Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_874 and PfGW456L13_875 are separated by 166 nucleotides PfGW456L13_875 and PfGW456L13_876 are separated by 234 nucleotides PfGW456L13_876 and PfGW456L13_877 overlap by 14 nucleotides
PfGW456L13_874 - Polyphosphate kinase (EC 2.7.4.1), at 980,683 to 982,911
_874
PfGW456L13_875 - Exopolyphosphatase (EC 3.6.1.11), at 983,078 to 984,580
_875
PfGW456L13_876 - Glutamate transport ATP-binding protein, at 984,815 to 985,552
_876
PfGW456L13_877 - Putative amino acid ABC transporter, permease protein, at 985,539 to 986,189
_877
Position (kb) 983
984
985 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.117 kb on + strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.118 kb on - strand, within PfGW456L13_874 at 982.212 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.216 kb on + strand, within PfGW456L13_874 at 982.217 kb on - strand, within PfGW456L13_874 at 982.217 kb on - strand, within PfGW456L13_874 at 982.217 kb on - strand, within PfGW456L13_874 at 982.217 kb on - strand, within PfGW456L13_874 at 982.217 kb on - strand, within PfGW456L13_874 at 982.217 kb on - strand, within PfGW456L13_874 at 982.240 kb on + strand, within PfGW456L13_874 at 982.240 kb on + strand, within PfGW456L13_874 at 982.240 kb on + strand, within PfGW456L13_874 at 982.241 kb on - strand, within PfGW456L13_874 at 982.241 kb on - strand, within PfGW456L13_874 at 982.241 kb on - strand, within PfGW456L13_874 at 982.241 kb on - strand, within PfGW456L13_874 at 982.250 kb on - strand, within PfGW456L13_874 at 982.250 kb on - strand, within PfGW456L13_874 at 982.250 kb on - strand, within PfGW456L13_874 at 982.250 kb on - strand, within PfGW456L13_874 at 982.250 kb on - strand, within PfGW456L13_874 at 982.324 kb on - strand, within PfGW456L13_874 at 982.324 kb on - strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.486 kb on + strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.487 kb on - strand, within PfGW456L13_874 at 982.627 kb on + strand, within PfGW456L13_874 at 982.627 kb on + strand, within PfGW456L13_874 at 982.627 kb on + strand, within PfGW456L13_874 at 982.768 kb on + strand at 982.768 kb on + strand at 982.768 kb on + strand at 982.768 kb on + strand at 982.769 kb on - strand at 982.769 kb on - strand at 982.769 kb on - strand at 982.769 kb on - strand at 982.769 kb on - strand at 982.816 kb on + strand at 982.816 kb on + strand at 982.817 kb on - strand at 982.817 kb on - strand at 982.817 kb on - strand at 982.824 kb on + strand at 982.824 kb on + strand at 983.017 kb on + strand at 983.018 kb on - strand at 983.277 kb on - strand, within PfGW456L13_875 at 983.448 kb on + strand, within PfGW456L13_875 at 983.580 kb on - strand, within PfGW456L13_875 at 983.673 kb on + strand, within PfGW456L13_875 at 983.673 kb on + strand, within PfGW456L13_875 at 983.794 kb on + strand, within PfGW456L13_875 at 984.009 kb on + strand, within PfGW456L13_875 at 984.066 kb on + strand, within PfGW456L13_875 at 984.066 kb on + strand, within PfGW456L13_875 at 984.066 kb on + strand, within PfGW456L13_875 at 984.067 kb on - strand, within PfGW456L13_875 at 984.207 kb on + strand, within PfGW456L13_875 at 984.208 kb on - strand, within PfGW456L13_875 at 984.208 kb on - strand, within PfGW456L13_875 at 984.350 kb on - strand, within PfGW456L13_875 at 984.350 kb on - strand, within PfGW456L13_875 at 984.738 kb on + strand at 984.739 kb on - strand at 984.739 kb on - strand at 984.881 kb on + strand at 