Experiment: m.b. Rifampicin 0.0004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt B158DRAFT_0676 and B158DRAFT_0677 are separated by 124 nucleotides B158DRAFT_0677 and B158DRAFT_0678 are separated by 29 nucleotides B158DRAFT_0678 and B158DRAFT_0679 are separated by 67 nucleotides
B158DRAFT_0676: B158DRAFT_0676 - Lauroyl/myristoyl acyltransferase, at 678,299 to 679,789
_0676
B158DRAFT_0677: B158DRAFT_0677 - Uncharacterized small membrane protein, at 679,914 to 680,294
_0677
B158DRAFT_0678: B158DRAFT_0678 - TIGR02444 family protein, at 680,324 to 680,830
_0678
B158DRAFT_0679: B158DRAFT_0679 - FKBP-type peptidyl-prolyl cis-trans isomerases 1, at 680,898 to 681,845
_0679
Position (kb) 679
680
681 Strain fitness (log2 ratio) -1
0
1
2
3 at 678.944 kb on - strand, within B158DRAFT_0676 at 678.957 kb on + strand, within B158DRAFT_0676 at 678.965 kb on - strand, within B158DRAFT_0676 at 678.965 kb on - strand, within B158DRAFT_0676 at 678.965 kb on - strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.967 kb on + strand, within B158DRAFT_0676 at 678.975 kb on - strand, within B158DRAFT_0676 at 678.975 kb on - strand, within B158DRAFT_0676 at 679.031 kb on - strand, within B158DRAFT_0676 at 679.052 kb on + strand, within B158DRAFT_0676 at 679.060 kb on - strand, within B158DRAFT_0676 at 679.078 kb on - strand, within B158DRAFT_0676 at 679.108 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.116 kb on + strand, within B158DRAFT_0676 at 679.124 kb on - strand, within B158DRAFT_0676 at 679.138 kb on + strand, within B158DRAFT_0676 at 679.156 kb on - strand, within B158DRAFT_0676 at 679.226 kb on - strand, within B158DRAFT_0676 at 679.291 kb on + strand, within B158DRAFT_0676 at 679.315 kb on + strand, within B158DRAFT_0676 at 679.320 kb on + strand, within B158DRAFT_0676 at 679.320 kb on + strand, within B158DRAFT_0676 at 679.366 kb on + strand, within B158DRAFT_0676 at 679.366 kb on + strand, within B158DRAFT_0676 at 679.366 kb on + strand, within B158DRAFT_0676 at 679.407 kb on - strand, within B158DRAFT_0676 at 679.407 kb on - strand, within B158DRAFT_0676 at 679.412 kb on - strand, within B158DRAFT_0676 at 679.468 kb on + strand, within B158DRAFT_0676 at 679.512 kb on + strand, within B158DRAFT_0676 at 679.512 kb on + strand, within B158DRAFT_0676 at 679.521 kb on - strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.523 kb on + strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.531 kb on - strand, within B158DRAFT_0676 at 679.545 kb on + strand, within B158DRAFT_0676 at 679.581 kb on + strand, within B158DRAFT_0676 at 679.588 kb on + strand, within B158DRAFT_0676 at 679.588 kb on + strand, within B158DRAFT_0676 at 679.593 kb on + strand, within B158DRAFT_0676 at 679.593 kb on + strand, within B158DRAFT_0676 at 679.593 kb on + strand, within B158DRAFT_0676 at 679.596 kb on - strand, within B158DRAFT_0676 at 679.601 kb on - strand, within B158DRAFT_0676 at 679.636 kb on + strand, within B158DRAFT_0676 at 679.657 kb on - strand at 679.673 kb on + strand at 679.699 kb on - strand at 679.709 kb on + strand at 679.714 kb on + strand at 679.883 kb on + strand at 679.884 kb on - strand at 679.891 kb on - strand at 679.893 kb on + strand at 679.946 kb on + strand at 679.960 kb on + strand, within B158DRAFT_0677 at 679.965 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.990 kb on + strand, within B158DRAFT_0677 at 679.998 kb on - strand, within B158DRAFT_0677 at 680.011 kb on + strand, within B158DRAFT_0677 at 680.110 kb on - strand, within B158DRAFT_0677 