT_2152 0.14 -0.4
290,416 + B158DRAFT_2152 0.16 -1.0
290,431 + B158DRAFT_2152 0.16 +0.1
290,441 - B158DRAFT_2152 0.17 -0.1
290,605 + B158DRAFT_2152 0.25 +0.2
290,689 + B158DRAFT_2152 0.29 +0.1
290,689 + B158DRAFT_2152 0.29 -0.4
290,689 + B158DRAFT_2152 0.29 -0.0
290,719 + B158DRAFT_2152 0.30 -0.4
290,719 + B158DRAFT_2152 0.30 -0.4
290,727 - B158DRAFT_2152 0.31 -0.1
290,727 - B158DRAFT_2152 0.31 +0.3
290,802 - B158DRAFT_2152 0.34 -0.1
290,839 + B158DRAFT_2152 0.36 -0.8
290,847 - B158DRAFT_2152 0.36 -0.3
290,934 - B158DRAFT_2152 0.40 -0.2
290,939 + B158DRAFT_2152 0.41 -0.2
290,960 - B158DRAFT_2152 0.42 -1.1
290,960 - B158DRAFT_2152 0.42 +0.2
291,038 - B158DRAFT_2152 0.45 +0.0
291,101 + B158DRAFT_2152 0.48 +0.2
291,237 - B158DRAFT_2152 0.55 -0.7
291,269 + B158DRAFT_2152 0.56 -0.0
291,331 + B158DRAFT_2152 0.59 +0.3
291,339 - B158DRAFT_2152 0.60 -0.0
291,578 + B158DRAFT_2152 0.71 -0.1
291,586 - B158DRAFT_2152 0.72 +0.2
291,586 - B158DRAFT_2152 0.72 -0.4
291,634 + B158DRAFT_2152 0.74 +0.3
291,641 + B158DRAFT_2152 0.74 +0.7
291,641 + B158DRAFT_2152 0.74 +1.0
291,656 + B158DRAFT_2152 0.75 +0.0
291,666 + B158DRAFT_2152 0.75 -0.1
291,698 + B158DRAFT_2152 0.77 -0.4
291,698 + B158DRAFT_2152 0.77 -0.2
291,754 + B158DRAFT_2152 0.80 -0.2
291,754 + B158DRAFT_2152 0.80 -0.3
291,762 - B158DRAFT_2152 0.80 +0.2
291,826 - B158DRAFT_2152 0.83 -0.4
291,882 + B158DRAFT_2152 0.86 -0.1
291,882 + B158DRAFT_2152 0.86 -0.4
291,882 + B158DRAFT_2152 0.86 -0.3
291,887 + B158DRAFT_2152 0.86 -0.9
291,887 + B158DRAFT_2152 0.86 -0.2
291,983 + +0.1
292,240 + -0.0
292,273 + +0.0
292,281 - -0.2
292,302 + +1.0
292,310 - +0.1
292,363 - -0.3
292,367 + -0.5
292,367 - -0.2
292,372 + -0.1
292,375 - +0.2
292,380 - -0.1
292,380 - +0.1
292,380 - -0.3
292,392 + -0.9
292,392 + -0.1
292,474 - B158DRAFT_2153 0.18 +0.1
292,510 - B158DRAFT_2153 0.26 +0.3
292,522 - B158DRAFT_2153 0.28 -0.2
292,522 - B158DRAFT_2153 0.28 -0.2
292,596 - B158DRAFT_2153 0.45 +0.6
292,626 + B158DRAFT_2153 0.51 -0.4
292,626 + B158DRAFT_2153 0.51 -0.4
292,645 + B158DRAFT_2153 0.55 +0.2
292,645 + B158DRAFT_2153 0.55 -0.5
292,645 + B158DRAFT_2153 0.55 -0.2
292,651 + B158DRAFT_2153 0.57 -0.2
292,653 - B158DRAFT_2153 0.57 -0.4
292,653 - B158DRAFT_2153 0.57 -0.6
292,653 - B158DRAFT_2153 0.57 -0.1
292,659 - B158DRAFT_2153 0.58 -0.2
292,692 - B158DRAFT_2153 0.66 -0.2
292,778 + B158DRAFT_2153 0.85 -0.4
292,795 - B158DRAFT_2153 0.89 -1.0
292,844 + -0.1
292,934 + +1.3
292,947 - B158DRAFT_2154 0.11 -0.0
292,959 + B158DRAFT_2154 0.12 -1.4
292,959 + B158DRAFT_2154 0.12 +0.4
292,967 - B158DRAFT_2154 0.13 +0.4
293,025 - B158DRAFT_2154 0.19 +0.8
293,063 + B158DRAFT_2154 0.23 +1.6
293,063 + B158DRAFT_2154 0.23 +0.1
293,181 - B158DRAFT_2154 0.36 +0.9

Or see this region's nucleotide sequence