Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_787

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_786 and PfGW456L13_787 are separated by 106 nucleotidesPfGW456L13_787 and PfGW456L13_788 are separated by 81 nucleotidesPfGW456L13_788 and PfGW456L13_789 are separated by 24 nucleotidesPfGW456L13_789 and PfGW456L13_790 overlap by 36 nucleotides PfGW456L13_786 - Sodium/glutamate symport protein, at 889,671 to 890,879 _786 PfGW456L13_787 - Exodeoxyribonuclease III (EC 3.1.11.2), at 890,986 to 891,765 _787 PfGW456L13_788 - Orotate phosphoribosyltransferase (EC 2.4.2.10), at 891,847 to 892,491 _788 PfGW456L13_789 - hypothetical protein, at 892,516 to 892,659 _789 PfGW456L13_790 - hypothetical protein, at 892,624 to 893,007 _790 Position (kb) 890 891 892Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 890.105 kb on + strand, within PfGW456L13_786at 890.105 kb on + strand, within PfGW456L13_786at 890.106 kb on - strand, within PfGW456L13_786at 890.106 kb on - strand, within PfGW456L13_786at 890.106 kb on - strand, within PfGW456L13_786at 890.106 kb on - strand, within PfGW456L13_786at 890.121 kb on + strand, within PfGW456L13_786at 890.121 kb on + strand, within PfGW456L13_786at 890.121 kb on + strand, within PfGW456L13_786at 890.121 kb on + strand, within PfGW456L13_786at 890.122 kb on - strand, within PfGW456L13_786at 890.122 kb on - strand, within PfGW456L13_786at 890.122 kb on - strand, within PfGW456L13_786at 890.227 kb on + strand, within PfGW456L13_786at 890.227 kb on + strand, within PfGW456L13_786at 890.227 kb on + strand, within PfGW456L13_786at 890.227 kb on + strand, within PfGW456L13_786at 890.228 kb on - strand, within PfGW456L13_786at 890.228 kb on - strand, within PfGW456L13_786at 890.228 kb on - strand, within PfGW456L13_786at 890.228 kb on - strand, within PfGW456L13_786at 890.233 kb on + strand, within PfGW456L13_786at 890.233 kb on + strand, within PfGW456L13_786at 890.233 kb on + strand, within PfGW456L13_786at 890.364 kb on - strand, within PfGW456L13_786at 890.364 kb on - strand, within PfGW456L13_786at 890.364 kb on - strand, within PfGW456L13_786at 890.364 kb on - strand, within PfGW456L13_786at 890.364 kb on - strand, within PfGW456L13_786at 890.364 kb on - strand, within PfGW456L13_786at 890.437 kb on + strand, within PfGW456L13_786at 890.437 kb on + strand, within PfGW456L13_786at 890.437 kb on + strand, within PfGW456L13_786at 890.438 kb on - strand, within PfGW456L13_786at 890.438 kb on - strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.472 kb on + strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.473 kb on - strand, within PfGW456L13_786at 890.660 kb on + strand, within PfGW456L13_786at 890.660 kb on + strand, within PfGW456L13_786at 890.660 kb on + strand, within PfGW456L13_786at 890.661 kb on - strand, within PfGW456L13_786at 890.661 kb on - strand, within PfGW456L13_786at 890.663 kb on + strand, within PfGW456L13_786at 890.663 kb on + strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.664 kb on - strand, within PfGW456L13_786at 890.667 kb on + strand, within PfGW456L13_786at 890.667 kb on + strand, within PfGW456L13_786at 890.667 kb on + strand, within PfGW456L13_786at 890.667 kb on + strand, within PfGW456L13_786at 890.667 kb on + strand, within PfGW456L13_786at 890.667 kb on + strand, within PfGW456L13_786at 890.668 kb on - strand, within PfGW456L13_786at 890.668 kb on - strand, within PfGW456L13_786at 890.668 kb on - strand, within PfGW456L13_786at 890.668 kb on - strand, within PfGW456L13_786at 890.668 kb on - strand, within