Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_2045

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_2044 and B158DRAFT_2045 are separated by 163 nucleotidesB158DRAFT_2045 and B158DRAFT_2046 are separated by 154 nucleotides B158DRAFT_2044: B158DRAFT_2044 - Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily, at 176,421 to 178,340 _2044 B158DRAFT_2045: B158DRAFT_2045 - transcriptional regulator, LuxR family, at 178,504 to 179,004 _2045 B158DRAFT_2046: B158DRAFT_2046 - Zn-dependent alcohol dehydrogenases, at 179,159 to 180,205 _2046 Position (kb) 178 179 180Strain fitness (log2 ratio) -1 0 1at 177.521 kb on + strand, within B158DRAFT_2044at 177.529 kb on - strand, within B158DRAFT_2044at 177.529 kb on - strand, within B158DRAFT_2044at 177.569 kb on + strand, within B158DRAFT_2044at 177.685 kb on + strand, within B158DRAFT_2044at 177.703 kb on + strand, within B158DRAFT_2044at 177.703 kb on + strand, within B158DRAFT_2044at 177.703 kb on + strand, within B158DRAFT_2044at 177.711 kb on - strand, within B158DRAFT_2044at 177.778 kb on + strand, within B158DRAFT_2044at 177.842 kb on + strand, within B158DRAFT_2044at 177.884 kb on - strand, within B158DRAFT_2044at 177.892 kb on + strand, within B158DRAFT_2044at 177.902 kb on + strand, within B158DRAFT_2044at 177.966 kb on + strand, within B158DRAFT_2044at 177.966 kb on + strand, within B158DRAFT_2044at 177.966 kb on + strand, within B158DRAFT_2044at 177.966 kb on + strand, within B158DRAFT_2044at 177.966 kb on + strand, within B158DRAFT_2044at 177.966 kb on + strand, within B158DRAFT_2044at 177.974 kb on - strand, within B158DRAFT_2044at 178.014 kb on + strand, within B158DRAFT_2044at 178.102 kb on + strand, within B158DRAFT_2044at 178.112 kb on + strand, within B158DRAFT_2044at 178.222 kb on + strandat 178.259 kb on + strandat 178.266 kb on - strandat 178.336 kb on + strandat 178.405 kb on + strandat 178.413 kb on - strandat 178.457 kb on - strandat 178.565 kb on + strand, within B158DRAFT_2045at 178.572 kb on + strand, within B158DRAFT_2045at 178.572 kb on + strand, within B158DRAFT_2045at 178.572 kb on + strand, within B158DRAFT_2045at 178.572 kb on + strand, within B158DRAFT_2045at 178.573 kb on - strand, within B158DRAFT_2045at 178.580 kb on - strand, within B158DRAFT_2045at 178.580 kb on - strand, within B158DRAFT_2045at 178.580 kb on - strand, within B158DRAFT_2045at 178.580 kb on - strand, within B158DRAFT_2045at 178.580 kb on - strand, within B158DRAFT_2045at 178.700 kb on - strand, within B158DRAFT_2045at 178.714 kb on + strand, within B158DRAFT_2045at 178.811 kb on + strand, within B158DRAFT_2045at 178.861 kb on + strand, within B158DRAFT_2045at 178.869 kb on - strand, within B158DRAFT_2045at 178.896 kb on - strand, within B158DRAFT_2045at 178.960 kb on + strandat 178.968 kb on - strandat 179.031 kb on + strandat 179.032 kb on + strandat 179.073 kb on - strandat 179.101 kb on + strandat 179.101 kb on + strandat 179.115 kb on + strandat 179.115 kb on + strandat 179.115 kb on + strandat 179.115 kb on + strandat 179.115 kb on + strandat 179.123 kb on - strandat 179.123 kb on - strandat 179.123 kb on - strandat 179.123 kb on - strandat 179.215 kb on - strandat 179.217 kb on - strandat 179.258 kb on + strandat 179.265 kb on + strand, within B158DRAFT_2046at 179.273 kb on - strand, within B158DRAFT_2046at 179.287 kb on + strand, within B158DRAFT_2046at 179.287 kb on + strand, within B158DRAFT_2046at 179.311 kb on + strand, within B158DRAFT_2046at 179.320 kb on + strand, within B158DRAFT_2046at 179.462 kb on + strand, within B158DRAFT_2046at 179.486 kb on + strand, within B158DRAFT_2046at 179.494 kb on - strand, within B158DRAFT_2046at 179.498 kb on + strand, within B158DRAFT_2046at 179.498 kb on + strand, within B158DRAFT_2046at 179.506 kb on - strand, within B158DRAFT_2046at 179.506 kb on - strand, within B158DRAFT_2046at 179.506 kb on - strand, within B158DRAFT_2046at 179.533 kb on + strand, within B158DRAFT_2046at 179.621 kb on + strand, within B158DRAFT_2046at 179.629 kb on - strand, within B158DRAFT_2046at 179.727 kb on + strand, within B158DRAFT_2046at 179.735 kb on - strand, within B158DRAFT_2046at 179.737 kb on + strand, within B158DRAFT_2046at 179.737 kb on + strand, within B158DRAFT_2046at 179.737 kb on + strand, within B158DRAFT_2046at 179.740 kb on - strand, within B158DRAFT_2046at 179.751 kb on + strand, within B158DRAFT_2046at 179.788 kb on + strand, within B158DRAFT_2046at 179.796 kb on - strand, within B158DRAFT_2046at 179.796 kb on - strand, within B158DRAFT_2046at 179.830 kb on - strand, within B158DRAFT_2046at 179.876 kb on - strand, within B158DRAFT_2046at 179.915 kb on - strand, within B158DRAFT_2046at 179.938 kb on + strand, within B158DRAFT_2046at 179.975 kb on + strand, within B158DRAFT_2046at 180.004 kb on - strand, within B158DRAFT_2046

