Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2144

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2143 and B158DRAFT_2144 are separated by 231 nucleotidesB158DRAFT_2144 and B158DRAFT_2145 are separated by 14 nucleotides B158DRAFT_2143: B158DRAFT_2143 - Membrane protein required for beta-lactamase induction, at 277,399 to 278,268 _2143 B158DRAFT_2144: B158DRAFT_2144 - pyruvate dehydrogenase E1 component, homodimeric type, at 278,500 to 281,181 _2144 B158DRAFT_2145: B158DRAFT_2145 - pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form, at 281,196 to 282,854 _2145 Position (kb) 278 279 280 281 282Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 277.521 kb on - strand, within B158DRAFT_2143at 277.539 kb on + strand, within B158DRAFT_2143at 277.547 kb on - strand, within B158DRAFT_2143at 277.547 kb on - strand, within B158DRAFT_2143at 277.569 kb on - strand, within B158DRAFT_2143at 277.578 kb on + strand, within B158DRAFT_2143at 277.649 kb on + strand, within B158DRAFT_2143at 277.662 kb on - strand, within B158DRAFT_2143at 277.688 kb on + strand, within B158DRAFT_2143at 277.742 kb on + strand, within B158DRAFT_2143at 277.754 kb on + strand, within B158DRAFT_2143at 277.756 kb on + strand, within B158DRAFT_2143at 277.804 kb on + strand, within B158DRAFT_2143at 277.890 kb on - strand, within B158DRAFT_2143at 277.895 kb on - strand, within B158DRAFT_2143at 277.906 kb on + strand, within B158DRAFT_2143at 277.906 kb on + strand, within B158DRAFT_2143at 277.906 kb on + strand, within B158DRAFT_2143at 277.906 kb on + strand, within B158DRAFT_2143at 277.914 kb on - strand, within B158DRAFT_2143at 277.914 kb on - strand, within B158DRAFT_2143at 277.914 kb on - strand, within B158DRAFT_2143at 277.914 kb on - strand, within B158DRAFT_2143at 277.944 kb on + strand, within B158DRAFT_2143at 277.953 kb on + strand, within B158DRAFT_2143at 277.961 kb on - strand, within B158DRAFT_2143at 277.966 kb on + strand, within B158DRAFT_2143at 277.966 kb on + strand, within B158DRAFT_2143at 277.974 kb on - strand, within B158DRAFT_2143at 277.978 kb on + strand, within B158DRAFT_2143at 277.983 kb on + strand, within B158DRAFT_2143at 277.983 kb on + strand, within B158DRAFT_2143at 277.983 kb on + strand, within B158DRAFT_2143at 277.984 kb on - strand, within B158DRAFT_2143at 277.996 kb on - strand, within B158DRAFT_2143at 277.996 kb on - strand, within B158DRAFT_2143at 277.996 kb on - strand, within B158DRAFT_2143at 277.996 kb on - strand, within B158DRAFT_2143at 278.016 kb on - strand, within B158DRAFT_2143at 278.087 kb on + strand, within B158DRAFT_2143at 278.134 kb on + strand, within B158DRAFT_2143at 278.134 kb on + strand, within B158DRAFT_2143at 278.134 kb on + strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.142 