Experiment: m.b. Rifampicin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0995 and B158DRAFT_0996 are separated by 74 nucleotides B158DRAFT_0996 and B158DRAFT_0997 are separated by 32 nucleotides
B158DRAFT_0995: B158DRAFT_0995 - adhesin-associated sorting protein (DUF1329) (from data) , at 1,029,175 to 1,030,557
_0995
B158DRAFT_0996: B158DRAFT_0996 - adhesin-associated BNR repeat protein (from data) , at 1,030,632 to 1,031,639
_0996
B158DRAFT_0997: B158DRAFT_0997 - adhesin-associated MmpL efflux pump (from data) , at 1,031,672 to 1,034,020
_0997
Position (kb)
1030
1031
1032 Strain fitness (log2 ratio)
-2
-1
0
1 at 1029.701 kb on + strand, within B158DRAFT_0995 at 1029.741 kb on + strand, within B158DRAFT_0995 at 1029.749 kb on - strand, within B158DRAFT_0995 at 1029.749 kb on - strand, within B158DRAFT_0995 at 1029.749 kb on - strand, within B158DRAFT_0995 at 1029.786 kb on + strand, within B158DRAFT_0995 at 1029.794 kb on - strand, within B158DRAFT_0995 at 1029.823 kb on + strand, within B158DRAFT_0995 at 1029.859 kb on - strand, within B158DRAFT_0995 at 1029.869 kb on - strand, within B158DRAFT_0995 at 1029.938 kb on + strand, within B158DRAFT_0995 at 1029.946 kb on - strand, within B158DRAFT_0995 at 1029.971 kb on + strand, within B158DRAFT_0995 at 1029.976 kb on + strand, within B158DRAFT_0995 at 1029.976 kb on + strand, within B158DRAFT_0995 at 1029.976 kb on + strand, within B158DRAFT_0995 at 1029.976 kb on + strand, within B158DRAFT_0995 at 1029.976 kb on + strand, within B158DRAFT_0995 at 1029.984 kb on - strand, within B158DRAFT_0995 at 1029.984 kb on - strand, within B158DRAFT_0995 at 1029.984 kb on - strand, within B158DRAFT_0995 at 1029.984 kb on - strand, within B158DRAFT_0995 at 1029.985 kb on + strand, within B158DRAFT_0995 at 1029.985 kb on + strand, within B158DRAFT_0995 at 1030.002 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.068 kb on + strand, within B158DRAFT_0995 at 1030.076 kb on - strand, within B158DRAFT_0995 at 1030.076 kb on - strand, within B158DRAFT_0995 at 1030.076 kb on - strand, within B158DRAFT_0995 at 1030.076 kb on - strand, within B158DRAFT_0995 at 1030.076 kb on - strand, within B158DRAFT_0995 at 1030.139 kb on + strand, within B158DRAFT_0995 at 1030.194 kb on + strand, within B158DRAFT_0995 at 1030.199 kb on + strand, within B158DRAFT_0995 at 1030.204 kb on + strand, within B158DRAFT_0995 at 1030.237 kb on - strand, within B158DRAFT_0995 at 1030.298 kb on - strand, within B158DRAFT_0995 at 1030.300 kb on + strand, within B158DRAFT_0995 at 1030.308 kb on - strand, within B158DRAFT_0995 at 1030.351 kb on + strand, within B158DRAFT_0995 at 1030.353 kb on + strand, within B158DRAFT_0995 at 1030.359 kb on + strand, within B158DRAFT_0995 at 1030.359 kb on - strand, within B158DRAFT_0995 at 1030.359 kb on - strand, within B158DRAFT_0995 at 1030.359 kb on - strand, within B158DRAFT_0995 at 1030.361 kb on - strand, within B158DRAFT_0995 at 1030.371 kb on + strand, within B158DRAFT_0995 at 1030.445 kb on - strand at 1030.531 kb on + strand at 1030.531 kb on + strand at 1030.539 kb on - strand at 1030.539 kb on - strand at 1030.539 kb on - strand at 1030.539 kb on - strand at 1030.539 kb on - strand at 1030.539 kb on - strand at 1030.546 kb on + strand at 1030.554 kb on - strand at 1030.554 kb on - strand at 1030.609 kb on - strand at 1030.620 kb on + strand at 1030.628 kb on - strand at 1030.633 kb on - strand at 1030.716 kb on + strand at 1030.801 kb on - strand, within B158DRAFT_0996 at 1030.807 kb on + strand, within B158DRAFT_0996 at 1030.832 kb on - strand, within B158DRAFT_0996 at 1030.847 kb on + strand, within B158DRAFT_0996 at 1030.932 kb on + strand, within B158DRAFT_0996 at 1031.066 kb on - strand, within B158DRAFT_0996 at 1031.098 kb on - strand, within B158DRAFT_0996 at 1031.098 kb on - strand, within B158DRAFT_0996 at 1031.100 kb on + strand, within B158DRAFT_0996 at 1031.109 kb on - strand, within B158DRAFT_0996 at 1031.155 kb on - strand, within B158DRAFT_0996 at 1031.155 kb on - strand, within B158DRAFT_0996 at 1031.155 kb on - strand, within B158DRAFT_0996 at 1031.212 kb on + strand, within B158DRAFT_0996 at 1031.271 kb on + strand, within B158DRAFT_0996 at 1031.554 kb on + strand at 1031.654 kb on + strand at 1031.733 kb on + strand at 1031.842 kb on + strand at 1031.883 kb on - strand at 1032.006 kb on - strand, within B158DRAFT_0997 at 1032.030 kb on + strand, within B158DRAFT_0997 at 1032.035 kb on - strand, within B158DRAFT_0997 at 1032.133 kb on + strand, within B158DRAFT_0997 at 1032.303 kb on - strand, within B158DRAFT_0997 at 1032.325 kb on - strand, within B158DRAFT_0997 at 1032.342 kb on + strand, within B158DRAFT_0997 at 1032.418 kb on + strand, within B158DRAFT_0997 at 1032.423 kb on + strand, within B158DRAFT_0997 at 1032.423 kb on + strand, within B158DRAFT_0997 at 1032.431 kb on - strand, within B158DRAFT_0997 at 1032.431 kb on - strand, within B158DRAFT_0997 at 1032.431 kb on - strand, within B158DRAFT_0997 at 1032.456 kb on + strand, within B158DRAFT_0997 at 1032.456 kb on + strand, within B158DRAFT_0997 at 1032.528 kb on + strand, within B158DRAFT_0997 at 1032.535 kb on - strand, within B158DRAFT_0997 at 1032.594 kb on + strand, within B158DRAFT_0997 at 1032.594 kb on + strand, within B158DRAFT_0997 at 1032.602 kb on - strand, within B158DRAFT_0997 at 1032.610 kb on + strand, within B158DRAFT_0997 at 1032.610 kb on + strand, within B158DRAFT_0997 at 1032.625 kb on + strand, within B158DRAFT_0997 at 1032.628 kb on - strand, within B158DRAFT_0997 at 1032.628 kb on - strand, within B158DRAFT_0997 at 1032.628 kb on - strand, within B158DRAFT_0997 at 1032.630 kb on + strand, within B158DRAFT_0997 at 1032.638 kb on - strand, within B158DRAFT_0997
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml remove 1,029,701 + B158DRAFT_0995 0.38 -0.5 1,029,741 + B158DRAFT_0995 0.41 +0.3 1,029,749 - B158DRAFT_0995 0.42 -0.2 1,029,749 - B158DRAFT_0995 0.42 -0.1 1,029,749 - B158DRAFT_0995 0.42 +0.0 1,029,786 + B158DRAFT_0995 0.44 -0.0 1,029,794 - B158DRAFT_0995 0.45 +0.0 1,029,823 + B158DRAFT_0995 0.47 -0.6 1,029,859 - B158DRAFT_0995 0.49 -0.2 1,029,869 - B158DRAFT_0995 0.50 -1.8 1,029,938 + B158DRAFT_0995 0.55 +0.2 1,029,946 - B158DRAFT_0995 0.56 +0.1 1,029,971 + B158DRAFT_0995 0.58 -0.3 1,029,976 + B158DRAFT_0995 0.58 +0.1 1,029,976 + B158DRAFT_0995 0.58 +0.2 1,029,976 + B158DRAFT_0995 0.58 +0.1 1,029,976 + B158DRAFT_0995 0.58 -0.2 1,029,976 + B158DRAFT_0995 0.58 -0.4 1,029,984 - B158DRAFT_0995 0.58 -0.5 1,029,984 - B158DRAFT_0995 0.58 +0.5 1,029,984 - B158DRAFT_0995 0.58 -0.1 1,029,984 - B158DRAFT_0995 0.58 +0.2 