PfGW456L13_786at 890.681 kb on - strand, within PfGW456L13_786at 890.736 kb on - strand, within PfGW456L13_786at 890.760 kb on + strandat 890.761 kb on - strandat 890.777 kb on - strandat 890.777 kb on - strandat 890.777 kb on - strandat 890.825 kb on + strandat 890.826 kb on - strandat 890.826 kb on - strandat 890.826 kb on - strandat 890.826 kb on - strandat 890.826 kb on - strandat 890.826 kb on - strandat 890.826 kb on - strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.847 kb on + strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.848 kb on - strandat 890.906 kb on + strandat 890.907 kb on - strandat 890.907 kb on - strandat 890.915 kb on + strandat 890.915 kb on + strandat 890.928 kb on + strandat 890.929 kb on - strandat 890.929 kb on - strandat 890.929 kb on - strandat 890.966 kb on - strandat 890.987 kb on + strandat 890.987 kb on + strandat 890.987 kb on + strandat 890.988 kb on - strandat 890.988 kb on - strandat 890.988 kb on - strandat 890.988 kb on - strandat 891.009 kb on - strandat 891.009 kb on - strandat 891.070 kb on + strand, within PfGW456L13_787at 891.071 kb on - strand, within PfGW456L13_787at 891.105 kb on - strand, within PfGW456L13_787at 891.164 kb on + strand, within PfGW456L13_787at 891.164 kb on + strand, within PfGW456L13_787at 891.165 kb on - strand, within PfGW456L13_787at 891.165 kb on - strand, within PfGW456L13_787at 891.165 kb on - strand, within PfGW456L13_787at 891.206 kb on + strand, within PfGW456L13_787at 891.207 kb on - strand, within PfGW456L13_787at 891.318 kb on - strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.332 kb on + strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.333 kb on - strand, within PfGW456L13_787at 891.371 kb on + strand, within PfGW456L13_787at 891.372 kb on - strand, within PfGW456L13_787at 891.372 kb on - strand, within PfGW456L13_787at 891.456 kb on + strand, within PfGW456L13_787at 891.456 kb on + strand, within PfGW456L13_787at 891.457 kb on - strand, within PfGW456L13_787at 891.486 kb on - strand, within PfGW456L13_787at 891.555 kb on - strand, within PfGW456L13_787at 891.599 kb on + strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.600 kb on - strand, within PfGW456L13_787at 891.608 kb on + strand, within PfGW456L13_787at 891.608 kb on + strand, within PfGW456L13_787at 891.608 kb on + strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.609 kb on - strand, within PfGW456L13_787at 891.735 kb on + strandat 891.793 kb on - strandat 891.793 kb on - strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.812 kb on + strandat 891.816 kb on + strandat 891.816 kb on + strandat 891.831 kb on + strandat 891.944 kb on - strand, within PfGW456L13_788at 892.506 kb on - strandat 892.506 kb on - strandat 892.506 kb on - strandat 892.506 kb on - strandat 892.599 kb on + strand, within PfGW456L13_789at 892.599 kb on + strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.600 kb on - strand, within PfGW456L13_789at 892.708 kb on + strand, within PfGW456L13_790at 892.708 kb on + strand, within PfGW456L13_790at 892.708 kb on + strand, within PfGW456L13_790at 892.709 kb on - strand, within PfGW456L13_790at 892.709 kb on - strand, within PfGW456L13_790at 892.715 kb on + strand, within PfGW456L13_790at 892.716 kb on - strand, within PfGW456L13_790

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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890,105 + PfGW456L13_786 0.36 +0.8
890,105 + PfGW456L13_786 0.36 -0.0
890,106 - PfGW456L13_786 0.36 +1.8
890,106 - PfGW456L13_786 0.36 +0.3
890,106 - PfGW456L13_786 0.36 -0.9
