Strain Fitness in Kangiella aquimarina DSM 16071 around B158DRAFT_0419

Experiment: m.b. Rifampicin 0.0004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntB158DRAFT_0417 and B158DRAFT_0418 are separated by 11 nucleotidesB158DRAFT_0418 and B158DRAFT_0419 are separated by 20 nucleotidesB158DRAFT_0419 and B158DRAFT_0420 overlap by 1 nucleotidesB158DRAFT_0420 and B158DRAFT_0421 are separated by 12 nucleotides B158DRAFT_0417: B158DRAFT_0417 - UbiD family decarboxylases, at 420,377 to 421,864 _0417 B158DRAFT_0418: B158DRAFT_0418 - 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases, at 421,876 to 422,625 _0418 B158DRAFT_0419: B158DRAFT_0419 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 422,646 to 423,863 _0419 B158DRAFT_0420: B158DRAFT_0420 - 3-oxoacyl-(acyl-carrier-protein) reductase, putative, at 423,863 to 424,588 _0420 B158DRAFT_0421: B158DRAFT_0421 - Predicted 3-hydroxylacyl-(acyl carrier protein) dehydratase, at 424,601 to 425,077 _0421 Position (kb) 422 423 424Strain fitness (log2 ratio) -2 -1 0 1 2at 421.840 kb on - strandat 421.840 kb on - strandat 421.865 kb on - strandat 421.865 kb on - strandat 421.962 kb on - strand, within B158DRAFT_0418at 421.966 kb on + strand, within B158DRAFT_0418at 421.996 kb on + strand, within B158DRAFT_0418at 422.008 kb on - strand, within B158DRAFT_0418at 422.069 kb on + strand, within B158DRAFT_0418at 422.074 kb on + strand, within B158DRAFT_0418at 422.074 kb on + strand, within B158DRAFT_0418at 422.090 kb on - strand, within B158DRAFT_0418at 422.105 kb on - strand, within B158DRAFT_0418at 422.116 kb on + strand, within B158DRAFT_0418at 422.163 kb on - strand, within B158DRAFT_0418at 422.164 kb on - strand, within B158DRAFT_0418at 422.171 kb on - strand, within B158DRAFT_0418at 422.174 kb on - strand, within B158DRAFT_0418at 422.219 kb on - strand, within B158DRAFT_0418at 422.254 kb on - strand, within B158DRAFT_0418at 422.313 kb on + strand, within B158DRAFT_0418at 422.313 kb on + strand, within B158DRAFT_0418at 422.321 kb on - strand, within B158DRAFT_0418at 422.321 kb on - strand, within B158DRAFT_0418at 422.331 kb on - strand, within B158DRAFT_0418at 422.348 kb on + strand, within B158DRAFT_0418at 422.348 kb on + strand, within B158DRAFT_0418at 422.356 kb on - strand, within B158DRAFT_0418at 422.359 kb on + strand, within B158DRAFT_0418at 422.359 kb on + strand, within B158DRAFT_0418at 422.359 kb on + strand, within B158DRAFT_0418at 422.367 kb on - strand, within B158DRAFT_0418at 422.367 kb on - strand, within B158DRAFT_0418at 422.367 kb on - strand, within B158DRAFT_0418at 422.367 kb on - strand, within B158DRAFT_0418at 422.367 kb on - strand, within B158DRAFT_0418at 422.367 kb on - strand, within B158DRAFT_0418at 422.369 kb on + strand, within B158DRAFT_0418at 