Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0684

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0683 and B158DRAFT_0684 are separated by 216 nucleotidesB158DRAFT_0684 and B158DRAFT_0685 are separated by 50 nucleotides B158DRAFT_0683: B158DRAFT_0683 - Transcriptional accessory protein, at 683,240 to 685,561 _0683 B158DRAFT_0684: B158DRAFT_0684 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 685,778 to 686,500 _0684 B158DRAFT_0685: B158DRAFT_0685 - Signal transduction histidine kinase, at 686,551 to 687,855 _0685 Position (kb) 685 686 687Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 684.823 kb on - strand, within B158DRAFT_0683at 684.824 kb on - strand, within B158DRAFT_0683at 684.926 kb on - strand, within B158DRAFT_0683at 684.927 kb on + strand, within B158DRAFT_0683at 684.935 kb on - strand, within B158DRAFT_0683at 684.937 kb on + strand, within B158DRAFT_0683at 684.964 kb on - strand, within B158DRAFT_0683at 684.980 kb on - strand, within B158DRAFT_0683at 684.980 kb on - strand, within B158DRAFT_0683at 685.011 kb on + strand, within B158DRAFT_0683at 685.245 kb on - strand, within B158DRAFT_0683at 685.255 kb on + strand, within B158DRAFT_0683at 685.275 kb on + strand, within B158DRAFT_0683at 685.283 kb on - strand, within B158DRAFT_0683at 685.283 kb on - strand, within B158DRAFT_0683at 685.302 kb on + strand, within B158DRAFT_0683at 685.317 kb on - strand, within B158DRAFT_0683at 685.333 kb on + strandat 685.341 kb on - strandat 685.341 kb on - strandat 685.356 kb on - strandat 685.374 kb on - strandat 685.411 kb on + strandat 685.416 kb on + strandat 685.424 kb on - strandat 685.462 kb on + strandat 685.475 kb on + strandat 685.500 kb on + strandat 685.508 kb on - strandat 685.522 kb on + strandat 685.522 kb on + strandat 685.537 kb on - strandat 685.537 kb on - strandat 685.599 kb on + strandat 685.646 kb on + strandat 685.646 kb on + strandat 685.646 kb on + strandat 685.646 kb on + strandat 685.646 kb on + strandat 685.649 kb on - strandat 685.654 kb on - strandat 685.657 kb on + strandat 685.665 kb on - strandat 685.665 kb on - strandat 685.841 kb on - strandat 685.856 kb on + strand, within B158DRAFT_0684at 685.905 kb on + strand, within B158DRAFT_0684at 686.042 kb on + strand, within B158DRAFT_0684at 686.061 kb on + strand, within B158DRAFT_0684at 686.073 kb on + strand, within B158DRAFT_0684at 686.089 kb on + strand, within B158DRAFT_0684at 686.097 kb on - strand, within B158DRAFT_0684at 686.133 kb on - strand, within B158DRAFT_0684at 686.135 kb on + strand, within B158DRAFT_0684at 686.135 kb on + strand, within B158DRAFT_0684at 686.157 kb on - strand, within B158DRAFT_0684at 686.189 kb on + strand, within B158DRAFT_0684at 686.189 kb on + strand, within B158DRAFT_0684at 686.197 kb on - strand, within B158DRAFT_0684at 686.213 kb on - strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.284 kb on + strand, within B158DRAFT_0684at 686.292 kb on - strand, within B158DRAFT_0684at 686.292 kb on - strand, within B158DRAFT_0684at 686.292 kb on - strand, within B158DRAFT_0684at 686.292 kb on - strand, within B158DRAFT_0684at 686.292 kb on - strand, within B158DRAFT_0684at 686.292 kb on - strand, within B158DRAFT_0684at 686.312 kb on - strand, within B158DRAFT_0684at 686.361 kb on + strand, within B158DRAFT_0684at 686.369 kb on - strand, within B158DRAFT_0684at 686.379 kb on + strand, within B158DRAFT_0684at 686.379 