kb on - strand, within B158DRAFT_2143at 278.186 kb on + strandat 278.186 kb on + strandat 278.194 kb on - strandat 278.226 kb on - strandat 278.280 kb on - strandat 278.298 kb on + strandat 278.306 kb on - strandat 278.447 kb on - strandat 278.481 kb on - strandat 278.545 kb on - strandat 278.574 kb on + strandat 278.574 kb on + strandat 278.664 kb on - strandat 278.664 kb on - strandat 278.665 kb on - strandat 278.905 kb on + strand, within B158DRAFT_2144at 278.953 kb on + strand, within B158DRAFT_2144at 279.104 kb on + strand, within B158DRAFT_2144at 279.116 kb on + strand, within B158DRAFT_2144at 279.183 kb on + strand, within B158DRAFT_2144at 279.184 kb on + strand, within B158DRAFT_2144at 279.184 kb on + strand, within B158DRAFT_2144at 279.191 kb on - strand, within B158DRAFT_2144at 279.192 kb on - strand, within B158DRAFT_2144at 279.192 kb on - strand, within B158DRAFT_2144at 279.192 kb on - strand, within B158DRAFT_2144at 279.288 kb on + strand, within B158DRAFT_2144at 279.370 kb on + strand, within B158DRAFT_2144at 279.378 kb on - strand, within B158DRAFT_2144at 279.378 kb on - strand, within B158DRAFT_2144at 279.378 kb on - strand, within B158DRAFT_2144at 279.378 kb on - strand, within B158DRAFT_2144at 279.459 kb on - strand, within B158DRAFT_2144at 279.535 kb on + strand, within B158DRAFT_2144at 279.537 kb on + strand, within B158DRAFT_2144at 279.537 kb on + strand, within B158DRAFT_2144at 279.537 kb on + strand, within B158DRAFT_2144at 279.545 kb on - strand, within B158DRAFT_2144at 279.618 kb on + strand, within B158DRAFT_2144at 279.618 kb on + strand, within B158DRAFT_2144at 279.618 kb on + strand, within B158DRAFT_2144at 279.626 kb on - strand, within B158DRAFT_2144at 279.626 kb on - strand, within B158DRAFT_2144at 279.626 kb on - strand, within B158DRAFT_2144at 279.626 kb on - strand, within B158DRAFT_2144at 279.628 kb on + strand, within B158DRAFT_2144at 279.628 kb on + strand, within B158DRAFT_2144at 279.628 kb on + strand, within B158DRAFT_2144at 279.636 kb on - strand, within B158DRAFT_2144at 279.636 kb on - strand, within B158DRAFT_2144at 279.636 kb on - strand, within B158DRAFT_2144at 279.657 kb on - strand, within B158DRAFT_2144at 279.665 kb on + strand, within B158DRAFT_2144at 279.665 kb on + strand, within B158DRAFT_2144at 279.673 kb on - strand, within B158DRAFT_2144at 279.673 kb on - strand, within B158DRAFT_2144at 279.692 kb on - strand, within B158DRAFT_2144at 279.846 kb on - strand, within B158DRAFT_2144at 279.902 kb on - strand, within B158DRAFT_2144at 280.051 kb on - strand, within B158DRAFT_2144at 280.096 kb on - strand, within B158DRAFT_2144at 280.198 kb on + strand, within B158DRAFT_2144at 280.245 kb on - strand, within B158DRAFT_2144at 