422.377 kb on - strand, within B158DRAFT_0418at 422.435 kb on + strand, within B158DRAFT_0418at 422.444 kb on - strand, within B158DRAFT_0418at 422.444 kb on - strand, within B158DRAFT_0418at 422.451 kb on - strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.510 kb on + strand, within B158DRAFT_0418at 422.518 kb on - strand, within B158DRAFT_0418at 422.518 kb on - strand, within B158DRAFT_0418at 422.518 kb on - strand, within B158DRAFT_0418at 422.518 kb on - strand, within B158DRAFT_0418at 422.619 kb on + strandat 422.619 kb on + strandat 422.627 kb on - strandat 422.627 kb on - strandat 422.637 kb on - strandat 422.671 kb on + strandat 422.720 kb on + strandat 422.725 kb on + strandat 422.725 kb on + strandat 422.725 kb on + strandat 422.733 kb on - strandat 422.733 kb on - strandat 422.758 kb on + strandat 422.783 kb on + strand, within B158DRAFT_0419at 422.783 kb on + strand, within B158DRAFT_0419at 422.791 kb on - strand, within B158DRAFT_0419at 422.791 kb on - strand, within B158DRAFT_0419at 422.855 kb on + strand, within B158DRAFT_0419at 422.855 kb on + strand, within B158DRAFT_0419at 422.855 kb on + strand, within B158DRAFT_0419at 422.855 kb on + strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.863 kb on - strand, within B158DRAFT_0419at 422.892 kb on + strand, within B158DRAFT_0419at 422.892 kb on + strand, within B158DRAFT_0419at 422.892 kb on + strand, within B158DRAFT_0419at 422.900 kb on - strand, within B158DRAFT_0419at 422.900 kb on - strand, within B158DRAFT_0419at 422.900 kb on - strand, within B158DRAFT_0419at 422.900 kb on - strand, within B158DRAFT_0419at 422.900 kb on - strand, within B158DRAFT_0419at 422.960 kb on - strand, within B158DRAFT_0419at 422.960 kb on - strand, within B158DRAFT_0419at 422.962 kb on + strand, within B158DRAFT_0419at 422.976 kb on + strand, within B158DRAFT_0419at 422.976 kb on + strand, within B158DRAFT_0419at 422.976 kb on + strand, within B158DRAFT_0419at 422.996 kb on - strand, within B158DRAFT_0419at 423.005 kb on - strand, within B158DRAFT_0419at 423.068 kb on - strand, within B158DRAFT_0419at 423.129 kb on - strand, within B158DRAFT_0419at 423.153 kb on + strand, within B158DRAFT_0419at 423.281 kb on - strand, within B158DRAFT_0419at 423.283 kb on + strand, within B158DRAFT_0419at 423.291 kb on - strand, within B158DRAFT_0419at 423.293 kb on + strand, within B158DRAFT_0419at 423.331 kb on + strand, within B158DRAFT_0419at 423.348 kb on + strand, within B158DRAFT_0419at 423.356 kb on - strand, within B158DRAFT_0419at 423.356 kb on - strand, within B158DRAFT_0419at 423.363 kb on - strand, within B158DRAFT_0419at 423.363 kb on - strand, within B158DRAFT_0419at 423.363 kb on - strand, within B158DRAFT_0419at 423.377 kb on - strand, within