kb on + strand, within B158DRAFT_0684at 686.379 kb on + strand, within B158DRAFT_0684at 686.400 kb on - strand, within B158DRAFT_0684at 686.413 kb on + strand, within B158DRAFT_0684at 686.452 kb on + strandat 686.452 kb on + strandat 686.461 kb on - strandat 686.494 kb on + strandat 686.494 kb on + strandat 686.494 kb on + strandat 686.494 kb on + strandat 686.499 kb on + strandat 686.502 kb on - strandat 686.502 kb on - strandat 686.502 kb on - strandat 686.510 kb on - strandat 686.585 kb on + strandat 686.585 kb on + strandat 686.683 kb on + strand, within B158DRAFT_0685at 686.805 kb on + strand, within B158DRAFT_0685at 686.810 kb on + strand, within B158DRAFT_0685at 686.824 kb on - strand, within B158DRAFT_0685at 686.841 kb on + strand, within B158DRAFT_0685at 686.841 kb on + strand, within B158DRAFT_0685at 686.841 kb on + strand, within B158DRAFT_0685at 686.841 kb on + strand, within B158DRAFT_0685at 686.843 kb on + strand, within B158DRAFT_0685at 686.849 kb on - strand, within B158DRAFT_0685at 686.849 kb on - strand, within B158DRAFT_0685at 686.849 kb on - strand, within B158DRAFT_0685at 686.849 kb on - strand, within B158DRAFT_0685at 686.849 kb on - strand, within B158DRAFT_0685at 686.849 kb on - strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.876 kb on + strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.884 kb on - strand, within B158DRAFT_0685at 686.896 kb on - strand, within B158DRAFT_0685at 686.990 kb on + strand, within B158DRAFT_0685at 687.087 kb on - strand, within B158DRAFT_0685at 687.184 kb on - strand, within B158DRAFT_0685at 687.194 kb on + strand, within B158DRAFT_0685at 687.224 kb on + strand, within B158DRAFT_0685at 687.232 kb on - strand, within B158DRAFT_0685at 687.280 kb on + strand, within B158DRAFT_0685at 687.288 kb on - strand, within B158DRAFT_0685at 687.288 kb on - strand, within B158DRAFT_0685at 687.295 kb on - strand, within B158DRAFT_0685at 687.325 kb on + strand, within B158DRAFT_0685at 687.339 kb on - strand, within B158DRAFT_0685at 687.343 kb on + strand, within B158DRAFT_0685at 687.387 kb on + strand, within B158DRAFT_0685at 687.472 kb on + strand, within B158DRAFT_0685at 687.492 kb on + strand, within B158DRAFT_0685at 687.497 kb on + strand, within B158DRAFT_0685

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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684,823 - B158DRAFT_0683 0.68 -0.1
684,824 - B158DRAFT_0683 0.68 +0.4
684,926 - B158DRAFT_0683 0.73 -1.5
684,927 + B158DRAFT_0683 0.73 -1.1
684,935 - B158DRAFT_0683 0.73 -0.8
684,937 + B158DRAFT_0683 0.73 -1.5
684,964 - B158DRAFT_0683 0.74 -1.6
684,980 - B158DRAFT_0683 0.75 -1.6
684,980 - B158DRAFT_0683 0.75 -1.0
685,011 + B158DRAFT_0683 0.76 -0.8
685,245 - B158DRAFT_0683 0.86 -1.3
685,255 + B158DRAFT_0683 0.87 -1.5
685,275 + B158DRAFT_0683 0.88 -1.5
685,283 - B158DRAFT_0683 0.88 -1.4
685,283 - B158DRAFT_0683 0.88 -1.5
685,302 + B158DRAFT_0683 0.89 -0.2
685,317 - B158DRAFT_0683 0.89 -1.1
685,333 + -1.1
685,341 - -1.4
685,341 - -0.8
685,356 - -1.6
685,374 - -1.4
685,411 + -1.4
685,416 + -0.7
685,424 - -1.2
685,462 + -1.3
685,475 + -1.3
685,500 + -1.3
685,508 - -0.9
685,522 + -1.1
685,522 + -1.0
685,537 - -1.0
685,537 - -1.0
685,599 + -1.1
685,646 + -1.2
685,646 + -0.6
685,646 + -0.4
685,646 + -0.5
685,646 + -0.9
685,649 - -1.4
685,654 - -1.1
685,657 + -1.0
685,665 - -2.0
685,665 - -1.9
685,841 - -2.7
685,856 + B158DRAFT_0684 0.11 -3.6