1,029,985 + B158DRAFT_0995 0.59 -0.0 1,029,985 + B158DRAFT_0995 0.59 -0.4 1,030,002 + B158DRAFT_0995 0.60 +0.4 1,030,068 + B158DRAFT_0995 0.65 +0.2 1,030,068 + B158DRAFT_0995 0.65 +0.3 1,030,068 + B158DRAFT_0995 0.65 -0.3 1,030,068 + B158DRAFT_0995 0.65 -0.6 1,030,068 + B158DRAFT_0995 0.65 -0.3 1,030,068 + B158DRAFT_0995 0.65 +0.0 1,030,068 + B158DRAFT_0995 0.65 -0.1 1,030,068 + B158DRAFT_0995 0.65 +0.2 1,030,068 + B158DRAFT_0995 0.65 -0.1 1,030,068 + B158DRAFT_0995 0.65 -1.0 1,030,068 + B158DRAFT_0995 0.65 -0.6 1,030,076 - B158DRAFT_0995 0.65 +0.8 1,030,076 - B158DRAFT_0995 0.65 -0.1 1,030,076 - B158DRAFT_0995 0.65 +0.1 1,030,076 - B158DRAFT_0995 0.65 -0.1 1,030,076 - B158DRAFT_0995 0.65 +0.3 1,030,139 + B158DRAFT_0995 0.70 +0.1 1,030,194 + B158DRAFT_0995 0.74 -0.2 1,030,199 + B158DRAFT_0995 0.74 +0.1 1,030,204 + B158DRAFT_0995 0.74 -0.4 1,030,237 - B158DRAFT_0995 0.77 +0.3 1,030,298 - B158DRAFT_0995 0.81 -0.1 1,030,300 + B158DRAFT_0995 0.81 -0.1 1,030,308 - B158DRAFT_0995 0.82 +0.1 1,030,351 + B158DRAFT_0995 0.85 +0.4 1,030,353 + B158DRAFT_0995 0.85 -0.4 1,030,359 + B158DRAFT_0995 0.86 +0.2 1,030,359 - B158DRAFT_0995 0.86 -0.1 1,030,359 - B158DRAFT_0995 0.86 +0.5 1,030,359 - B158DRAFT_0995 0.86 +0.4 1,030,361 - B158DRAFT_0995 0.86 +0.1 1,030,371 + B158DRAFT_0995 0.86 -0.0 1,030,445 - +0.0 1,030,531 + +0.9 1,030,531 + -0.1 1,030,539 - +0.3 1,030,539 - -0.1 1,030,539 - +0.2 1,030,539 - +0.1 1,030,539 - +0.2 1,030,539 - +0.1 1,030,546 + +0.2 1,030,554 - -0.4 1,030,554 - +0.3 1,030,609 - +0.4 1,030,620 + +0.5 1,030,628 - +0.4 1,030,633 - +0.5 1,030,716 + +0.3 1,030,801 - B158DRAFT_0996 0.17 +0.4 1,030,807 + B158DRAFT_0996 0.17 +0.6 1,030,832 - B158DRAFT_0996 0.20 +0.2 1,030,847 + B158DRAFT_0996 0.21 +1.7 1,030,932 + B158DRAFT_0996 0.30 +0.5 1,031,066 - B158DRAFT_0996 0.43 +0.9 1,031,098 - B158DRAFT_0996 0.46 +0.4 1,031,098 - B158DRAFT_0996 0.46 +0.1 1,031,100 + B158DRAFT_0996 0.46 +0.5 1,031,109 - B158DRAFT_0996 0.47 +0.3 1,031,155 - B158DRAFT_0996 0.52 +0.1 1,031,155 - B158DRAFT_0996 0.52 +0.1 1,031,155 - B158DRAFT_0996 0.52 +0.6 1,031,212 + B158DRAFT_0996 0.58 -0.0 1,031,271 + B158DRAFT_0996 0.63 +0.5 1,031,554 + -0.0 1,031,654 + +0.1 1,031,733 + +0.6 1,031,842 + +0.5 1,031,883 - +0.2 1,032,006 - B158DRAFT_0997 0.14 +0.5 1,032,030 + B158DRAFT_0997 0.15 -0.3 1,032,035 - B158DRAFT_0997 0.15 +0.0 1,032,133 + B158DRAFT_0997 0.20 +0.6 1,032,303 - B158DRAFT_0997 0.27 +0.3 1,032,325 - B158DRAFT_0997 0.28 +0.6 1,032,342 + B158DRAFT_0997 0.29 +0.1 1,032,418 + B158DRAFT_0997 0.32 +0.2 1,032,423 + B158DRAFT_0997 0.32 +0.4 1,032,423 + B158DRAFT_0997 0.32 +0.5 1,032,431 - B158DRAFT_0997 0.32 +0.6 1,032,431 - B158DRAFT_0997 0.32 +0.7 1,032,431 - B158DRAFT_0997 0.32 +1.4 1,032,456 + B158DRAFT_0997 0.33 +0.7 1,032,456 + B158DRAFT_0997 0.33 +0.4 1,032,528 + B158DRAFT_0997 0.36 +0.0 1,032,535 - B158DRAFT_0997 0.37 +0.4 1,032,594 + B158DRAFT_0997 0.39 -0.5 1,032,594 + B158DRAFT_0997 0.39 -0.0 1,032,602 - B158DRAFT_0997 0.40 +0.7 1,032,610 + B158DRAFT_0997 0.40 +0.4 1,032,610 + B158DRAFT_0997 0.40 +0.1 1,032,625 + B158DRAFT_0997 0.41 +0.2 1,032,628 - B158DRAFT_0997 0.41 +0.3 1,032,628 - B158DRAFT_0997 0.41 -0.1 1,032,628 - B158DRAFT_0997 0.41 +0.3 1,032,630 + B158DRAFT_0997 0.41 -1.1 1,032,638 - B158DRAFT_0997 0.41 +0.1
Or see this region's nucleotide sequence