B158DRAFT_0419at 423.390 kb on + strand, within B158DRAFT_0419at 423.393 kb on - strand, within B158DRAFT_0419at 423.399 kb on + strand, within B158DRAFT_0419at 423.453 kb on - strand, within B158DRAFT_0419at 423.461 kb on - strand, within B158DRAFT_0419at 423.484 kb on - strand, within B158DRAFT_0419at 423.499 kb on + strand, within B158DRAFT_0419at 423.527 kb on - strand, within B158DRAFT_0419at 423.566 kb on + strand, within B158DRAFT_0419at 423.588 kb on - strand, within B158DRAFT_0419at 423.610 kb on - strand, within B158DRAFT_0419at 423.610 kb on - strand, within B158DRAFT_0419at 423.626 kb on + strand, within B158DRAFT_0419at 423.629 kb on - strand, within B158DRAFT_0419at 423.629 kb on - strand, within B158DRAFT_0419at 423.634 kb on - strand, within B158DRAFT_0419at 423.696 kb on + strand, within B158DRAFT_0419at 423.696 kb on + strand, within B158DRAFT_0419at 423.697 kb on + strand, within B158DRAFT_0419at 423.726 kb on + strand, within B158DRAFT_0419at 423.739 kb on - strand, within B158DRAFT_0419at 423.759 kb on + strandat 423.759 kb on + strandat 423.762 kb on - strandat 423.802 kb on + strandat 423.861 kb on + strandat 423.869 kb on - strandat 423.923 kb on - strandat 423.943 kb on - strand, within B158DRAFT_0420at 424.106 kb on + strand, within B158DRAFT_0420at 424.130 kb on + strand, within B158DRAFT_0420at 424.149 kb on - strand, within B158DRAFT_0420at 424.161 kb on + strand, within B158DRAFT_0420at 424.169 kb on - strand, within B158DRAFT_0420at 424.183 kb on - strand, within B158DRAFT_0420at 424.314 kb on + strand, within B158DRAFT_0420at 424.316 kb on + strand, within B158DRAFT_0420at 424.317 kb on - strand, within B158DRAFT_0420at 424.334 kb on - strand, within B158DRAFT_0420at 424.474 kb on + strand, within B158DRAFT_0420at 424.490 kb on + strand, within B158DRAFT_0420at 424.515 kb on + strand, within B158DRAFT_0420at 424.523 kb on - strandat 424.564 kb on - strandat 424.571 kb on - strandat 424.576 kb on - strandat 424.578 kb on + strandat 424.586 kb on - strandat 424.586 kb on - strandat 424.683 kb on - strand, within B158DRAFT_0421at 424.738 kb on - strand, within B158DRAFT_0421at 424.738 kb on - strand, within B158DRAFT_0421at 424.740 kb on + strand, within B158DRAFT_0421at 424.740 kb on + strand, within B158DRAFT_0421at 424.740 kb on + strand, within B158DRAFT_0421at 424.740 kb on + strand, within B158DRAFT_0421at 424.740 kb on + strand, within B158DRAFT_0421at 424.748 kb on - strand, within B158DRAFT_0421at 424.748 kb on - strand, within B158DRAFT_0421at 424.748 kb on - strand, within B158DRAFT_0421at 424.748 kb on - strand, within B158DRAFT_0421

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Rifampicin 0.0004 mg/ml
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421,840 - -0.2