at 680.110 kb on - strand, within B158DRAFT_0677 at 680.110 kb on - strand, within B158DRAFT_0677 at 680.163 kb on - strand, within B158DRAFT_0677 at 680.255 kb on - strand, within B158DRAFT_0677 at 680.255 kb on - strand, within B158DRAFT_0677 at 680.262 kb on + strand at 680.262 kb on + strand at 680.262 kb on + strand at 680.270 kb on - strand at 680.270 kb on - strand at 680.283 kb on - strand at 680.283 kb on - strand at 680.323 kb on - strand at 680.377 kb on - strand, within B158DRAFT_0678 at 680.409 kb on - strand, within B158DRAFT_0678 at 680.409 kb on - strand, within B158DRAFT_0678 at 680.423 kb on + strand, within B158DRAFT_0678 at 680.423 kb on + strand, within B158DRAFT_0678 at 680.441 kb on - strand, within B158DRAFT_0678 at 680.480 kb on - strand, within B158DRAFT_0678 at 680.480 kb on - strand, within B158DRAFT_0678 at 680.480 kb on - strand, within B158DRAFT_0678 at 680.488 kb on - strand, within B158DRAFT_0678 at 680.488 kb on - strand, within B158DRAFT_0678 at 680.531 kb on + strand, within B158DRAFT_0678 at 680.539 kb on - strand, within B158DRAFT_0678 at 680.539 kb on - strand, within B158DRAFT_0678 at 680.566 kb on - strand, within B158DRAFT_0678 at 680.666 kb on + strand, within B158DRAFT_0678 at 680.666 kb on + strand, within B158DRAFT_0678 at 680.666 kb on + strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.674 kb on - strand, within B158DRAFT_0678 at 680.770 kb on + strand, within B158DRAFT_0678 at 680.771 kb on + strand, within B158DRAFT_0678 at 680.777 kb on + strand, within B158DRAFT_0678 at 680.800 kb on + strand at 680.803 kb on - strand at 680.818 kb on - strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.824 kb on + strand at 680.832 kb on - strand at 680.832 kb on - strand at 680.832 kb on - strand at 680.832 kb on - strand at 680.832 kb on - strand at 680.851 kb on + strand at 680.921 kb on - strand at 680.944 kb on + strand at 680.944 kb on + strand at 680.947 kb on - strand at 680.952 kb on - strand at 680.959 kb on + strand at 680.998 kb on + strand, within B158DRAFT_0679 at 680.998 kb on + strand, within B158DRAFT_0679 at 681.006 kb on - strand, within B158DRAFT_0679 at 681.032 kb on - strand, within B158DRAFT_0679 at 681.094 kb on + strand, within B158DRAFT_0679 at 681.094 kb on + strand, within B158DRAFT_0679 at 681.134 kb on + strand, within B158DRAFT_0679 at 681.200 kb on + strand, within B158DRAFT_0679 at 681.210 kb on + strand, within B158DRAFT_0679 at 681.251 kb on - strand, within B158DRAFT_0679
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml remove 678,944 - B158DRAFT_0676 0.43 +3.3 678,957 + B158DRAFT_0676 0.44 +2.5 678,965 - B158DRAFT_0676 0.45 +2.4 678,965 - B158DRAFT_0676 0.45 +1.6 678,965 - B158DRAFT_0676 0.45 +2.4 678,967 + B158DRAFT_0676 0.45 +2.2 678,967 + B158DRAFT_0676 0.45 +2.1 678,967 + B158DRAFT_0676 0.45 +2.1 678,967 + B158DRAFT_0676 0.45 +2.2 678,975 - B158DRAFT_0676 0.45 +1.9 678,975 - B158DRAFT_0676 0.45 +2.5 679,031 - B158DRAFT_0676 0.49 +2.6 679,052 + B158DRAFT_0676 0.51 +1.7 679,060 - B158DRAFT_0676 0.51 +2.3 679,078 - B158DRAFT_0676 0.52 +2.3 679,108 + B158DRAFT_0676 0.54 +2.6 679,116 + B158DRAFT_0676 0.55 +2.2 679,116 + B158DRAFT_0676 0.55 +2.2 679,116 + B158DRAFT_0676 0.55 +2.3 679,116 + B158DRAFT_0676 0.55 +2.5 679,124 - B158DRAFT_0676 0.55 +2.6 679,138 + B158DRAFT_0676 0.56 +2.2 679,156 - B158DRAFT_0676 0.57 +2.2 679,226 - B158DRAFT_0676 0.62 +1.7 679,291 + B158DRAFT_0676 0.67 +2.4 679,315 + B158DRAFT_0676 0.68 +1.3 679,320 + B158DRAFT_0676 0.68 +2.3 679,320 + B158DRAFT_0676 