Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_1577

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_1574 and B158DRAFT_1575 are separated by 27 nucleotidesB158DRAFT_1575 and B158DRAFT_1576 are separated by 2 nucleotidesB158DRAFT_1576 and B158DRAFT_1577 are separated by 167 nucleotidesB158DRAFT_1577 and B158DRAFT_1578 are separated by 411 nucleotides B158DRAFT_1574: B158DRAFT_1574 - ribonuclease D, at 1,633,733 to 1,634,887 _1574 B158DRAFT_1575: B158DRAFT_1575 - Uncharacterized protein conserved in bacteria, at 1,634,915 to 1,635,181 _1575 B158DRAFT_1576: B158DRAFT_1576 - Uncharacterized conserved protein, at 1,635,184 to 1,635,633 _1576 B158DRAFT_1577: B158DRAFT_1577 - tRNA_Asp_GTC, at 1,635,801 to 1,635,877 _1577 B158DRAFT_1578: B158DRAFT_1578 - signal peptide peptidase SppA, 67K type, at 1,636,289 to 1,638,166 _1578 Position (kb) 1635 1636Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 1634.842 kb on - strandat 1634.856 kb on + strandat 1635.003 kb on + strand, within B158DRAFT_1575at 1635.008 kb on + strand, within B158DRAFT_1575at 1635.011 kb on - strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.013 kb on + strand, within B158DRAFT_1575at 1635.024 kb on + strand, within B158DRAFT_1575at 1635.024 kb on + strand, within B158DRAFT_1575at 1635.032 kb on - strand, within B158DRAFT_1575at 1635.032 kb on - strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.066 kb on + strand, within B158DRAFT_1575at 1635.074 kb on - strand, within B158DRAFT_1575at 1635.074 kb on - strand, within B158DRAFT_1575at 1635.074 kb on - strand, within B158DRAFT_1575at 1635.116 kb on + strand, within B158DRAFT_1575at 1635.220 kb on + strandat 1635.227 kb on + strandat 1635.267 kb on + strand, within B158DRAFT_1576at 1635.275 kb on + strand, within B158DRAFT_1576at 1635.342 kb on + strand, within B158DRAFT_1576at 1635.342 kb on - strand, within B158DRAFT_1576at 1635.344 kb on + strand, within B158DRAFT_1576at 1635.344 kb on + strand, within B158DRAFT_1576at 1635.352 kb on - strand, within B158DRAFT_1576at 1635.398 kb on + strand, within B158DRAFT_1576at 1635.398 kb on + strand, within B158DRAFT_1576at 1635.398 kb on + strand, within B158DRAFT_1576at 1635.406 kb on - strand, within B158DRAFT_1576at 1635.406 kb on - strand, within B158DRAFT_1576at 1635.419 kb on + strand, within B158DRAFT_1576at 1635.427 kb on - strand, within B158DRAFT_1576at 1635.427 kb on - strand, within B158DRAFT_1576at 1635.435 kb on - strand, within B158DRAFT_1576at 1635.447 kb on + strand, within B158DRAFT_1576at 1635.447 kb on + strand, within B158DRAFT_1576at 1635.447 kb on + strand, within B158DRAFT_1576at 1635.450 kb on - strand, within B158DRAFT_1576at 1635.455 kb on - strand, within B158DRAFT_1576at 1635.455 kb on - strand, within B158DRAFT_1576at 1635.455 kb on - strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.474 kb on + strand, within B158DRAFT_1576at 1635.476 kb on + strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.482 kb