421,840 - -0.4
421,865 - +0.4
421,865 - -0.4
421,962 - B158DRAFT_0418 0.11 -0.4
421,966 + B158DRAFT_0418 0.12 -0.5
421,996 + B158DRAFT_0418 0.16 +0.1
422,008 - B158DRAFT_0418 0.18 -1.2
422,069 + B158DRAFT_0418 0.26 -0.9
422,074 + B158DRAFT_0418 0.26 -1.9
422,074 + B158DRAFT_0418 0.26 -0.7
422,090 - B158DRAFT_0418 0.29 -0.2
422,105 - B158DRAFT_0418 0.31 -0.3
422,116 + B158DRAFT_0418 0.32 -0.2
422,163 - B158DRAFT_0418 0.38 -1.0
422,164 - B158DRAFT_0418 0.38 -0.5
422,171 - B158DRAFT_0418 0.39 -0.3
422,174 - B158DRAFT_0418 0.40 -0.5
422,219 - B158DRAFT_0418 0.46 -0.9
422,254 - B158DRAFT_0418 0.50 +0.2
422,313 + B158DRAFT_0418 0.58 +0.2
422,313 + B158DRAFT_0418 0.58 -1.6
422,321 - B158DRAFT_0418 0.59 +0.2
422,321 - B158DRAFT_0418 0.59 +0.1
422,331 - B158DRAFT_0418 0.61 -0.4
422,348 + B158DRAFT_0418 0.63 -1.9
422,348 + B158DRAFT_0418 0.63 -0.9
422,356 - B158DRAFT_0418 0.64 +0.1
422,359 + B158DRAFT_0418 0.64 -0.4
422,359 + B158DRAFT_0418 0.64 -0.4
422,359 + B158DRAFT_0418 0.64 -0.6
422,367 - B158DRAFT_0418 0.65 -1.0
422,367 - B158DRAFT_0418 0.65 -0.7
422,367 - B158DRAFT_0418 0.65 -0.5
422,367 - B158DRAFT_0418 0.65 +0.4
422,367 - B158DRAFT_0418 0.65 -0.5
422,367 - B158DRAFT_0418 0.65 -0.3
422,369 + B158DRAFT_0418 0.66 -1.4
422,377 - B158DRAFT_0418 0.67 -0.4
422,435 + B158DRAFT_0418 0.75 +0.9
422,444 - B158DRAFT_0418 0.76 -0.7
422,444 - B158DRAFT_0418 0.76 -0.1
422,451 - B158DRAFT_0418 0.77 -0.6
422,510 + B158DRAFT_0418 0.85 -2.0
422,510 + B158DRAFT_0418 0.85 +0.2
422,510 + B158DRAFT_0418 0.85 +0.0
422,510 + B158DRAFT_0418 0.85 +0.3
422,510 + B158DRAFT_0418 0.85 -0.7
422,510 + B158DRAFT_0418 0.85 -1.3
422,510 + B158DRAFT_0418 0.85 -0.4
422,510 + B158DRAFT_0418 0.85 -1.1
422,518 - B158DRAFT_0418 0.86 -0.3
422,518 - B158DRAFT_0418 0.86 -0.9
422,518 - B158DRAFT_0418 0.86 -1.1
422,518 - B158DRAFT_0418 0.86 -0.7
422,619 + -0.3
422,619 + -0.4
422,627 - +0.2
422,627 - -0.3
422,637 - +0.3
422,671 + +1.0
422,720 + +0.3
422,725 + +0.5
422,725 + +0.8
422,725 + +0.8
422,733 - +0.4
422,733 - +0.4
422,758 + +0.2
422,783 + B158DRAFT_0419 0.11 +0.5
422,783 + B158DRAFT_0419 0.11 +1.4
422,791 - B158DRAFT_0419 0.12 +0.4
422,791 - B158DRAFT_0419 0.12 +0.4
422,855 + B158DRAFT_0419 0.17 -0.7
422,855 + B158DRAFT_0419 0.17 +0.7
422,855 + B158DRAFT_0419 0.17 +0.9
422,855 + B158DRAFT_0419 0.17 +0.7
422,863 - B158DRAFT_0419 0.18 +0.7
422,863 - B158DRAFT_0419 0.18 +0.7
422,863 - B158DRAFT_0419 0.18 +0.9
422,863 - B158DRAFT_0419 0.18 +0.4
422,863 - B158DRAFT_0419 0.18 +0.4
422,863 - B158DRAFT_0419 0.18 +1.0
422,863 - B158DRAFT_0419 0.18 +1.3
422,892 + B158DRAFT_0419 0.20 +0.5
422,892 + B158DRAFT_0419 0.20 +0.6
422,892 + B158DRAFT_0419 0.20 +0.2
422,900 - B158DRAFT_0419 0.21 +0.5
422,900 - B158DRAFT_0419 0.21 +0.4
422,900 - B158DRAFT_0419 0.21 +0.6
