Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_863 and PfGW456L13_864 overlap by 4 nucleotides PfGW456L13_864 and PfGW456L13_865 are separated by 206 nucleotides PfGW456L13_865 and PfGW456L13_866 overlap by 1 nucleotides PfGW456L13_866 and PfGW456L13_867 are separated by 226 nucleotides
PfGW456L13_863 - Twin-arginine translocation protein TatB, at 969,061 to 970,206
_863
PfGW456L13_864 - hypothetical protein, at 970,203 to 970,511
_864
PfGW456L13_865 - Glutathione-regulated potassium-efflux system ATP-binding protein, at 970,718 to 972,628
_865
PfGW456L13_866 - Small-conductance mechanosensitive channel, at 972,628 to 973,209
_866
PfGW456L13_867 - Homoserine/homoserine lactone efflux protein, at 973,436 to 974,068
_867
Position (kb) 970
971
972
973 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 969.897 kb on - strand, within PfGW456L13_863 at 969.897 kb on - strand, within PfGW456L13_863 at 969.934 kb on - strand, within PfGW456L13_863 at 969.961 kb on - strand, within PfGW456L13_863 at 970.122 kb on - strand at 970.122 kb on - strand at 970.204 kb on + strand at 970.204 kb on + strand at 970.204 kb on + strand at 970.204 kb on + strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.205 kb on - strand at 970.293 kb on + strand, within PfGW456L13_864 at 970.293 kb on + strand, within PfGW456L13_864 at 970.293 kb on + strand, within PfGW456L13_864 at 970.293 kb on + strand, within PfGW456L13_864 at 970.294 kb on - strand, within PfGW456L13_864 at 970.344 kb on + strand, within PfGW456L13_864 at 970.344 kb on + strand, within PfGW456L13_864 at 970.345 kb on - strand, within PfGW456L13_864 at 970.345 kb on - strand, within PfGW456L13_864 at 970.496 kb on + strand at 970.523 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.630 kb on + strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.631 kb on - strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.634 kb on + strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.635 kb on - strand at 970.638 kb on + strand at 970.639 kb on - strand at 970.639 kb on - strand at 970.639 kb on - strand at 970.639 kb on - strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.667 kb on + strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.668 kb on - strand at 970.674 kb on - strand at 970.701 kb on + strand at 970.718 kb on - strand at 970.718 kb on - strand at 970.718 kb on - strand at 970.743 kb on + strand at 970.744 kb on - strand at 970.767 kb on + strand at 970.768 kb on - strand at 970.964 kb on + strand, within PfGW456L13_865 at 970.964 kb on + strand, within PfGW456L13_865 at 970.964 kb on + strand, within PfGW456L13_865 at 970.964 kb on + strand, within PfGW456L13_865 at 970.965 kb on - strand, within PfGW456L13_865 at 970.965 kb on - strand, within PfGW456L13_865 at 971.085 kb on - strand, within PfGW456L13_865 at 971.085 kb on - strand, within PfGW456L13_865 at 971.408 kb on + strand, within PfGW456L13_865 at 971.408 kb on + strand, within PfGW456L13_865 at 971.409 kb on - strand, within PfGW456L13_865 at 971.409 kb on - strand, within PfGW456L13_865 at 971.409 kb on - strand, within PfGW456L13_865 at 971.463 kb on - strand, within PfGW456L13_865 at 