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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177,521 + B158DRAFT_2044 0.57 +0.1
177,529 - B158DRAFT_2044 0.58 -0.3
177,529 - B158DRAFT_2044 0.58 -1.3
177,569 + B158DRAFT_2044 0.60 -0.1
177,685 + B158DRAFT_2044 0.66 -0.1
177,703 + B158DRAFT_2044 0.67 -0.0
177,703 + B158DRAFT_2044 0.67 -0.3
177,703 + B158DRAFT_2044 0.67 +0.4
177,711 - B158DRAFT_2044 0.67 -0.2
177,778 + B158DRAFT_2044 0.71 +0.4
177,842 + B158DRAFT_2044 0.74 -0.5
177,884 - B158DRAFT_2044 0.76 -0.2
177,892 + B158DRAFT_2044 0.77 -0.2
177,902 + B158DRAFT_2044 0.77 -0.2
177,966 + B158DRAFT_2044 0.80 +0.9
177,966 + B158DRAFT_2044 0.80 -0.2
177,966 + B158DRAFT_2044 0.80 -0.4
177,966 + B158DRAFT_2044 0.80 +0.3
177,966 + B158DRAFT_2044 0.80 -0.1
177,966 + B158DRAFT_2044 0.80 +0.1
177,974 - B158DRAFT_2044 0.81 -0.7
178,014 + B158DRAFT_2044 0.83 -0.9
178,102 + B158DRAFT_2044 0.88 +1.1
178,112 + B158DRAFT_2044 0.88 +0.2
178,222 + +0.3
178,259 + -0.1
178,266 - -0.6
178,336 + -0.3
178,405 + +0.1
178,413 - -0.1
178,457 - -0.1
178,565 + B158DRAFT_2045 0.12 -0.3
178,572 + B158DRAFT_2045 0.14 -0.5
178,572 + B158DRAFT_2045 0.14 +0.2
178,572 + B158DRAFT_2045 0.14 -0.4
178,572 + B158DRAFT_2045 0.14 -0.1
178,573 - B158DRAFT_2045 0.14 +0.1
178,580 - B158DRAFT_2045 0.15 -0.2
178,580 - B158DRAFT_2045 0.15 -0.6
178,580 - B158DRAFT_2045 0.15 -0.6
178,580 - B158DRAFT_2045 0.15 -0.4
178,580 - B158DRAFT_2045 0.15 -0.8
178,700 - B158DRAFT_2045 0.39 -0.8
178,714 + B158DRAFT_2045 0.42 -0.3
178,811 + B158DRAFT_2045 0.61 -0.4
178,861 + B158DRAFT_2045 0.71 -0.3
178,869 - B158DRAFT_2045 0.73 -0.1
178,896 - B158DRAFT_2045 0.78 -0.1
178,960 + -0.2
178,968 - +0.0
179,031 + -0.2
179,032 + +0.1
179,073 - +0.2
179,101 + +0.1
179,101 + +0.2
179,115 + -0.4
179,115 + -0.1
179,115 + +0.2
179,115 + +0.3
179,115 + +0.3
179,123 - -1.0
179,123 - -0.1
179,123 - -0.3
179,123 - -0.1
179,215 - +0.0
179,217 - -1.1
179,258 + -0.0
179,265 + B158DRAFT_2046 0.10 -0.1
179,273 - B158DRAFT_2046 0.11 +0.3
179,287 + B158DRAFT_2046 0.12 -0.4
179,287 + B158DRAFT_2046 0.12 -0.0
179,311 + B158DRAFT_2046 0.15 -0.1
179,320 + B158DRAFT_2046 0.15 -0.1
179,462 + B158DRAFT_2046 0.29 +0.2
179,486 + B158DRAFT_2046 0.31 -0.2
179,494 - B158DRAFT_2046 0.32 -0.3
179,498 + B158DRAFT_2046 0.32 -0.6
179,498 + B158DRAFT_2046 0.32 -0.1
179,506 - B158DRAFT_2046 0.33 -0.0
179,506 - B158DRAFT_2046 0.33 +0.0
179,506 - B158DRAFT_2046 0.33 +0.1
179,533 + B158DRAFT_2046 0.36 -0.3
179,621 + B158DRAFT_2046 0.44 +0.4
179,629 - B158DRAFT_2046 0.45 -0.1
179,727 + B158DRAFT_2046 0.54 +0.0
179,735 - B158DRAFT_2046 0.55 -0.4
179,737 + B158DRAFT_2046 0.55 -0.7
179,737 + B158DRAFT_2046 0.55 -0.1
179,737 + B158DRAFT_2046 0.55 -0.1
179,740 - B158DRAFT_2046 0.55 +0.1
179,751 + B158DRAFT_2046 0.57 +0.5
179,788 + B158DRAFT_2046 0.60 -0.4
179,796 - B158DRAFT_2046 0.61 +0.0
179,796 - B158DRAFT_2046 0.61 +0.1
179,830 - B158DRAFT_2046 0.64 +0.1
179,876 - B158DRAFT_2046 0.68 -0.9
179,915 - B158DRAFT_2046 0.72 -0.4
179,938 + B158DRAFT_2046 0.74 -0.1
179,975 + B158DRAFT_2046 0.78 +0.1
180,004 - B158DRAFT_2046 0.81 -0.1

Or see this region's nucleotide sequence