422,900 - B158DRAFT_0419 0.21 +0.4
422,900 - B158DRAFT_0419 0.21 +0.8
422,960 - B158DRAFT_0419 0.26 +0.7
422,960 - B158DRAFT_0419 0.26 +0.6
422,962 + B158DRAFT_0419 0.26 +0.6
422,976 + B158DRAFT_0419 0.27 +0.5
422,976 + B158DRAFT_0419 0.27 +0.6
422,976 + B158DRAFT_0419 0.27 +0.9
422,996 - B158DRAFT_0419 0.29 +0.8
423,005 - B158DRAFT_0419 0.29 +0.6
423,068 - B158DRAFT_0419 0.35 +0.6
423,129 - B158DRAFT_0419 0.40 +0.3
423,153 + B158DRAFT_0419 0.42 -0.2
423,281 - B158DRAFT_0419 0.52 +0.4
423,283 + B158DRAFT_0419 0.52 +1.0
423,291 - B158DRAFT_0419 0.53 +0.6
423,293 + B158DRAFT_0419 0.53 +0.3
423,331 + B158DRAFT_0419 0.56 +0.4
423,348 + B158DRAFT_0419 0.58 -0.5
423,356 - B158DRAFT_0419 0.58 -0.0
423,356 - B158DRAFT_0419 0.58 +0.3
423,363 - B158DRAFT_0419 0.59 +1.5
423,363 - B158DRAFT_0419 0.59 +1.2
423,363 - B158DRAFT_0419 0.59 +0.4
423,377 - B158DRAFT_0419 0.60 +0.7
423,390 + B158DRAFT_0419 0.61 +0.8
423,393 - B158DRAFT_0419 0.61 +0.5
423,399 + B158DRAFT_0419 0.62 +0.4
423,453 - B158DRAFT_0419 0.66 +0.8
423,461 - B158DRAFT_0419 0.67 +0.2
423,484 - B158DRAFT_0419 0.69 +1.0
423,499 + B158DRAFT_0419 0.70 +0.5
423,527 - B158DRAFT_0419 0.72 +0.8
423,566 + B158DRAFT_0419 0.76 +0.6
423,588 - B158DRAFT_0419 0.77 +0.8
423,610 - B158DRAFT_0419 0.79 +0.3
423,610 - B158DRAFT_0419 0.79 +0.1
423,626 + B158DRAFT_0419 0.80 +0.5
423,629 - B158DRAFT_0419 0.81 +1.4
423,629 - B158DRAFT_0419 0.81 +1.0
423,634 - B158DRAFT_0419 0.81 +0.5
423,696 + B158DRAFT_0419 0.86 +0.6
423,696 + B158DRAFT_0419 0.86 +0.6
423,697 + B158DRAFT_0419 0.86 +1.5
423,726 + B158DRAFT_0419 0.89 +0.5
423,739 - B158DRAFT_0419 0.90 +0.6
423,759 + +0.4
423,759 + +0.4
423,762 - +1.4
423,802 + +0.4
423,861 + +0.2
423,869 - +0.5
423,923 - +0.6
423,943 - B158DRAFT_0420 0.11 -0.7
424,106 + B158DRAFT_0420 0.33 +1.1
424,130 + B158DRAFT_0420 0.37 +2.0
424,149 - B158DRAFT_0420 0.39 +0.6
424,161 + B158DRAFT_0420 0.41 +0.0
424,169 - B158DRAFT_0420 0.42 +0.5
424,183 - B158DRAFT_0420 0.44 +0.5
424,314 + B158DRAFT_0420 0.62 +1.0
424,316 + B158DRAFT_0420 0.62 +0.5
424,317 - B158DRAFT_0420 0.63 +0.3
424,334 - B158DRAFT_0420 0.65 +0.6
424,474 + B158DRAFT_0420 0.84 +0.4
424,490 + B158DRAFT_0420 0.86 +1.0
424,515 + B158DRAFT_0420 0.90 -0.3
424,523 - +0.6
424,564 - +0.4
424,571 - +0.5
424,576 - +0.3
424,578 + +1.3
424,586 - +0.5
424,586 - +0.4
424,683 - B158DRAFT_0421 0.17 +0.9
424,738 - B158DRAFT_0421 0.29 +0.9
424,738 - B158DRAFT_0421 0.29 +0.8
424,740 + B158DRAFT_0421 0.29 +1.0
424,740 + B158DRAFT_0421 0.29 +1.1
424,740 + B158DRAFT_0421 0.29 +0.6
424,740 + B158DRAFT_0421 0.29 +1.1
424,740 + B158DRAFT_0421 0.29 +0.2
424,748 - B158DRAFT_0421 0.31 -0.1
424,748 - B158DRAFT_0421 0.31 +0.7
424,748 - B158DRAFT_0421 0.31 +0.3
424,748 - B158DRAFT_0421 0.31 +0.4

Or see this region's nucleotide sequence