on - strand, within B158DRAFT_1576at 1635.484 kb on - strand, within B158DRAFT_1576at 1635.484 kb on - strand, within B158DRAFT_1576at 1635.547 kb on + strand, within B158DRAFT_1576at 1635.826 kb on - strand, within B158DRAFT_1577at 1635.826 kb on - strand, within B158DRAFT_1577at 1635.853 kb on + strand, within B158DRAFT_1577at 1635.864 kb on + strand, within B158DRAFT_1577at 1635.893 kb on + strandat 1635.984 kb on - strandat 1636.054 kb on + strandat 1636.062 kb on - strandat 1636.062 kb on - strandat 1636.107 kb on - strandat 1636.115 kb on - strandat 1636.136 kb on - strandat 1636.300 kb on + strandat 1636.300 kb on + strandat 1636.300 kb on + strandat 1636.300 kb on + strandat 1636.302 kb on + strandat 1636.310 kb on + strandat 1636.310 kb on - strandat 1636.310 kb on - strandat 1636.314 kb on + strandat 1636.333 kb on - strandat 1636.404 kb on + strandat 1636.407 kb on + strandat 1636.440 kb on + strandat 1636.447 kb on - strandat 1636.454 kb on - strandat 1636.466 kb on + strandat 1636.488 kb on + strand, within B158DRAFT_1578at 1636.496 kb on - strand, within B158DRAFT_1578at 1636.496 kb on - strand, within B158DRAFT_1578at 1636.527 kb on + strand, within B158DRAFT_1578at 1636.594 kb on + strand, within B158DRAFT_1578at 1636.666 kb on + strand, within B158DRAFT_1578at 1636.666 kb on + strand, within B158DRAFT_1578at 1636.687 kb on + strand, within B158DRAFT_1578at 1636.687 kb on + strand, within B158DRAFT_1578at 1636.700 kb on + strand, within B158DRAFT_1578at 1636.711 kb on + strand, within B158DRAFT_1578at 1636.719 kb on - strand, within B158DRAFT_1578at 1636.733 kb on - strand, within B158DRAFT_1578at 1636.733 kb on - strand, within B158DRAFT_1578at 1636.821 kb on - strand, within B158DRAFT_1578at 1636.823 kb on + strand, within B158DRAFT_1578at 1636.831 kb on - strand, within B158DRAFT_1578at 1636.831 kb on - strand, within B158DRAFT_1578at 1636.841 kb on + strand, within B158DRAFT_1578at 1636.849 kb on - strand, within B158DRAFT_1578at 1636.849 kb on - strand, within B158DRAFT_1578

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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1,634,842 - -0.5
1,634,856 + -0.3
1,635,003 + B158DRAFT_1575 0.33 -0.6
1,635,008 + B158DRAFT_1575 0.35 +0.2
1,635,011 - B158DRAFT_1575 0.36 -0.8
1,635,013 + B158DRAFT_1575 0.37 -1.4
1,635,013 + B158DRAFT_1575 0.37 +0.0
1,635,013 + B158DRAFT_1575 0.37 +0.1
1,635,013 + B158DRAFT_1575 0.37 -0.3
1,635,013 + B158DRAFT_1575 0.37 +0.1
1,635,013 + B158DRAFT_1575 0.37 -0.2
1,635,013 + B158DRAFT_1575 0.37 -0.4
1,635,013 + B158DRAFT_1575 0.37 -0.6
1,635,024 + B158DRAFT_1575 0.41 -0.3
1,635,024 + B158DRAFT_1575 0.41 -1.2
1,635,032 - B158DRAFT_1575 0.44 -0.3
1,635,032 - B158DRAFT_1575 0.44 +0.0
1,635,066 + B158DRAFT_1575 0.57 -0.3
1,635,066 + B158DRAFT_1575 0.57 +0.4
1,635,066 + B158DRAFT_1575 0.57 +0.3
1,635,066 + B158DRAFT_1575 0.57 -0.1
1,635,074 - B158DRAFT_1575 0.60 -0.1
1,635,074 - B158DRAFT_1575 0.60 +0.2
1,635,074 - B158DRAFT_1575 0.60 -0.1