280.347 kb on - strand, within B158DRAFT_2144at 280.354 kb on + strand, within B158DRAFT_2144at 280.441 kb on + strand, within B158DRAFT_2144at 280.476 kb on - strand, within B158DRAFT_2144at 280.489 kb on + strand, within B158DRAFT_2144at 280.497 kb on - strand, within B158DRAFT_2144at 280.539 kb on - strand, within B158DRAFT_2144at 280.576 kb on + strand, within B158DRAFT_2144at 280.613 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on + strand, within B158DRAFT_2144at 280.622 kb on - strand, within B158DRAFT_2144at 280.701 kb on + strand, within B158DRAFT_2144at 280.872 kb on + strand, within B158DRAFT_2144at 280.872 kb on + strand, within B158DRAFT_2144at 280.880 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.895 kb on - strand, within B158DRAFT_2144at 280.938 kb on + strandat 280.938 kb on + strandat 280.946 kb on - strandat 280.946 kb on - strandat 280.946 kb on - strandat 280.974 kb on + strandat 280.974 kb on + strandat 280.982 kb on - strandat 280.994 kb on - strandat 281.072 kb on - strandat 281.129 kb on - strandat 281.163 kb on - strandat 281.166 kb on + strandat 281.183 kb on - strandat 281.282 kb on - strandat 281.308 kb on - strandat 281.340 kb on - strandat 281.377 kb on + strand, within B158DRAFT_2145at 281.379 kb on - strand, within B158DRAFT_2145at 281.386 kb on - strand, within B158DRAFT_2145at 281.386 kb on - strand, within B158DRAFT_2145at 281.459 kb on - strand, within B158DRAFT_2145at 281.459 kb on - strand, within B158DRAFT_2145at 281.466 kb on - strand, within B158DRAFT_2145at 281.501 kb on + strand, within B158DRAFT_2145at 281.501 kb on + strand, within B158DRAFT_2145at 281.509 kb on - strand, within B158DRAFT_2145at 281.509 kb on - strand, within B158DRAFT_2145at 281.629 kb on + strand, within B158DRAFT_2145at 281.637 kb on - strand, within B158DRAFT_2145at 281.649 kb on - strand, within B158DRAFT_2145at 281.659 kb on - strand, within B158DRAFT_2145at 281.725 kb on - strand, within B158DRAFT_2145at 281.750 kb on - strand, within B158DRAFT_2145at 281.752 kb on + strand, within B158DRAFT_2145at 281.752 kb on + strand, within B158DRAFT_2145at 281.796 kb on - strand, within B158DRAFT_2145at 281.904 kb on - strand, within B158DRAFT_2145at 281.905 kb on - strand, within B158DRAFT_2145at 281.965 kb on + strand, within B158DRAFT_2145at 282.030 kb on - strand, within B158DRAFT_2145at 282.057 kb on + strand, within B158DRAFT_2145at 282.065 kb on - strand, within B158DRAFT_2145at 282.083 kb on + strand, within B158DRAFT_2145

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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277,521 - B158DRAFT_2143 0.14 +0.2
277,539 + B158DRAFT_2143 0.16 -0.3
277,547 - B158DRAFT_2143 0.17 -0.1
277,547 - B158DRAFT_2143 0.17 +0.1