984.881 kb on + strand at 984.881 kb on + strand at 984.881 kb on + strand at 984.881 kb on + strand at 984.881 kb on + strand at 984.934 kb on + strand, within PfGW456L13_876 at 984.934 kb on + strand, within PfGW456L13_876 at 984.935 kb on - strand, within PfGW456L13_876 at 984.935 kb on - strand, within PfGW456L13_876 at 984.935 kb on - strand, within PfGW456L13_876 at 984.935 kb on - strand, within PfGW456L13_876 at 984.935 kb on - strand, within PfGW456L13_876 at 985.070 kb on + strand, within PfGW456L13_876 at 985.070 kb on + strand, within PfGW456L13_876 at 985.070 kb on + strand, within PfGW456L13_876 at 985.070 kb on + strand, within PfGW456L13_876 at 985.070 kb on + strand, within PfGW456L13_876 at 985.070 kb on + strand, within PfGW456L13_876 at 985.071 kb on - strand, within PfGW456L13_876 at 985.071 kb on - strand, within PfGW456L13_876 at 985.071 kb on - strand, within PfGW456L13_876 at 985.356 kb on + strand, within PfGW456L13_876 at 985.515 kb on + strand at 985.515 kb on + strand at 985.516 kb on - strand at 985.516 kb on - strand at 985.516 kb on - strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.518 kb on + strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.522 kb on + strand at 985.522 kb on + strand at 985.522 kb on + strand at 985.522 kb on + strand at 985.522 kb on + strand at 985.523 kb on - strand at 985.523 kb on - strand at 985.523 kb on - strand at 985.523 kb on - strand at 985.523 kb on - strand at 985.523 kb on - strand at 985.540 kb on + strand at 985.540 kb on + strand at 985.541 kb on - strand at 985.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 982,117 + PfGW456L13_874 0.64 -0.5 982,117 + PfGW456L13_874 0.64 -0.0 982,117 + PfGW456L13_874 0.64 -0.0 982,117 + PfGW456L13_874 0.64 +0.7 982,117 + PfGW456L13_874 0.64 -1.1 982,117 + PfGW456L13_874 0.64 -0.3 982,117 + PfGW456L13_874 0.64 -0.5 982,117 + PfGW456L13_874 0.64 -0.1 982,117 + PfGW456L13_874 0.64 -0.1 982,118 - PfGW456L13_874 0.64 +0.7 982,118 - PfGW456L13_874 0.64 -0.1 982,118 - PfGW456L13_874 0.64 +0.9 982,118 - PfGW456L13_874 0.64 -0.4 982,118 - PfGW456L13_874 0.64 +1.5 982,118 - PfGW456L13_874 0.64 +0.1 982,118 - PfGW456L13_874 0.64 +0.9 982,118 - PfGW456L13_874 0.64 +1.1 982,118 - PfGW456L13_874 0.64 -0.4 982,118 - PfGW456L13_874 0.64 +1.7 982,118 - PfGW456L13_874 0.64 +0.9 982,118 - PfGW456L13_874 0.64 +0.5 982,118 - PfGW456L13_874 0.64 -1.5 982,118 - PfGW456L13_874 0.64 -0.4 982,118 - PfGW456L13_874 0.64 -0.6 982,118 - PfGW456L13_874 0.64 +0.9 982,118 - PfGW456L13_874 0.64 -0.4 982,118 - PfGW456L13_874 0.64 -0.2 982,118 - PfGW456L13_874 0.64 -0.6 982,118 - PfGW456L13_874 0.64 +0.8 982,118 - PfGW456L13_874 0.64 +1.2 982,118 - PfGW456L13_874 0.64 +0.8 982,212 + PfGW456L13_874 0.69 +0.8 982,216 + PfGW456L13_874 0.69 -1.5 982,216 + PfGW456L13_874 0.69 +0.3 982,216 + PfGW456L13_874 0.69 -0.0 982,216 + PfGW456L13_874 0.69 -0.5 982,216 + PfGW456L13_874 0.69 -0.3 982,216 + PfGW456L13_874 0.69 +0.5 982,216 + PfGW456L13_874 0.69 -1.3 982,216 + PfGW456L13_874 0.69 -1.8 982,216 + PfGW456L13_874 0.69 -0.4 982,216 + PfGW456L13_874 0.69 -1.1 982,217 - PfGW456L13_874 0.69 -0.0 982,217 - PfGW456L13_874 0.69 +0.9 982,217 - PfGW456L13_874 0.69 +0.3 982,217 - PfGW456L13_874 0.69 +1.2 982,217 - PfGW456L13_874 0.69 -1.0 982,217 - PfGW456L13_874 0.69 +0.3 982,240 + PfGW456L13_874 0.70 -1.6 982,240 + PfGW456L13_874 0.70 -1.5 982,240 + PfGW456L13_874 0.70 +0.0 982,241 - PfGW456L13_874 0.70 -1.5 982,241 - PfGW456L13_874 0.70 -0.2 982,241 - PfGW456L13_874 