Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2145

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2144 and B158DRAFT_2145 are separated by 14 nucleotidesB158DRAFT_2145 and B158DRAFT_2146 are separated by 137 nucleotides B158DRAFT_2144: B158DRAFT_2144 - pyruvate dehydrogenase E1 component, homodimeric type, at 278,500 to 281,181 _2144 B158DRAFT_2145: B158DRAFT_2145 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 281,196 to 282,854 _2145 B158DRAFT_2146: B158DRAFT_2146 - dihydrolipoamide dehydrogenase, at 282,992 to 284,410 _2146 Position (kb) 281 282 283Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 280.198 kb on + strand, within B158DRAFT_2144at 280.245 kb on - strand, within B158DRAFT_2144at 280.347 kb on - strand, within B158DRAFT_2144at 280.354 kb on + strand, within B158DRAFT_2144at 280.441 kb on + strand, within B158DRAFT_2144at 280.476 kb on - strand, within B158DRAFT_2144at 280.489 kb on + strand, within B158DRAFT_2144at 280.497 kb on - strand, within B158DRAFT_2144at 280.539 kb on - strand, within B158DRAFT_2144at 280.576 kb on + strand, within B158DRAFT_2144at 280.613 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on - strand, within B158DRAFT_2144at 280.701 kb on + strand, within B158DRAFT_2144at 280.872 kb on + strand, within B158DRAFT_2144at 280.872 kb on + strand, within B158DRAFT_2144at 280.880 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.938 kb on + strandat 280.938 kb on + strandat 280.946 kb on - strandat 280.946 kb on - strandat 280.946 kb on - strandat 280.974 kb on + strandat 280.974 kb on + strandat 280.982 kb on - strandat 280.994 kb on - strandat 281.072 kb on - strandat 281.129 kb on - strandat 281.163 kb on - strandat 281.166 kb on + strandat 281.183 kb on - strandat 281.282 kb on - strandat 281.308 kb on - strandat 281.340 kb on - strandat 281.377 kb on + strand, within B158DRAFT_2145at 281.379 kb on - strand, within B158DRAFT_2145at 281.386 kb on - strand, within B158DRAFT_2145at 281.386 kb on - strand, within B158DRAFT_2145at 281.459 kb on - strand, within B158DRAFT_2145at 281.459 kb on - strand, within B158DRAFT_2145at 281.466 kb on - strand, within B158DRAFT_2145at 281.501 kb on + strand, within B158DRAFT_2145at 281.501 kb on + strand, within B158DRAFT_2145at 281.509 kb on - strand, within B158DRAFT_2145at 281.509 kb on - strand, within B158DRAFT_2145at 281.629 kb on + strand, within B158DRAFT_2145at 281.637 kb on - strand, within B158DRAFT_2145at 281.649 kb on - strand, within B158DRAFT_2145at 281.659 kb on - strand, within B158DRAFT_2145at 281.725 kb on - strand, within B158DRAFT_2145at 281.750 kb on - strand, within B158DRAFT_2145at 281.752 kb on + strand, within B158DRAFT_2145at 281.752 kb on + strand, within B158DRAFT_2145at 281.796 kb on - strand, within B158DRAFT_2145at 281.904 kb on - strand, within B158DRAFT_2145at 281.905 kb on - strand, within B158DRAFT_2145at 281.965 kb on + strand, within B158DRAFT_2145at 282.030 kb on - strand, within B158DRAFT_2145at 282.057 kb on + strand, within B158DRAFT_2145at 282.065 kb on - strand, within B158DRAFT_2145at 282.083 kb on + strand, within B158DRAFT_2145at 282.320 kb on + strand, within B158DRAFT_2145at 282.320 kb on + strand, within B158DRAFT_2145at 282.389 kb on + strand, within