277,569 - B158DRAFT_2143 0.20 -0.2
277,578 + B158DRAFT_2143 0.21 -0.0
277,649 + B158DRAFT_2143 0.29 -0.3
277,662 - B158DRAFT_2143 0.30 +0.0
277,688 + B158DRAFT_2143 0.33 -0.6
277,742 + B158DRAFT_2143 0.39 +0.1
277,754 + B158DRAFT_2143 0.41 -0.1
277,756 + B158DRAFT_2143 0.41 -0.4
277,804 + B158DRAFT_2143 0.47 -0.4
277,890 - B158DRAFT_2143 0.56 -1.1
277,895 - B158DRAFT_2143 0.57 -0.1
277,906 + B158DRAFT_2143 0.58 +0.3
277,906 + B158DRAFT_2143 0.58 -0.0
277,906 + B158DRAFT_2143 0.58 -0.2
277,906 + B158DRAFT_2143 0.58 -0.3
277,914 - B158DRAFT_2143 0.59 -0.1
277,914 - B158DRAFT_2143 0.59 -0.5
277,914 - B158DRAFT_2143 0.59 -0.3
277,914 - B158DRAFT_2143 0.59 -0.6
277,944 + B158DRAFT_2143 0.63 -0.7
277,953 + B158DRAFT_2143 0.64 -0.4
277,961 - B158DRAFT_2143 0.65 -0.8
277,966 + B158DRAFT_2143 0.65 -1.3
277,966 + B158DRAFT_2143 0.65 +0.1
277,974 - B158DRAFT_2143 0.66 -0.1
277,978 + B158DRAFT_2143 0.67 -0.5
277,983 + B158DRAFT_2143 0.67 -0.7
277,983 + B158DRAFT_2143 0.67 -0.2
277,983 + B158DRAFT_2143 0.67 -0.8
277,984 - B158DRAFT_2143 0.67 -0.2
277,996 - B158DRAFT_2143 0.69 -0.1
277,996 - B158DRAFT_2143 0.69 -0.1
277,996 - B158DRAFT_2143 0.69 -0.2
277,996 - B158DRAFT_2143 0.69 -0.4
278,016 - B158DRAFT_2143 0.71 -0.4
278,087 + B158DRAFT_2143 0.79 -0.1
278,134 + B158DRAFT_2143 0.84 -0.4
278,134 + B158DRAFT_2143 0.84 -0.3
278,134 + B158DRAFT_2143 0.84 -0.2
278,142 - B158DRAFT_2143 0.85 -0.5
278,142 - B158DRAFT_2143 0.85 +0.1
278,142 - B158DRAFT_2143 0.85 +0.1
278,142 - B158DRAFT_2143 0.85 -0.6
278,142 - B158DRAFT_2143 0.85 -0.6
278,142 - B158DRAFT_2143 0.85 -0.1
278,142 - B158DRAFT_2143 0.85 -0.1
278,142 - B158DRAFT_2143 0.85 -0.9
278,186 + -0.4
278,186 + -0.4
278,194 - -0.7
278,226 - -0.7
278,280 - +0.2
278,298 + -0.1
278,306 - -0.1
278,447 - +4.2
278,481 - +2.5
278,545 - +2.6
278,574 + +2.8
278,574 + +2.1
278,664 - +5.6
278,664 - +3.6
278,665 - +4.1
278,905 + B158DRAFT_2144 0.15 +2.9
278,953 + B158DRAFT_2144 0.17 +3.0
279,104 + B158DRAFT_2144 0.23 +3.3
279,116 + B158DRAFT_2144 0.23 +3.7
279,183 + B158DRAFT_2144 0.25 +3.6
279,184 + B158DRAFT_2144 0.26 +3.5
279,184 + B158DRAFT_2144 0.26 +3.5
279,191 - B158DRAFT_2144 0.26 +3.5
279,192 - B158DRAFT_2144 0.26 +3.8
279,192 - B158DRAFT_2144 0.26 +2.6
279,192 - B158DRAFT_2144 0.26 +4.0
279,288 + B158DRAFT_2144 0.29 +2.8
279,370 + B158DRAFT_2144 0.32 +3.6
279,378 - B158DRAFT_2144 0.33 +3.4
279,378 - B158DRAFT_2144 0.33 +3.2
279,378 - B158DRAFT_2144 0.33 +3.2
279,378 - B158DRAFT_2144 0.33 +4.2
279,459 - B158DRAFT_2144 0.36 +3.8
279,535 + B158DRAFT_2144 0.39 +3.1
279,537 + B158DRAFT_2144 0.39 +3.0
279,537 + B158DRAFT_2144 0.39 +2.9
279,537 + B158DRAFT_2144 0.39 +3.5
279,545 - B158DRAFT_2144 0.39 +2.7
279,618 + B158DRAFT_2144 0.42 +3.0
279,618 + B158DRAFT_2144 0.42 +3.1