1,635,116 + B158DRAFT_1575 0.75 -0.2
1,635,220 + -1.2
1,635,227 + -0.1
1,635,267 + B158DRAFT_1576 0.18 +0.0
1,635,275 + B158DRAFT_1576 0.20 +0.2
1,635,342 + B158DRAFT_1576 0.35 +0.0
1,635,342 - B158DRAFT_1576 0.35 -0.4
1,635,344 + B158DRAFT_1576 0.36 +0.1
1,635,344 + B158DRAFT_1576 0.36 -0.0
1,635,352 - B158DRAFT_1576 0.37 +0.1
1,635,398 + B158DRAFT_1576 0.48 -0.4
1,635,398 + B158DRAFT_1576 0.48 +0.7
1,635,398 + B158DRAFT_1576 0.48 -1.1
1,635,406 - B158DRAFT_1576 0.49 -1.1
1,635,406 - B158DRAFT_1576 0.49 -0.2
1,635,419 + B158DRAFT_1576 0.52 -0.6
1,635,427 - B158DRAFT_1576 0.54 +1.5
1,635,427 - B158DRAFT_1576 0.54 -0.1
1,635,435 - B158DRAFT_1576 0.56 +0.1
1,635,447 + B158DRAFT_1576 0.58 -1.1
1,635,447 + B158DRAFT_1576 0.58 -0.2
1,635,447 + B158DRAFT_1576 0.58 -0.0
1,635,450 - B158DRAFT_1576 0.59 +0.1
1,635,455 - B158DRAFT_1576 0.60 -0.3
1,635,455 - B158DRAFT_1576 0.60 +0.1
1,635,455 - B158DRAFT_1576 0.60 +0.1
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 -0.4
1,635,474 + B158DRAFT_1576 0.64 -0.2
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 -0.6
1,635,474 + B158DRAFT_1576 0.64 -0.1
1,635,474 + B158DRAFT_1576 0.64 -0.2
1,635,476 + B158DRAFT_1576 0.65 +0.3
1,635,482 - B158DRAFT_1576 0.66 -0.3
1,635,482 - B158DRAFT_1576 0.66 +0.0
1,635,482 - B158DRAFT_1576 0.66 -0.5
1,635,482 - B158DRAFT_1576 0.66 +0.3
1,635,482 - B158DRAFT_1576 0.66 +0.9
1,635,482 - B158DRAFT_1576 0.66 +0.1
1,635,482 - B158DRAFT_1576 0.66 +0.3
1,635,482 - B158DRAFT_1576 0.66 -0.2
1,635,484 - B158DRAFT_1576 0.67 -0.2
1,635,484 - B158DRAFT_1576 0.67 +0.3
1,635,547 + B158DRAFT_1576 0.81 -0.1
1,635,826 - B158DRAFT_1577 0.32 -2.1
1,635,826 - B158DRAFT_1577 0.32 -2.3
1,635,853 + B158DRAFT_1577 0.68 -0.1
1,635,864 + B158DRAFT_1577 0.82 -1.4
1,635,893 + -0.6
1,635,984 - +0.3
1,636,054 + -0.5
1,636,062 - -0.7
1,636,062 - -0.1
1,636,107 - -0.9
1,636,115 - -0.6
1,636,136 - +0.1
1,636,300 + +1.7
1,636,300 + +0.9
1,636,300 + +2.9
1,636,300 + +2.6
1,636,302 + +2.8
1,636,310 + +7.6
1,636,310 - +1.7
1,636,310 - +1.8
1,636,314 + +8.1
1,636,333 - +8.2
1,636,404 + +7.6
1,636,407 + +7.5
1,636,440 + +7.5
1,636,447 - +8.5
1,636,454 - +8.0
1,636,466 + +7.8
1,636,488 + B158DRAFT_1578 0.11 +7.7
1,636,496 - B158DRAFT_1578 0.11 +8.1
1,636,496 - B158DRAFT_1578 0.11 +8.2
1,636,527 + B158DRAFT_1578 0.13 +7.7
1,636,594 + B158DRAFT_1578 0.16 +8.0
1,636,666 + B158DRAFT_1578 0.20 +7.9
1,636,666 + B158DRAFT_1578 0.20 +7.8
1,636,687 + B158DRAFT_1578 0.21 +7.5
1,636,687 + B158DRAFT_1578 0.21 +8.0
1,636,700 + B158DRAFT_1578 0.22 +7.7
1,636,711 + B158DRAFT_1578 0.22 +7.7
1,636,719 - B158DRAFT_1578 0.23 +8.0
1,636,733 - B158DRAFT_1578 0.24 +7.7
1,636,733 - B158DRAFT_1578 0.24 +7.7
1,636,821 - B158DRAFT_1578 0.28 +7.6
1,636,823 + B158DRAFT_1578 0.28 +7.6
1,636,831 - B158DRAFT_1578 0.29 +8.2
1,636,831 - B158DRAFT_1578 0.29 +8.3
1,636,841 + B158DRAFT_1578 0.29 +7.7
1,636,849 - B158DRAFT_1578 0.30 +7.9
1,636,849 - B158DRAFT_1578 0.30 +8.0

Or see this region's nucleotide sequence