B158DRAFT_2145at 282.396 kb on - strand, within B158DRAFT_2145at 282.483 kb on - strand, within B158DRAFT_2145at 282.516 kb on + strand, within B158DRAFT_2145at 282.588 kb on + strand, within B158DRAFT_2145at 282.609 kb on - strand, within B158DRAFT_2145at 282.626 kb on - strand, within B158DRAFT_2145at 282.640 kb on + strand, within B158DRAFT_2145at 282.640 kb on + strand, within B158DRAFT_2145at 282.648 kb on - strand, within B158DRAFT_2145at 282.661 kb on + strand, within B158DRAFT_2145at 282.698 kb on + strandat 282.735 kb on + strandat 282.752 kb on + strandat 282.760 kb on - strandat 282.841 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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280,198 + B158DRAFT_2144 0.63 +5.0
280,245 - B158DRAFT_2144 0.65 +3.8
280,347 - B158DRAFT_2144 0.69 +3.0
280,354 + B158DRAFT_2144 0.69 +3.3
280,441 + B158DRAFT_2144 0.72 +3.5
280,476 - B158DRAFT_2144 0.74 +3.2
280,489 + B158DRAFT_2144 0.74 +2.6
280,497 - B158DRAFT_2144 0.74 +3.2
280,539 - B158DRAFT_2144 0.76 +3.2
280,576 + B158DRAFT_2144 0.77 +3.6
280,613 + B158DRAFT_2144 0.79 +3.2
280,622 + B158DRAFT_2144 0.79 +2.9
280,622 + B158DRAFT_2144 0.79 +3.4
280,622 + B158DRAFT_2144 0.79 +3.2
280,622 - B158DRAFT_2144 0.79 +3.5
280,701 + B158DRAFT_2144 0.82 +3.7
280,872 + B158DRAFT_2144 0.88 +3.5
280,872 + B158DRAFT_2144 0.88 +3.2
280,880 - B158DRAFT_2144 0.89 +3.4
280,895 - B158DRAFT_2144 0.89 +3.2
280,895 - B158DRAFT_2144 0.89 +3.4
280,895 - B158DRAFT_2144 0.89 +3.1
280,938 + +3.8
280,938 + +3.3
280,946 - +3.1
280,946 - +3.3
280,946 - +2.8
280,974 + +3.3
280,974 + +3.2
280,982 - +3.4
280,994 - +3.1
281,072 - +4.4
281,129 - +2.7
281,163 - +3.6
281,166 + +3.5
281,183 - +3.1
281,282 - +2.6
281,308 - +2.9
281,340 - +2.4
281,377 + B158DRAFT_2145 0.11 +3.4
281,379 - B158DRAFT_2145 0.11 +3.2
281,386 - B158DRAFT_2145 0.11 +3.8
281,386 - B158DRAFT_2145 0.11 +3.2
281,459 - B158DRAFT_2145 0.16 +3.7
281,459 - B158DRAFT_2145 0.16 +3.8
281,466 - B158DRAFT_2145 0.16 +3.1
281,501 + B158DRAFT_2145 0.18 +3.1
281,501 + B158DRAFT_2145 0.18 +2.9
281,509 - B158DRAFT_2145 0.19 +3.7
281,509 - B158DRAFT_2145 0.19 +3.4
281,629 + B158DRAFT_2145 0.26 +3.8
281,637 - B158DRAFT_2145 0.27 +3.3
281,649 - B158DRAFT_2145 0.27 +2.8
281,659 - B158DRAFT_2145 0.28 +3.3
281,725 - B158DRAFT_2145 0.32 +3.2
281,750 - B158DRAFT_2145 0.33 +2.5
281,752 + B158DRAFT_2145 0.34 +3.6
281,752 + B158DRAFT_2145 0.34 +3.6
281,796 - B158DRAFT_2145 0.36 +3.6
281,904 - B158DRAFT_2145 0.43 +3.9
281,905 - B158DRAFT_2145 0.43 +3.1
281,965 + B158DRAFT_2145 0.46 +2.9
282,030 - B158DRAFT_2145 0.50 +2.9
282,057 + B158DRAFT_2145 0.52 +3.6
282,065 - B158DRAFT_2145 0.52 +3.6
282,083 + B158DRAFT_2145 0.53 +2.9
282,320 + B158DRAFT_2145 0.68 +2.9
282,320 + B158DRAFT_2145 0.68 +3.0
282,389 + B158DRAFT_2145 0.72 +2.9
282,396 - B158DRAFT_2145 0.72 +3.9
282,483 - B158DRAFT_2145 0.78 +3.6
282,516 + B158DRAFT_2145 0.80 +3.2
282,588 + B158DRAFT_2145 0.84 +3.1
282,609 - B158DRAFT_2145 0.85 +3.4
282,626 - B158DRAFT_2145 0.86 +3.3
282,640 + B158DRAFT_2145 0.87 +3.5
282,640 + B158DRAFT_2145 0.87 +3.9
282,648 - B158DRAFT_2145 0.88 +3.3
282,661 + B158DRAFT_2145 0.88 +3.6
282,698 + +3.8
282,735 + +3.1
282,752 + +2.8
282,760 - +3.2
282,841 - +2.1

Or see this region's nucleotide sequence