0.70 +0.4 982,241 - PfGW456L13_874 0.70 -0.7 982,250 - PfGW456L13_874 0.70 -0.3 982,250 - PfGW456L13_874 0.70 -2.0 982,250 - PfGW456L13_874 0.70 -1.2 982,250 - PfGW456L13_874 0.70 -0.2 982,250 - PfGW456L13_874 0.70 +0.1 982,324 - PfGW456L13_874 0.74 -0.4 982,324 - PfGW456L13_874 0.74 +0.3 982,486 + PfGW456L13_874 0.81 -0.7 982,486 + PfGW456L13_874 0.81 -0.4 982,486 + PfGW456L13_874 0.81 +0.4 982,486 + PfGW456L13_874 0.81 -0.9 982,486 + PfGW456L13_874 0.81 -0.5 982,486 + PfGW456L13_874 0.81 -0.7 982,486 + PfGW456L13_874 0.81 -0.7 982,486 + PfGW456L13_874 0.81 -0.7 982,486 + PfGW456L13_874 0.81 +0.3 982,486 + PfGW456L13_874 0.81 +0.6 982,486 + PfGW456L13_874 0.81 -0.2 982,487 - PfGW456L13_874 0.81 +0.4 982,487 - PfGW456L13_874 0.81 +0.2 982,487 - PfGW456L13_874 0.81 +0.2 982,487 - PfGW456L13_874 0.81 +0.1 982,487 - PfGW456L13_874 0.81 -0.6 982,487 - PfGW456L13_874 0.81 +0.9 982,487 - PfGW456L13_874 0.81 -0.8 982,627 + PfGW456L13_874 0.87 -1.0 982,627 + PfGW456L13_874 0.87 -1.9 982,627 + PfGW456L13_874 0.87 -0.2 982,768 + -0.1 982,768 + -1.1 982,768 + +0.2 982,768 + -0.2 982,769 - -0.5 982,769 - +1.7 982,769 - +0.4 982,769 - +0.1 982,769 - -1.4 982,816 + +0.5 982,816 + +0.7 982,817 - +0.3 982,817 - +0.2 982,817 - +0.4 982,824 + -0.1 982,824 + -0.5 983,017 + +1.1 983,018 - +0.9 983,277 - PfGW456L13_875 0.13 -0.1 983,448 + PfGW456L13_875 0.25 +1.8 983,580 - PfGW456L13_875 0.33 +2.1 983,673 + PfGW456L13_875 0.40 -4.3 983,673 + PfGW456L13_875 0.40 -1.5 983,794 + PfGW456L13_875 0.48 -3.1 984,009 + PfGW456L13_875 0.62 -3.7 984,066 + PfGW456L13_875 0.66 -2.2 984,066 + PfGW456L13_875 0.66 -2.9 984,066 + PfGW456L13_875 0.66 -0.7 984,067 - PfGW456L13_875 0.66 -2.5 984,207 + PfGW456L13_875 0.75 -2.0 984,208 - PfGW456L13_875 0.75 -2.7 984,208 - PfGW456L13_875 0.75 -2.0 984,350 - PfGW456L13_875 0.85 -2.2 984,350 - PfGW456L13_875 0.85 -2.7 984,738 + +0.6 984,739 - -0.9 984,739 - +0.5 984,881 + +1.6 984,881 + +1.2 984,881 + +0.8 984,881 + +0.2 984,881 + -0.7 984,881 + -0.4 984,934 + PfGW456L13_876 0.16 -0.2 984,934 + PfGW456L13_876 0.16 +0.5 984,935 - PfGW456L13_876 0.16 +0.0 984,935 - PfGW456L13_876 0.16 -0.1 984,935 - PfGW456L13_876 0.16 -0.2 984,935 - PfGW456L13_876 0.16 -0.2 984,935 - PfGW456L13_876 0.16 +0.3 985,070 + PfGW456L13_876 0.35 -0.7 985,070 + PfGW456L13_876 0.35 -0.5 985,070 + PfGW456L13_876 0.35 -0.5 985,070 + PfGW456L13_876 0.35 -1.4 985,070 + PfGW456L13_876 0.35 +1.0 985,070 + PfGW456L13_876 0.35 -1.0 985,071 - PfGW456L13_876 0.35 -1.1 985,071 - PfGW456L13_876 0.35 +0.1 985,071 - PfGW456L13_876 0.35 +0.0 985,356 + PfGW456L13_876 0.73 +0.0 985,515 + -0.5 985,515 + -0.7 985,516 - -0.1 985,516 - +0.1 985,516 - -0.9 985,518 + +0.0 985,518 + +0.6 985,518 + -0.1 985,518 + +1.5 985,518 + +0.1 985,518 + -0.6 985,518 + +0.5 985,518 + +0.4 985,518 + -0.5 985,518 + +0.4 985,518 + -0.5 985,518 + +0.5 985,518 + -0.2 985,518 + +0.2 985,518 + +0.3 985,518 + +0.2 985,519 - +0.1 985,519 - +0.4 985,519 - -0.2 985,519 - -0.3 985,519 - -0.9 985,519 - -2.0 985,519 - +1.5 985,519 - -0.5 985,519 - -0.5 985,519 - -1.0 985,519 - +0.5 985,519 - +1.1 985,519 - +0.9 985,519 - +0.6 985,519 - +0.5 985,519 - +0.7 985,519 - -0.3 985,519 - +0.1 985,519 - -0.2 985,519 - -0.4 985,519 - +0.5 985,519 - +0.9 985,522 + -0.3 985,522 + +0.4 985,522 + -1.5 985,522 + +1.5 985,522 + -0.1 985,523 - +0.2 985,523 - -0.6 985,523 - +0.9 985,523 - +1.2 985,523 - +0.9 985,523 - +0.1 985,540 + +0.4 985,540 + +0.6 985,541 - +1.4 985,570 + +1.0
Or see this region's nucleotide sequence