Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0873

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0871 and B158DRAFT_0872 are separated by 21 nucleotidesB158DRAFT_0872 and B158DRAFT_0873 are separated by 100 nucleotidesB158DRAFT_0873 and B158DRAFT_0874 are separated by 76 nucleotidesB158DRAFT_0874 and B158DRAFT_0875 overlap by 4 nucleotidesB158DRAFT_0875 and B158DRAFT_0876 are separated by 107 nucleotides B158DRAFT_0871: B158DRAFT_0871 - Diacylglycerol kinase, at 887,879 to 888,250 _0871 B158DRAFT_0872: B158DRAFT_0872 - Predicted hydrolase of the alpha/beta-hydrolase fold, at 888,272 to 888,895 _0872 B158DRAFT_0873: B158DRAFT_0873 - DNA adenine methylase Dam, at 888,996 to 889,829 _0873 B158DRAFT_0874: B158DRAFT_0874 - Protein of unknown function (DUF2970)., at 889,906 to 890,190 _0874 B158DRAFT_0875: B158DRAFT_0875 - hypothetical protein, at 890,187 to 890,501 _0875 B158DRAFT_0876: B158DRAFT_0876 - 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (EC 2.5.1.54), at 890,609 to 891,988 _0876 Position (kb) 888 889 890Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 888.002 kb on - strand, within B158DRAFT_0871at 888.124 kb on + strand, within B158DRAFT_0871at 888.155 kb on - strand, within B158DRAFT_0871at 888.156 kb on - strand, within B158DRAFT_0871at 888.184 kb on - strand, within B158DRAFT_0871at 888.184 kb on - strand, within B158DRAFT_0871at 888.199 kb on + strand, within B158DRAFT_0871at 888.200 kb on - strand, within B158DRAFT_0871at 888.207 kb on - strand, within B158DRAFT_0871at 888.220 kb on - strandat 888.256 kb on - strandat 888.270 kb on + strandat 888.270 kb on + strandat 888.270 kb on + strandat 888.270 kb on + strandat 888.278 kb on - strandat 888.278 kb on - strandat 888.331 kb on - strandat 888.331 kb on - strandat 888.340 kb on + strand, within B158DRAFT_0872at 888.340 kb on + strand, within B158DRAFT_0872at 888.341 kb on - strand, within B158DRAFT_0872at 888.348 kb on - strand, within B158DRAFT_0872at 888.349 kb on + strand, within B158DRAFT_0872at 888.349 kb on + strand, within B158DRAFT_0872at 888.350 kb on + strand, within B158DRAFT_0872at 888.363 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.393 kb on + strand, within B158DRAFT_0872at 888.395 kb on - strand, within B158DRAFT_0872at 888.401 kb on - strand, within B158DRAFT_0872at 888.429 kb on + strand, within B158DRAFT_0872at 888.429 kb on + strand, within B158DRAFT_0872at 888.504 kb on + strand, within B158DRAFT_0872at 888.523 kb on + strand, within B158DRAFT_0872at 888.531 kb on + strand, within B158DRAFT_0872at 888.540 kb on + strand, within B158DRAFT_0872at 888.562 kb on - strand, within B158DRAFT_0872at 888.562 kb on - strand, within B158DRAFT_0872at 888.562 kb on - strand, within B158DRAFT_0872at 888.680 kb on - strand, within B158DRAFT_0872at 888.681 kb on + strand, within B158DRAFT_0872at 888.703 kb on - strand, within B158DRAFT_0872at 888.734 kb on - strand, within B158DRAFT_0872at 888.776 kb on - strand, within B158DRAFT_0872at 888.797 kb on - strand, within