Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0831

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0829 and B158DRAFT_0830 are separated by 13 nucleotidesB158DRAFT_0830 and B158DRAFT_0831 are separated by 18 nucleotidesB158DRAFT_0831 and B158DRAFT_0832 overlap by 4 nucleotidesB158DRAFT_0832 and B158DRAFT_0833 are separated by 359 nucleotides B158DRAFT_0829: B158DRAFT_0829 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase, at 840,338 to 840,835 _0829 B158DRAFT_0830: B158DRAFT_0830 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 840,849 to 841,565 _0830 B158DRAFT_0831: B158DRAFT_0831 - Uncharacterized conserved protein, at 841,584 to 842,798 _0831 B158DRAFT_0832: B158DRAFT_0832 - hypothetical protein, at 842,795 to 843,058 _0832 B158DRAFT_0833: B158DRAFT_0833 - undecaprenyl-diphosphatase UppP, at 843,418 to 844,242 _0833 Position (kb) 841 842 843Strain fitness (log2 ratio) -1 0 1 2at 840.653 kb on + strand, within B158DRAFT_0829at 840.672 kb on + strand, within B158DRAFT_0829at 840.683 kb on + strand, within B158DRAFT_0829at 840.683 kb on + strand, within B158DRAFT_0829at 840.690 kb on + strand, within B158DRAFT_0829at 840.690 kb on + strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.698 kb on - strand, within B158DRAFT_0829at 840.820 kb on - strandat 840.910 kb on + strandat 840.910 kb on + strandat 840.910 kb on + strandat 840.917 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.918 kb on - strandat 840.929 kb on + strand, within B158DRAFT_0830at 840.930 kb on + strand, within B158DRAFT_0830at 841.037 kb on + strand, within B158DRAFT_0830at 841.051 kb on + strand, within B158DRAFT_0830at 841.054 kb on + strand, within B158DRAFT_0830at 841.067 kb on + strand, within B158DRAFT_0830at 841.075 kb on - strand, within B158DRAFT_0830at 841.080 kb on + strand, within B158DRAFT_0830at 841.083 kb on - strand, within B158DRAFT_0830at 841.231 kb on - strand, within B158DRAFT_0830at 841.254 kb on + strand, within B158DRAFT_0830at 841.292 kb on + strand, within B158DRAFT_0830at 841.296 kb on - strand, within B158DRAFT_0830at 841.298 kb on - strand, within B158DRAFT_0830at 841.370 kb on + strand, within B158DRAFT_0830at 841.370 kb on + strand, within B158DRAFT_0830at 841.378 kb on - strand, within B158DRAFT_0830at 841.378 kb on - strand, within B158DRAFT_0830at 841.574 kb on - strandat 841.574 kb on - strandat 841.632 kb on + strandat 841.632 kb on + strandat 841.632 kb on + strandat 841.632 kb on + strandat 841.640 kb on - strandat 841.698 kb on + strandat 841.727 kb on + strand, within B158DRAFT_0831at 841.759 kb on + strand, within B158DRAFT_0831at 841.767 kb on - strand, within B158DRAFT_0831at 841.774 kb on + strand, within B158DRAFT_0831at 841.777 kb on - strand, within B158DRAFT_0831at 841.782 kb on - strand, within B158DRAFT_0831at 841.782 kb on - strand, within B158DRAFT_0831at 841.821 kb on + strand, within B158DRAFT_0831at 841.821 kb on + strand, within B158DRAFT_0831at 841.842 kb on + strand, within B158DRAFT_0831at 841.848 kb on - strand, within B158DRAFT_0831at 841.894 kb on + strand, within B158DRAFT_0831at 841.904 kb on + strand, within B158DRAFT_0831at 841.911 kb on + strand, within B158DRAFT_0831at 841.977 kb on + strand, within B158DRAFT_0831at 841.985 kb on - strand, within B158DRAFT_0831at 841.985 kb on - strand, within B158DRAFT_0831at 