279,618 + B158DRAFT_2144 0.42 +2.9
279,626 - B158DRAFT_2144 0.42 +3.9
279,626 - B158DRAFT_2144 0.42 +3.6
279,626 - B158DRAFT_2144 0.42 +4.2
279,626 - B158DRAFT_2144 0.42 +2.9
279,628 + B158DRAFT_2144 0.42 +3.3
279,628 + B158DRAFT_2144 0.42 +2.9
279,628 + B158DRAFT_2144 0.42 +3.5
279,636 - B158DRAFT_2144 0.42 +3.0
279,636 - B158DRAFT_2144 0.42 +2.9
279,636 - B158DRAFT_2144 0.42 +3.4
279,657 - B158DRAFT_2144 0.43 +3.4
279,665 + B158DRAFT_2144 0.43 +3.6
279,665 + B158DRAFT_2144 0.43 +2.4
279,673 - B158DRAFT_2144 0.44 +3.6
279,673 - B158DRAFT_2144 0.44 +2.5
279,692 - B158DRAFT_2144 0.44 +3.6
279,846 - B158DRAFT_2144 0.50 +3.0
279,902 - B158DRAFT_2144 0.52 +2.8
280,051 - B158DRAFT_2144 0.58 +3.3
280,096 - B158DRAFT_2144 0.60 +2.3
280,198 + B158DRAFT_2144 0.63 +5.0
280,245 - B158DRAFT_2144 0.65 +3.8
280,347 - B158DRAFT_2144 0.69 +3.0
280,354 + B158DRAFT_2144 0.69 +3.3
280,441 + B158DRAFT_2144 0.72 +3.5
280,476 - B158DRAFT_2144 0.74 +3.2
280,489 + B158DRAFT_2144 0.74 +2.6
280,497 - B158DRAFT_2144 0.74 +3.2
280,539 - B158DRAFT_2144 0.76 +3.2
280,576 + B158DRAFT_2144 0.77 +3.6
280,613 + B158DRAFT_2144 0.79 +3.2
280,622 + B158DRAFT_2144 0.79 +2.9
280,622 + B158DRAFT_2144 0.79 +3.4
280,622 + B158DRAFT_2144 0.79 +3.2
280,622 - B158DRAFT_2144 0.79 +3.5
280,701 + B158DRAFT_2144 0.82 +3.7
280,872 + B158DRAFT_2144 0.88 +3.5
280,872 + B158DRAFT_2144 0.88 +3.2
280,880 - B158DRAFT_2144 0.89 +3.4
280,895 - B158DRAFT_2144 0.89 +3.2
280,895 - B158DRAFT_2144 0.89 +3.4
280,895 - B158DRAFT_2144 0.89 +3.1
280,938 + +3.8
280,938 + +3.3
280,946 - +3.1
280,946 - +3.3
280,946 - +2.8
280,974 + +3.3
280,974 + +3.2
280,982 - +3.4
280,994 - +3.1
281,072 - +4.4
281,129 - +2.7
281,163 - +3.6
281,166 + +3.5
281,183 - +3.1
281,282 - +2.6
281,308 - +2.9
281,340 - +2.4
281,377 + B158DRAFT_2145 0.11 +3.4
281,379 - B158DRAFT_2145 0.11 +3.2
281,386 - B158DRAFT_2145 0.11 +3.8
281,386 - B158DRAFT_2145 0.11 +3.2
281,459 - B158DRAFT_2145 0.16 +3.7
281,459 - B158DRAFT_2145 0.16 +3.8
281,466 - B158DRAFT_2145 0.16 +3.1
281,501 + B158DRAFT_2145 0.18 +3.1
281,501 + B158DRAFT_2145 0.18 +2.9
281,509 - B158DRAFT_2145 0.19 +3.7
281,509 - B158DRAFT_2145 0.19 +3.4
281,629 + B158DRAFT_2145 0.26 +3.8
281,637 - B158DRAFT_2145 0.27 +3.3
281,649 - B158DRAFT_2145 0.27 +2.8
281,659 - B158DRAFT_2145 0.28 +3.3
281,725 - B158DRAFT_2145 0.32 +3.2
281,750 - B158DRAFT_2145 0.33 +2.5
281,752 + B158DRAFT_2145 0.34 +3.6
281,752 + B158DRAFT_2145 0.34 +3.6
281,796 - B158DRAFT_2145 0.36 +3.6
281,904 - B158DRAFT_2145 0.43 +3.9
281,905 - B158DRAFT_2145 0.43 +3.1
281,965 + B158DRAFT_2145 0.46 +2.9
282,030 - B158DRAFT_2145 0.50 +2.9
282,057 + B158DRAFT_2145 0.52 +3.6
282,065 - B158DRAFT_2145 0.52 +3.6
282,083 + B158DRAFT_2145 0.53 +2.9

Or see this region's nucleotide sequence