B158DRAFT_0872at 888.810 kb on + strand, within B158DRAFT_0872at 889.018 kb on - strandat 889.063 kb on - strandat 889.068 kb on - strandat 889.265 kb on + strand, within B158DRAFT_0873at 889.282 kb on - strand, within B158DRAFT_0873at 889.313 kb on + strand, within B158DRAFT_0873at 889.321 kb on - strand, within B158DRAFT_0873at 889.321 kb on - strand, within B158DRAFT_0873at 889.321 kb on - strand, within B158DRAFT_0873at 889.401 kb on + strand, within B158DRAFT_0873at 889.475 kb on + strand, within B158DRAFT_0873at 889.483 kb on - strand, within B158DRAFT_0873at 889.483 kb on - strand, within B158DRAFT_0873at 889.483 kb on - strand, within B158DRAFT_0873at 889.530 kb on + strand, within B158DRAFT_0873at 889.530 kb on + strand, within B158DRAFT_0873at 889.538 kb on - strand, within B158DRAFT_0873at 889.538 kb on - strand, within B158DRAFT_0873at 889.538 kb on - strand, within B158DRAFT_0873at 889.559 kb on + strand, within B158DRAFT_0873at 889.559 kb on + strand, within B158DRAFT_0873at 889.780 kb on + strandat 889.793 kb on - strandat 889.793 kb on - strandat 889.798 kb on - strandat 889.831 kb on - strandat 889.835 kb on + strandat 889.845 kb on - strandat 889.884 kb on + strandat 889.884 kb on + strandat 889.892 kb on - strandat 889.892 kb on - strandat 889.892 kb on - strandat 889.911 kb on + strandat 889.919 kb on - strandat 889.926 kb on + strandat 890.310 kb on + strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.396 kb on - strand, within B158DRAFT_0875at 890.398 kb on - strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.406 kb on + strand, within B158DRAFT_0875at 890.414 kb on - strand, within B158DRAFT_0875at 890.414 kb on - strand, within B158DRAFT_0875at 890.424 kb on + strand, within B158DRAFT_0875at 890.424 kb on + strand, within B158DRAFT_0875at 890.424 kb on + strand, within B158DRAFT_0875at 890.432 kb on - strand, within B158DRAFT_0875at 890.446 kb on - strand, within B158DRAFT_0875at 890.446 kb on - strand, within B158DRAFT_0875at 890.547 kb on + strandat 890.552 kb on + strandat 890.555 kb on - strandat 890.706 kb on - strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.723 kb on + strandat 890.730 kb on + strandat 890.730 kb on + strandat 890.730 kb on + strandat 890.731 kb on - strandat 890.731 kb on - strandat 890.731 kb on - strandat 890.738 kb on - strandat 890.755 kb on + strand, within B158DRAFT_0876at 890.828 kb on + strand, within B158DRAFT_0876at 890.829 kb on - strand, within B158DRAFT_0876

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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888,002 - B158DRAFT_0871 0.33 -0.0
888,124 + B158DRAFT_0871 0.66 -0.1
888,155 - B158DRAFT_0871 0.74 -0.6
888,156 - B158DRAFT_0871 0.74 -0.2
888,184 - B158DRAFT_0871 0.82 -0.1
888,184 - B158DRAFT_0871 0.82 +0.4
888,199 + B158DRAFT_0871 0.86 -0.1
888,200 - B158DRAFT_0871 0.86 -0.1
888,207 - B158DRAFT_0871 0.88 -0.5
888,220 - -0.0
888,256 - -0.2
888,270 + +0.0
888,270 + -0.1
888,270 + -0.1
888,270 + -1.8
888,278 - +0.1
888,278 - -0.2
888,331 - -0.5