685,905 + B158DRAFT_0684 0.18 -3.3
686,042 + B158DRAFT_0684 0.37 -3.8
686,061 + B158DRAFT_0684 0.39 -2.1
686,073 + B158DRAFT_0684 0.41 -3.0
686,089 + B158DRAFT_0684 0.43 -4.2
686,097 - B158DRAFT_0684 0.44 -4.1
686,133 - B158DRAFT_0684 0.49 -3.4
686,135 + B158DRAFT_0684 0.49 -3.5
686,135 + B158DRAFT_0684 0.49 -2.7
686,157 - B158DRAFT_0684 0.52 -3.6
686,189 + B158DRAFT_0684 0.57 -3.7
686,189 + B158DRAFT_0684 0.57 -3.2
686,197 - B158DRAFT_0684 0.58 -1.8
686,213 - B158DRAFT_0684 0.60 -2.5
686,284 + B158DRAFT_0684 0.70 -2.8
686,284 + B158DRAFT_0684 0.70 -2.0
686,284 + B158DRAFT_0684 0.70 -3.0
686,284 + B158DRAFT_0684 0.70 -3.0
686,284 + B158DRAFT_0684 0.70 -2.1
686,284 + B158DRAFT_0684 0.70 -3.5
686,284 + B158DRAFT_0684 0.70 -2.7
686,284 + B158DRAFT_0684 0.70 -2.7
686,292 - B158DRAFT_0684 0.71 -0.8
686,292 - B158DRAFT_0684 0.71 -3.1
686,292 - B158DRAFT_0684 0.71 -3.4
686,292 - B158DRAFT_0684 0.71 -2.1
686,292 - B158DRAFT_0684 0.71 -4.3
686,292 - B158DRAFT_0684 0.71 -2.7
686,312 - B158DRAFT_0684 0.74 -2.2
686,361 + B158DRAFT_0684 0.81 -2.8
686,369 - B158DRAFT_0684 0.82 -3.3
686,379 + B158DRAFT_0684 0.83 -3.5
686,379 + B158DRAFT_0684 0.83 -3.1
686,379 + B158DRAFT_0684 0.83 -3.8
686,400 - B158DRAFT_0684 0.86 -2.1
686,413 + B158DRAFT_0684 0.88 -2.8
686,452 + -2.9
686,452 + -1.8
686,461 - -1.4
686,494 + +0.3
686,494 + +1.0
686,494 + -1.1
686,494 + +0.5
686,499 + +0.2
686,502 - -1.2
686,502 - -1.4
686,502 - -1.5
686,510 - -1.9
686,585 + -3.2
686,585 + -2.1
686,683 + B158DRAFT_0685 0.10 -3.0
686,805 + B158DRAFT_0685 0.19 -2.3
686,810 + B158DRAFT_0685 0.20 -2.6
686,824 - B158DRAFT_0685 0.21 -3.7
686,841 + B158DRAFT_0685 0.22 -2.5
686,841 + B158DRAFT_0685 0.22 -2.8
686,841 + B158DRAFT_0685 0.22 -3.4
686,841 + B158DRAFT_0685 0.22 -2.2
686,843 + B158DRAFT_0685 0.22 -2.9
686,849 - B158DRAFT_0685 0.23 -2.4
686,849 - B158DRAFT_0685 0.23 -2.8
686,849 - B158DRAFT_0685 0.23 -3.2
686,849 - B158DRAFT_0685 0.23 -2.6
686,849 - B158DRAFT_0685 0.23 -2.8
686,849 - B158DRAFT_0685 0.23 -3.7
686,876 + B158DRAFT_0685 0.25 -3.0
686,876 + B158DRAFT_0685 0.25 -3.7
686,876 + B158DRAFT_0685 0.25 -2.6
686,876 + B158DRAFT_0685 0.25 -1.1
686,876 + B158DRAFT_0685 0.25 -2.2
686,876 + B158DRAFT_0685 0.25 -2.4
686,876 + B158DRAFT_0685 0.25 -3.0
686,876 + B158DRAFT_0685 0.25 -3.0
686,876 + B158DRAFT_0685 0.25 -3.3
686,876 + B158DRAFT_0685 0.25 -2.1
686,876 + B158DRAFT_0685 0.25 -3.8
686,884 - B158DRAFT_0685 0.26 -4.1
686,884 - B158DRAFT_0685 0.26 -3.6
686,884 - B158DRAFT_0685 0.26 -2.9
686,884 - B158DRAFT_0685 0.26 -3.9
686,884 - B158DRAFT_0685 0.26 -1.9
686,884 - B158DRAFT_0685 0.26 -3.0
686,884 - B158DRAFT_0685 0.26 -3.9
686,884 - B158DRAFT_0685 0.26 -2.5
686,884 - B158DRAFT_0685 0.26 -2.0
686,884 - B158DRAFT_0685 0.26 -3.9
686,896 - B158DRAFT_0685 0.26 -3.1
686,990 + B158DRAFT_0685 0.34 -3.0
687,087 - B158DRAFT_0685 0.41 -3.3
687,184 - B158DRAFT_0685 0.49 -1.6
687,194 + B158DRAFT_0685 0.49 -2.7
687,224 + B158DRAFT_0685 0.52 -4.1
687,232 - B158DRAFT_0685 0.52 -2.9
687,280 + B158DRAFT_0685 0.56 -5.8
687,288 - B158DRAFT_0685 0.56 -2.0
687,288 - B158DRAFT_0685 0.56 -3.1
687,295 - B158DRAFT_0685 0.57 -2.9
687,325 + B158DRAFT_0685 0.59 -3.3
687,339 - B158DRAFT_0685 0.60 -3.3
687,343 + B158DRAFT_0685 0.61 -0.1
687,387 + B158DRAFT_0685 0.64 -3.1
687,472 + B158DRAFT_0685 0.71 -2.8
687,492 + B158DRAFT_0685 0.72 -3.9
687,497 + B158DRAFT_0685 0.72 -3.2

Or see this region's nucleotide sequence