842.038 kb on + strand, within B158DRAFT_0831at 842.051 kb on - strand, within B158DRAFT_0831at 842.068 kb on - strand, within B158DRAFT_0831at 842.070 kb on + strand, within B158DRAFT_0831at 842.078 kb on - strand, within B158DRAFT_0831at 842.100 kb on - strand, within B158DRAFT_0831at 842.122 kb on - strand, within B158DRAFT_0831at 842.122 kb on - strand, within B158DRAFT_0831at 842.122 kb on - strand, within B158DRAFT_0831at 842.144 kb on + strand, within B158DRAFT_0831at 842.212 kb on - strand, within B158DRAFT_0831at 842.216 kb on - strand, within B158DRAFT_0831at 842.217 kb on - strand, within B158DRAFT_0831at 842.332 kb on + strand, within B158DRAFT_0831at 842.340 kb on - strand, within B158DRAFT_0831at 842.340 kb on - strand, within B158DRAFT_0831at 842.365 kb on - strand, within B158DRAFT_0831at 842.384 kb on - strand, within B158DRAFT_0831at 842.385 kb on + strand, within B158DRAFT_0831at 842.390 kb on + strand, within B158DRAFT_0831at 842.395 kb on + strand, within B158DRAFT_0831at 842.398 kb on - strand, within B158DRAFT_0831at 842.400 kb on + strand, within B158DRAFT_0831at 842.403 kb on - strand, within B158DRAFT_0831at 842.403 kb on - strand, within B158DRAFT_0831at 842.403 kb on - strand, within B158DRAFT_0831at 842.431 kb on + strand, within B158DRAFT_0831at 842.443 kb on + strand, within B158DRAFT_0831at 842.446 kb on + strand, within B158DRAFT_0831at 842.446 kb on + strand, within B158DRAFT_0831at 842.449 kb on - strand, within B158DRAFT_0831at 842.449 kb on - strand, within B158DRAFT_0831at 842.451 kb on - strand, within B158DRAFT_0831at 842.451 kb on - strand, within B158DRAFT_0831at 842.451 kb on - strand, within B158DRAFT_0831at 842.454 kb on - strand, within B158DRAFT_0831at 842.463 kb on + strand, within B158DRAFT_0831at 842.463 kb on + strand, within B158DRAFT_0831at 842.464 kb on - strand, within B158DRAFT_0831at 842.471 kb on - strand, within B158DRAFT_0831at 842.473 kb on - strand, within B158DRAFT_0831at 842.569 kb on + strand, within B158DRAFT_0831at 842.569 kb on + strand, within B158DRAFT_0831at 842.577 kb on - strand, within B158DRAFT_0831at 842.610 kb on - strand, within B158DRAFT_0831at 842.610 kb on - strand, within B158DRAFT_0831at 842.617 kb on + strand, within B158DRAFT_0831at 842.625 kb on - strand, within B158DRAFT_0831at 842.636 kb on + strand, within B158DRAFT_0831at 842.636 kb on + strand, within B158DRAFT_0831at 842.644 kb on - strand, within B158DRAFT_0831at 842.695 kb on + strandat 842.695 kb on + strandat 842.724 kb on + strandat 842.764 kb on + strandat 842.828 kb on + strand, within B158DRAFT_0832at 842.903 kb on + strand, within B158DRAFT_0832at 842.903 kb on + strand, within B158DRAFT_0832at 843.044 kb on + strandat 843.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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840,653 + B158DRAFT_0829 0.63 +0.1
840,672 + B158DRAFT_0829 0.67 +0.1
840,683 + B158DRAFT_0829 0.69 -0.3
840,683 + B158DRAFT_0829 0.69 -0.2
840,690 + B158DRAFT_0829 0.71 -0.3
840,690 + B158DRAFT_0829 0.71 -0.4
840,698 - B158DRAFT_0829 0.72 +0.7
840,698 - B158DRAFT_0829 0.72 +1.2
840,698 - B158DRAFT_0829 0.72 +0.3
840,820 - +0.0
840,910 + -0.0
840,910 + +0.1
840,910 + -0.9
840,917 - +0.5
840,918 - +0.5
840,918 - +0.4
840,918 - +0.5
840,918 - +0.6
840,918 - +0.5
840,918 - +0.4
840,929 + B158DRAFT_0830 0.11 -0.2