0.68 +2.0 679,366 + B158DRAFT_0676 0.72 +2.2 679,366 + B158DRAFT_0676 0.72 +2.5 679,366 + B158DRAFT_0676 0.72 +2.7 679,407 - B158DRAFT_0676 0.74 +2.7 679,407 - B158DRAFT_0676 0.74 +2.3 679,412 - B158DRAFT_0676 0.75 +2.5 679,468 + B158DRAFT_0676 0.78 +2.0 679,512 + B158DRAFT_0676 0.81 +1.9 679,512 + B158DRAFT_0676 0.81 +0.8 679,521 - B158DRAFT_0676 0.82 +2.0 679,523 + B158DRAFT_0676 0.82 +2.2 679,523 + B158DRAFT_0676 0.82 +2.4 679,523 + B158DRAFT_0676 0.82 +2.3 679,523 + B158DRAFT_0676 0.82 +2.3 679,531 - B158DRAFT_0676 0.83 +1.3 679,531 - B158DRAFT_0676 0.83 +2.6 679,531 - B158DRAFT_0676 0.83 +2.2 679,531 - B158DRAFT_0676 0.83 +2.2 679,531 - B158DRAFT_0676 0.83 +1.7 679,531 - B158DRAFT_0676 0.83 +2.8 679,531 - B158DRAFT_0676 0.83 +2.6 679,531 - B158DRAFT_0676 0.83 +2.0 679,545 + B158DRAFT_0676 0.84 +2.2 679,581 + B158DRAFT_0676 0.86 +1.8 679,588 + B158DRAFT_0676 0.86 +2.2 679,588 + B158DRAFT_0676 0.86 +2.2 679,593 + B158DRAFT_0676 0.87 +2.3 679,593 + B158DRAFT_0676 0.87 +2.7 679,593 + B158DRAFT_0676 0.87 +2.7 679,596 - B158DRAFT_0676 0.87 +1.8 679,601 - B158DRAFT_0676 0.87 +2.4 679,636 + B158DRAFT_0676 0.90 +2.2 679,657 - +1.9 679,673 + +2.6 679,699 - +1.9 679,709 + +2.2 679,714 + +2.5 679,883 + -0.1 679,884 - -0.5 679,891 - +0.2 679,893 + +0.3 679,946 + -0.1 679,960 + B158DRAFT_0677 0.12 +0.2 679,965 + B158DRAFT_0677 0.13 +0.2 679,990 + B158DRAFT_0677 0.20 +0.7 679,990 + B158DRAFT_0677 0.20 -0.0 679,990 + B158DRAFT_0677 0.20 -0.5 679,990 + B158DRAFT_0677 0.20 -0.6 679,998 - B158DRAFT_0677 0.22 +0.0 680,011 + B158DRAFT_0677 0.25 -0.1 680,110 - B158DRAFT_0677 0.51 +0.3 680,110 - B158DRAFT_0677 0.51 +0.8 680,110 - B158DRAFT_0677 0.51 -0.5 680,163 - B158DRAFT_0677 0.65 -0.2 680,255 - B158DRAFT_0677 0.90 -0.4 680,255 - B158DRAFT_0677 0.90 -0.4 680,262 + -0.3 680,262 + +0.1 680,262 + -0.3 680,270 - +0.2 680,270 - +0.0 680,283 - +0.1 680,283 - -0.1 680,323 - -0.1 680,377 - B158DRAFT_0678 0.10 -0.3 680,409 - B158DRAFT_0678 0.17 +0.5 680,409 - B158DRAFT_0678 0.17 -0.1 680,423 + B158DRAFT_0678 0.20 +0.0 680,423 + B158DRAFT_0678 0.20 -0.4 680,441 - B158DRAFT_0678 0.23 +0.1 680,480 - B158DRAFT_0678 0.31 -0.0 680,480 - B158DRAFT_0678 0.31 +0.5 680,480 - B158DRAFT_0678 0.31 -0.2 680,488 - B158DRAFT_0678 0.32 +0.2 680,488 - B158DRAFT_0678 0.32 +0.4 680,531 + B158DRAFT_0678 0.41 +0.2 680,539 - B158DRAFT_0678 0.42 +0.0 680,539 - B158DRAFT_0678 0.42 -0.8 680,566 - B158DRAFT_0678 0.48 -0.1 680,666 + B158DRAFT_0678 0.67 -0.5 680,666 + B158DRAFT_0678 0.67 -0.6 680,666 + B158DRAFT_0678 0.67 +0.1 680,674 - B158DRAFT_0678 0.69 -0.1 680,674 - B158DRAFT_0678 0.69 +0.6 680,674 - B158DRAFT_0678 0.69 -0.3 680,674 - B158DRAFT_0678 0.69 +0.2 680,770 + B158DRAFT_0678 0.88 -0.1 680,771 + B158DRAFT_0678 0.88 -0.6 680,777 + B158DRAFT_0678 0.89 -0.7 680,800 + -0.2 680,803 - -0.5 680,818 - -0.0 680,824 + +0.6 680,824 + -0.1 680,824 + -0.2 680,824 + -0.1 680,824 + -0.0 680,824 + -0.1 680,824 + -0.1 680,824 + +0.2 680,824 + -0.7 680,824 + +0.2 680,832 - -0.5 680,832 - -0.1 680,832 - -0.1 680,832 - +0.4 680,832 - -0.3 680,851 + -0.1 680,921 - -0.1 680,944 + -0.1 680,944 + -0.2 680,947 - -0.5 680,952 - +0.2 680,959 + -0.3 680,998 + B158DRAFT_0679 0.11 +0.3 680,998 + B158DRAFT_0679 0.11 -0.3 681,006 - B158DRAFT_0679 0.11 -1.2 681,032 - B158DRAFT_0679 0.14 -0.1 681,094 + B158DRAFT_0679 0.21 -0.5 681,094 + B158DRAFT_0679 0.21 -0.2 681,134 + B158DRAFT_0679 0.25 -0.5 681,200 + B158DRAFT_0679 0.32 -0.1 681,210 + B158DRAFT_0679 0.33 +0.0 681,251 - B158DRAFT_0679 0.37 +0.2
Or see this region's nucleotide sequence