971.463 kb on - strand, within PfGW456L13_865 at 971.501 kb on + strand, within PfGW456L13_865 at 971.501 kb on + strand, within PfGW456L13_865 at 971.501 kb on + strand, within PfGW456L13_865 at 971.501 kb on + strand, within PfGW456L13_865 at 971.501 kb on + strand, within PfGW456L13_865 at 971.502 kb on - strand, within PfGW456L13_865 at 971.502 kb on - strand, within PfGW456L13_865 at 971.502 kb on - strand, within PfGW456L13_865 at 971.502 kb on - strand, within PfGW456L13_865 at 972.209 kb on + strand, within PfGW456L13_865 at 972.210 kb on - strand, within PfGW456L13_865 at 972.260 kb on + strand, within PfGW456L13_865 at 972.260 kb on + strand, within PfGW456L13_865 at 972.260 kb on + strand, within PfGW456L13_865 at 972.260 kb on + strand, within PfGW456L13_865 at 972.261 kb on - strand, within PfGW456L13_865 at 972.261 kb on - strand, within PfGW456L13_865 at 972.261 kb on - strand, within PfGW456L13_865 at 972.261 kb on - strand, within PfGW456L13_865 at 972.261 kb on - strand, within PfGW456L13_865 at 972.282 kb on - strand, within PfGW456L13_865 at 972.482 kb on + strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.483 kb on - strand at 972.686 kb on + strand at 972.715 kb on + strand, within PfGW456L13_866 at 972.715 kb on + strand, within PfGW456L13_866 at 972.716 kb on - strand, within PfGW456L13_866 at 972.995 kb on + strand, within PfGW456L13_866 at 972.995 kb on + strand, within PfGW456L13_866 at 972.995 kb on + strand, within PfGW456L13_866 at 972.995 kb on + strand, within PfGW456L13_866 at 973.073 kb on - strand, within PfGW456L13_866 at 973.229 kb on + strand at 973.229 kb on + strand at 973.360 kb on + strand at 973.361 kb on - strand at 973.361 kb on - strand at 973.396 kb on + strand at 973.396 kb on + strand at 973.396 kb on + strand at 973.396 kb on + strand at 973.396 kb on + strand at 973.396 kb on + strand at 973.397 kb on - strand at 973.397 kb on - strand at 973.397 kb on - strand at 973.397 kb on - strand at 973.401 kb on + strand at 973.401 kb on + strand at 973.402 kb on - strand at 973.402 kb on - strand at 973.402 kb on - strand at 973.402 kb on - strand at 973.535 kb on + strand, within PfGW456L13_867 at 973.535 kb on + strand, within PfGW456L13_867
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 969,897 - PfGW456L13_863 0.73 +1.1 969,897 - PfGW456L13_863 0.73 +0.3 969,934 - PfGW456L13_863 0.76 -2.0 969,961 - PfGW456L13_863 0.79 -0.2 970,122 - -0.7 970,122 - +0.1 970,204 + +0.1 970,204 + -0.5 970,204 + +0.3 970,204 + -3.8 970,205 - -0.8 970,205 - +0.1 970,205 - -0.5 970,205 - -1.7 970,205 - -0.5 970,205 - +0.4 970,205 - +0.7 970,205 - +0.3 970,205 - +0.4 970,293 + PfGW456L13_864 0.29 +1.1 970,293 + PfGW456L13_864 0.29 -0.1 970,293 + PfGW456L13_864 0.29 +0.0 970,293 + PfGW456L13_864 0.29 -0.1 970,294 - PfGW456L13_864 0.29 +0.1 970,344 + PfGW456L13_864 0.46 +0.3 970,344 + PfGW456L13_864 0.46 +0.9 970,345 - PfGW456L13_864 0.46 +0.8 970,345 - PfGW456L13_864 0.46 +0.7 970,496 + +2.3 970,523 + +0.9 970,630 + -0.1 970,630 + +0.5 970,630 + -0.1 970,630 + +0.9 970,630 + +0.1 970,630 + +1.0 970,630 + +0.2 970,630 + +0.6 970,630 + +0.2 970,630 + -0.3 970,631 - -2.3 970,631 - +1.0 970,631 - -1.3 970,631 - -0.5 970,631 - -0.3 970,631 - +1.1 970,631 - +1.1 970,631 - +0.9 970,631 - +1.6 970,631 - -1.5 970,634 + +0.4 970,634 + +0.4 970,634 + +1.1 970,634 + +1.5 970,634 + +1.1 970,635 - +1.1 970,635 - +0.9 970,635 - +0.4 970,635 - +0.2 970,635 - -2.3 970,635 - +0.6 970,635 - -0.3 970,635 - +0.8 970,635 - +0.7 970,635 - +0.7 970,635 - +0.3 970,635 - -1.3 970,635 - +0.6 970,638 + +0.7 970,639 - -0.1 970,639 - -0.0 970,639 - -1.0 970,639 - +1.3 970,667 + +2.3 970,667 + -0.2 970,667 + +1.3 970,667 + +0.4 970,667 + +0.0 970,667 + -0.0 970,667 + -0.3 970,667 + +1.0 970,667 + +0.7 970,668 - -0.2 970,668 - -1.0 970,668 - +0.1 970,668 - -0.7 970,668 - -0.1 970,668 - +0.1 970,668 - +0.7 970,668 - -0.5 970,668 - -0.9 970,668 - +0.5 970,668 - +0.5 970,668 - -0.5 970,668 - -0.2 970,668 - -0.4 970,668 - +0.5 970,668 - -0.0 970,668 - +1.3 970,668 - -0.5 970,668 - -1.1 970,668 - -0.0 970,668 - -0.7 970,674 - +0.3 970,701 + -0.3 970,718 - -0.7 970,718 - -1.8 970,718 - -1.1 970,743 + -0.9 970,744 - +0.3 970,767 + +0.6 970,768 - -1.9 970,964 + PfGW456L13_865 0.13 +0.5 970,964 + PfGW456L13_865 0.13 -0.3 970,964 + PfGW456L13_865 0.13 +0.1 970,964 + PfGW456L13_865 0.13 +0.8 970,965 - PfGW456L13_865 0.13 +0.2 970,965 - PfGW456L13_865 0.13 -0.8 971,085 - PfGW456L13_865 0.19 -0.7 971,085 - PfGW456L13_865 0.19 -0.6 971,408 + PfGW456L13_865 0.36 -1.2 971,408 + PfGW456L13_865 0.36 -0.4 971,409 - PfGW456L13_865 0.36 +2.7 971,409 - PfGW456L13_865 0.36 -1.0 971,409 - PfGW456L13_865 0.36 -1.4 971,463 - PfGW456L13_865 0.39 -0.2 971,463 - PfGW456L13_865 0.39 -0.3 971,501 + PfGW456L13_865 0.41 +0.6 971,501 + PfGW456L13_865 0.41 -0.4 971,501 + PfGW456L13_865 0.41 -1.9 971,501 + PfGW456L13_865 0.41 +0.1 971,501 + PfGW456L13_865 0.41 -0.1 971,502 - PfGW456L13_865 0.41 +0.4 971,502 - PfGW456L13_865 0.41 -0.9 971,502 - PfGW456L13_865 0.41 -2.2 971,502 - PfGW456L13_865 0.41 -1.0 972,209 + PfGW456L13_865 0.78 +0.2 972,210 - PfGW456L13_865 0.78 +0.3 972,260 + PfGW456L13_865 0.81 -0.2 972,260 + PfGW456L13_865 0.81 +0.8 972,260 + PfGW456L13_865 0.81 -0.8 972,260 + PfGW456L13_865 0.81 +0.1 972,261 - PfGW456L13_865 0.81 -0.2 972,261 - PfGW456L13_865 0.81 -0.8 972,261 - PfGW456L13_865 0.81 -0.4 972,261 - PfGW456L13_865 0.81 +1.7 972,261 - PfGW456L13_865 0.81 -0.8 972,282 - PfGW456L13_865 0.82 -0.0 972,482 + -0.5 972,483 - -2.0 972,483 - +0.1 972,483 - -0.9 972,483 - +0.3 972,483 - -0.6 972,483 - +0.4 972,483 - -0.9 972,483 - +0.2 972,483 - +0.2 972,483 - -0.5 972,686 + -0.9 972,715 + PfGW456L13_866 0.15 -3.3 972,715 + PfGW456L13_866 0.15 +0.8 972,716 - PfGW456L13_866 0.15 +0.1 972,995 + PfGW456L13_866 0.63 -0.3 972,995 + PfGW456L13_866 0.63 -0.3 972,995 + PfGW456L13_866 0.63 +0.1 972,995 + PfGW456L13_866 0.63 -0.7 973,073 - PfGW456L13_866 0.76 +0.6 973,229 + +0.1 973,229 + -1.5 973,360 + +0.2 973,361 - -0.0 973,361 - -0.1 973,396 + -0.1 973,396 + -0.9 973,396 + +0.6 973,396 + -0.6 973,396 + +0.5 973,396 + +1.0 973,397 - +1.3 973,397 - +0.1 973,397 - -0.8 973,397 - +0.5 973,401 + +0.5 973,401 + +0.1 973,402 - +0.5 973,402 - -0.7 973,402 - -0.2 973,402 - -1.4 973,535 + PfGW456L13_867 0.16 -0.7 973,535 + PfGW456L13_867 0.16 +0.3
Or see this region's nucleotide sequence