840,930 + B158DRAFT_0830 0.11 -0.3
841,037 + B158DRAFT_0830 0.26 -0.4
841,051 + B158DRAFT_0830 0.28 +0.2
841,054 + B158DRAFT_0830 0.29 -0.4
841,067 + B158DRAFT_0830 0.30 -0.5
841,075 - B158DRAFT_0830 0.32 +0.7
841,080 + B158DRAFT_0830 0.32 -0.3
841,083 - B158DRAFT_0830 0.33 +0.3
841,231 - B158DRAFT_0830 0.53 +0.1
841,254 + B158DRAFT_0830 0.56 -0.4
841,292 + B158DRAFT_0830 0.62 +0.1
841,296 - B158DRAFT_0830 0.62 +0.0
841,298 - B158DRAFT_0830 0.63 +0.5
841,370 + B158DRAFT_0830 0.73 -0.8
841,370 + B158DRAFT_0830 0.73 +0.1
841,378 - B158DRAFT_0830 0.74 -0.0
841,378 - B158DRAFT_0830 0.74 +0.4
841,574 - +0.9
841,574 - +1.0
841,632 + +1.1
841,632 + +1.2
841,632 + +1.3
841,632 + +1.0
841,640 - +1.1
841,698 + +1.2
841,727 + B158DRAFT_0831 0.12 +1.3
841,759 + B158DRAFT_0831 0.14 +0.6
841,767 - B158DRAFT_0831 0.15 +0.7
841,774 + B158DRAFT_0831 0.16 +1.0
841,777 - B158DRAFT_0831 0.16 +1.2
841,782 - B158DRAFT_0831 0.16 +0.6
841,782 - B158DRAFT_0831 0.16 +1.1
841,821 + B158DRAFT_0831 0.20 +1.2
841,821 + B158DRAFT_0831 0.20 +0.9
841,842 + B158DRAFT_0831 0.21 +0.9
841,848 - B158DRAFT_0831 0.22 +1.1
841,894 + B158DRAFT_0831 0.26 +0.9
841,904 + B158DRAFT_0831 0.26 +1.4
841,911 + B158DRAFT_0831 0.27 +1.0
841,977 + B158DRAFT_0831 0.32 +1.3
841,985 - B158DRAFT_0831 0.33 +1.2
841,985 - B158DRAFT_0831 0.33 +1.3
842,038 + B158DRAFT_0831 0.37 +0.6
842,051 - B158DRAFT_0831 0.38 +0.8
842,068 - B158DRAFT_0831 0.40 +1.1
842,070 + B158DRAFT_0831 0.40 +1.0
842,078 - B158DRAFT_0831 0.41 +1.2
842,100 - B158DRAFT_0831 0.42 +0.9
842,122 - B158DRAFT_0831 0.44 +1.0
842,122 - B158DRAFT_0831 0.44 +0.9
842,122 - B158DRAFT_0831 0.44 +0.9
842,144 + B158DRAFT_0831 0.46 +0.8
842,212 - B158DRAFT_0831 0.52 +1.1
842,216 - B158DRAFT_0831 0.52 +1.6
842,217 - B158DRAFT_0831 0.52 +1.0
842,332 + B158DRAFT_0831 0.62 +1.2
842,340 - B158DRAFT_0831 0.62 +0.5
842,340 - B158DRAFT_0831 0.62 +2.3
842,365 - B158DRAFT_0831 0.64 +0.8
842,384 - B158DRAFT_0831 0.66 +1.5
842,385 + B158DRAFT_0831 0.66 +0.8
842,390 + B158DRAFT_0831 0.66 +1.3
842,395 + B158DRAFT_0831 0.67 +0.9
842,398 - B158DRAFT_0831 0.67 +1.4
842,400 + B158DRAFT_0831 0.67 +1.0
842,403 - B158DRAFT_0831 0.67 +0.9
842,403 - B158DRAFT_0831 0.67 +1.3
842,403 - B158DRAFT_0831 0.67 +1.0
842,431 + B158DRAFT_0831 0.70 +1.1
842,443 + B158DRAFT_0831 0.71 +0.8
842,446 + B158DRAFT_0831 0.71 +0.9
842,446 + B158DRAFT_0831 0.71 +1.2
842,449 - B158DRAFT_0831 0.71 +1.1
842,449 - B158DRAFT_0831 0.71 +1.3
842,451 - B158DRAFT_0831 0.71 +1.8
842,451 - B158DRAFT_0831 0.71 +1.1
842,451 - B158DRAFT_0831 0.71 +1.1
842,454 - B158DRAFT_0831 0.72 +1.0
842,463 + B158DRAFT_0831 0.72 +1.1
842,463 + B158DRAFT_0831 0.72 +1.1
842,464 - B158DRAFT_0831 0.72 +1.2
842,471 - B158DRAFT_0831 0.73 +1.3
842,473 - B158DRAFT_0831 0.73 +0.7
842,569 + B158DRAFT_0831 0.81 +0.8
842,569 + B158DRAFT_0831 0.81 +1.1
842,577 - B158DRAFT_0831 0.82 +1.4
842,610 - B158DRAFT_0831 0.84 +1.0
842,610 - B158DRAFT_0831 0.84 +1.2
842,617 + B158DRAFT_0831 0.85 +1.3
842,625 - B158DRAFT_0831 0.86 +1.3
842,636 + B158DRAFT_0831 0.87 +1.6
842,636 + B158DRAFT_0831 0.87 +1.5
842,644 - B158DRAFT_0831 0.87 +1.2
842,695 + +1.4
842,695 + +1.1
842,724 + +1.0
842,764 + +0.7
842,828 + B158DRAFT_0832 0.12 +1.0
842,903 + B158DRAFT_0832 0.41 +1.0
842,903 + B158DRAFT_0832 0.41 -0.5
843,044 + -0.3
843,342 + +0.0

Or see this region's nucleotide sequence