888,331 - -0.0
888,340 + B158DRAFT_0872 0.11 -0.3
888,340 + B158DRAFT_0872 0.11 -0.1
888,341 - B158DRAFT_0872 0.11 -0.0
888,348 - B158DRAFT_0872 0.12 -0.6
888,349 + B158DRAFT_0872 0.12 -1.4
888,349 + B158DRAFT_0872 0.12 -0.4
888,350 + B158DRAFT_0872 0.12 -0.0
888,363 + B158DRAFT_0872 0.15 -0.6
888,393 + B158DRAFT_0872 0.19 -0.2
888,393 + B158DRAFT_0872 0.19 +0.2
888,393 + B158DRAFT_0872 0.19 -0.0
888,393 + B158DRAFT_0872 0.19 -0.2
888,395 - B158DRAFT_0872 0.20 +0.2
888,401 - B158DRAFT_0872 0.21 -0.1
888,429 + B158DRAFT_0872 0.25 -0.2
888,429 + B158DRAFT_0872 0.25 -0.0
888,504 + B158DRAFT_0872 0.37 -0.1
888,523 + B158DRAFT_0872 0.40 +0.1
888,531 + B158DRAFT_0872 0.42 -0.3
888,540 + B158DRAFT_0872 0.43 -0.3
888,562 - B158DRAFT_0872 0.46 -0.6
888,562 - B158DRAFT_0872 0.46 -0.9
888,562 - B158DRAFT_0872 0.46 -0.1
888,680 - B158DRAFT_0872 0.65 -0.9
888,681 + B158DRAFT_0872 0.66 -0.0
888,703 - B158DRAFT_0872 0.69 +0.5
888,734 - B158DRAFT_0872 0.74 +0.1
888,776 - B158DRAFT_0872 0.81 -0.2
888,797 - B158DRAFT_0872 0.84 -2.1
888,810 + B158DRAFT_0872 0.86 -0.3
889,018 - +0.8
889,063 - +0.7
889,068 - +0.4
889,265 + B158DRAFT_0873 0.32 +0.5
889,282 - B158DRAFT_0873 0.34 +1.3
889,313 + B158DRAFT_0873 0.38 +0.7
889,321 - B158DRAFT_0873 0.39 +0.5
889,321 - B158DRAFT_0873 0.39 +0.8
889,321 - B158DRAFT_0873 0.39 +0.8
889,401 + B158DRAFT_0873 0.49 +0.5
889,475 + B158DRAFT_0873 0.57 +0.5
889,483 - B158DRAFT_0873 0.58 +1.0
889,483 - B158DRAFT_0873 0.58 +1.3
889,483 - B158DRAFT_0873 0.58 +0.7
889,530 + B158DRAFT_0873 0.64 +1.1
889,530 + B158DRAFT_0873 0.64 +1.8
889,538 - B158DRAFT_0873 0.65 +0.6
889,538 - B158DRAFT_0873 0.65 +0.8
889,538 - B158DRAFT_0873 0.65 +0.8
889,559 + B158DRAFT_0873 0.68 +0.8
889,559 + B158DRAFT_0873 0.68 +1.1
889,780 + +1.3
889,793 - +1.0
889,793 - +1.9
889,798 - +0.6
889,831 - -0.2
889,835 + -0.0
889,845 - -0.1
889,884 + -0.1
889,884 + -0.2
889,892 - +0.2
889,892 - -0.0
889,892 - -0.1
889,911 + -0.1
889,919 - -0.2
889,926 + -0.2
890,310 + B158DRAFT_0875 0.39 -0.3
890,396 - B158DRAFT_0875 0.66 -3.8
890,396 - B158DRAFT_0875 0.66 -1.5
890,396 - B158DRAFT_0875 0.66 -2.1
890,396 - B158DRAFT_0875 0.66 -0.8
890,396 - B158DRAFT_0875 0.66 -3.5
890,398 - B158DRAFT_0875 0.67 -2.6
890,406 + B158DRAFT_0875 0.70 -1.5
890,406 + B158DRAFT_0875 0.70 -3.9
890,406 + B158DRAFT_0875 0.70 -2.4
890,406 + B158DRAFT_0875 0.70 -3.5
890,414 - B158DRAFT_0875 0.72 -2.0
890,414 - B158DRAFT_0875 0.72 -2.6
890,424 + B158DRAFT_0875 0.75 -3.4
890,424 + B158DRAFT_0875 0.75 -2.7
890,424 + B158DRAFT_0875 0.75 -2.3
890,432 - B158DRAFT_0875 0.78 -2.6
890,446 - B158DRAFT_0875 0.82 -2.9
890,446 - B158DRAFT_0875 0.82 -1.4
890,547 + -2.4
890,552 + -2.2
890,555 - -2.3
890,706 - -1.4
890,723 + -1.9
890,723 + -1.7
890,723 + -1.4
890,723 + -1.2
890,723 + -1.7
890,723 + -0.4
890,730 + -1.7
890,730 + -2.1
890,730 + -1.4
890,731 - +0.7
890,731 - -1.9
890,731 - -1.9
890,738 - -0.6
890,755 + B158DRAFT_0876 0.11 -2.5
890,828 + B158DRAFT_0876 0.16 -0.7
890,829 - B158DRAFT_0876 0.16 -2.9

Or see this region's nucleotide sequence