Experiment: L-Histidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu2067 and Atu2068 are separated by 185 nucleotides Atu2068 and Atu2069 overlap by 4 nucleotides Atu2069 and Atu2070 overlap by 4 nucleotides
Atu2067: Atu2067 - hypothetical protein, at 2,029,228 to 2,029,464
Atu2067
Atu2068: Atu2068 - hypothetical protein, at 2,029,650 to 2,030,372
Atu2068
Atu2069: Atu2069 - hypothetical protein, at 2,030,369 to 2,030,683
Atu2069
Atu2070: Atu2070 - aminopeptidase P, at 2,030,680 to 2,032,521
Atu2070
Position (kb)
2030
2031 Strain fitness (log2 ratio)
-1
0
1 at 2029.432 kb on + strand, within Atu2067 at 2029.481 kb on + strand at 2029.522 kb on - strand at 2029.542 kb on - strand at 2029.640 kb on - strand at 2029.674 kb on + strand at 2029.674 kb on + strand at 2029.674 kb on + strand at 2029.674 kb on + strand at 2029.795 kb on + strand, within Atu2068 at 2029.917 kb on - strand, within Atu2068 at 2030.057 kb on + strand, within Atu2068 at 2030.065 kb on - strand, within Atu2068 at 2030.142 kb on - strand, within Atu2068 at 2030.172 kb on + strand, within Atu2068 at 2030.180 kb on - strand, within Atu2068 at 2030.198 kb on + strand, within Atu2068 at 2030.522 kb on + strand, within Atu2069 at 2030.594 kb on + strand, within Atu2069 at 2030.602 kb on - strand, within Atu2069 at 2030.619 kb on + strand, within Atu2069 at 2030.692 kb on + strand at 2030.751 kb on + strand at 2030.983 kb on + strand, within Atu2070 at 2031.008 kb on + strand, within Atu2070 at 2031.187 kb on + strand, within Atu2070 at 2031.195 kb on - strand, within Atu2070 at 2031.195 kb on - strand, within Atu2070 at 2031.237 kb on + strand, within Atu2070 at 2031.439 kb on - strand, within Atu2070 at 2031.514 kb on + strand, within Atu2070 at 2031.613 kb on - strand, within Atu2070
Per-strain Table
Position Strand Gene LocusTag Fraction L-Histidine (N) remove 2,029,432 + Atu2067 0.86 -0.1 2,029,481 + +0.4 2,029,522 - +0.1 2,029,542 - -0.2 2,029,640 - -1.3 2,029,674 + -0.9 2,029,674 + -0.5 2,029,674 + -0.1 2,029,674 + -0.5 2,029,795 + Atu2068 0.20 -0.4 2,029,917 - Atu2068 0.37 -0.5 2,030,057 + Atu2068 0.56 -0.0 2,030,065 - Atu2068 0.57 -0.0 2,030,142 - Atu2068 0.68 +0.5 2,030,172 + Atu2068 0.72 -0.6 2,030,180 - Atu2068 0.73 +0.0 2,030,198 + Atu2068 0.76 -1.0 2,030,522 + Atu2069 0.49 -0.5 2,030,594 + Atu2069 0.71 -0.9 2,030,602 - Atu2069 0.74 -1.2 2,030,619 + Atu2069 0.79 -0.4 2,030,692 + +0.4 2,030,751 + -0.7 2,030,983 + Atu2070 0.16 -0.3 2,031,008 + Atu2070 0.18 -0.1 2,031,187 + Atu2070 0.28 +1.0 2,031,195 - Atu2070 0.28 +0.5 2,031,195 - Atu2070 0.28 +0.5 2,031,237 + Atu2070 0.30 -0.1 2,031,439 - Atu2070 0.41 -0.1 2,031,514 + Atu2070 0.45 -0.7 2,031,613 - Atu2070 0.51 +0.0
Or see this region's nucleotide sequence