890,106 - PfGW456L13_786 0.36 +0.7
890,121 + PfGW456L13_786 0.37 +0.1
890,121 + PfGW456L13_786 0.37 +1.8
890,121 + PfGW456L13_786 0.37 +0.9
890,121 + PfGW456L13_786 0.37 +1.0
890,122 - PfGW456L13_786 0.37 -0.6
890,122 - PfGW456L13_786 0.37 -0.5
890,122 - PfGW456L13_786 0.37 -1.1
890,227 + PfGW456L13_786 0.46 +0.2
890,227 + PfGW456L13_786 0.46 -0.2
890,227 + PfGW456L13_786 0.46 +0.4
890,227 + PfGW456L13_786 0.46 +0.6
890,228 - PfGW456L13_786 0.46 +1.6
890,228 - PfGW456L13_786 0.46 -1.9
890,228 - PfGW456L13_786 0.46 +0.2
890,228 - PfGW456L13_786 0.46 -0.8
890,233 + PfGW456L13_786 0.46 -2.1
890,233 + PfGW456L13_786 0.46 +0.6
890,233 + PfGW456L13_786 0.46 -1.1
890,364 - PfGW456L13_786 0.57 -0.5
890,364 - PfGW456L13_786 0.57 +0.3
890,364 - PfGW456L13_786 0.57 -0.3
890,364 - PfGW456L13_786 0.57 -0.2
890,364 - PfGW456L13_786 0.57 -0.8
890,364 - PfGW456L13_786 0.57 -0.6
890,437 + PfGW456L13_786 0.63 +0.4
890,437 + PfGW456L13_786 0.63 -0.3
890,437 + PfGW456L13_786 0.63 +1.2
890,438 - PfGW456L13_786 0.63 +0.5
890,438 - PfGW456L13_786 0.63 +0.8
890,472 + PfGW456L13_786 0.66 -1.0
890,472 + PfGW456L13_786 0.66 +0.1
890,472 + PfGW456L13_786 0.66 -0.1
890,472 + PfGW456L13_786 0.66 -0.5
890,472 + PfGW456L13_786 0.66 +0.7
890,472 + PfGW456L13_786 0.66 +0.4
890,472 + PfGW456L13_786 0.66 -0.3
890,472 + PfGW456L13_786 0.66 -1.4
890,472 + PfGW456L13_786 0.66 +0.5
890,472 + PfGW456L13_786 0.66 +0.4
890,473 - PfGW456L13_786 0.66 -1.0
890,473 - PfGW456L13_786 0.66 +1.1
890,473 - PfGW456L13_786 0.66 -0.3
890,473 - PfGW456L13_786 0.66 +0.6
890,473 - PfGW456L13_786 0.66 +1.2
890,473 - PfGW456L13_786 0.66 +0.6
890,473 - PfGW456L13_786 0.66 +0.0
890,473 - PfGW456L13_786 0.66 -0.3
890,660 + PfGW456L13_786 0.82 +0.5
890,660 + PfGW456L13_786 0.82 +0.0
890,660 + PfGW456L13_786 0.82 +0.4
890,661 - PfGW456L13_786 0.82 +0.5
890,661 - PfGW456L13_786 0.82 -0.8
890,663 + PfGW456L13_786 0.82 -1.8
890,663 + PfGW456L13_786 0.82 +1.2
890,664 - PfGW456L13_786 0.82 +1.8
890,664 - PfGW456L13_786 0.82 +0.7
890,664 - PfGW456L13_786 0.82 +2.2
890,664 - PfGW456L13_786 0.82 -1.4
890,664 - PfGW456L13_786 0.82 -1.8
890,664 - PfGW456L13_786 0.82 +0.1
890,664 - PfGW456L13_786 0.82 -0.8
890,664 - PfGW456L13_786 0.82 +2.3
890,667 + PfGW456L13_786 0.82 +0.7
890,667 + PfGW456L13_786 0.82 +0.9
890,667 + PfGW456L13_786 0.82 +0.3
890,667 + PfGW456L13_786 0.82 +0.7
890,667 + PfGW456L13_786 0.82 +0.9
890,667 + PfGW456L13_786 0.82 +0.2
890,668 - PfGW456L13_786 0.82 +0.5
890,668 - PfGW456L13_786 0.82 +0.1
890,668 - PfGW456L13_786 0.82 +0.5
890,668 - PfGW456L13_786 0.82 +0.9
890,668 - PfGW456L13_786 0.82 +0.4
890,681 - PfGW456L13_786 0.84 -0.7
890,736 - PfGW456L13_786 0.88 +0.5
890,760 + +0.7
890,761 - -0.1
890,777 - +0.4
890,777 - +0.2
890,777 - -0.5
890,825 + -0.6
890,826 - -0.4
890,826 - -0.3
890,826 - +1.0
890,826 - +0.7
890,826 - +0.3
890,826 - +0.3
890,826 - -0.1
890,847 + +0.7
890,847 + +1.0
890,847 + -0.2
890,847 + -0.3
890,847 + +0.5
890,848 - -1.6
890,848 - +0.3
890,848 - +1.1
890,848 - +0.0
890,848 - +0.5
890,906 + -0.6
890,907 - +1.6
890,907 - -0.1
890,915 + +0.9
890,915 + -0.5
890,928 + +1.8
890,929 - +0.8
890,929 - +1.5
890,929 - +1.2
890,966 - +0.7
890,987 + +0.6
890,987 + +1.6
890,987 + -0.4
890,988 - +0.6
890,988 - +0.7
890,988 - +0.7
890,988 - -0.0
891,009 - -3.9
891,009 - -1.6
891,070 + PfGW456L13_787 0.11 -1.1
891,071 - PfGW456L13_787 0.11 -3.9
891,105 - PfGW456L13_787 0.15 -2.4
891,164 + PfGW456L13_787 0.23 -0.3
891,164 + PfGW456L13_787 0.23 -1.6
891,165 - PfGW456L13_787 0.23 -3.1
891,165 - PfGW456L13_787 0.23 -1.0
891,165 - PfGW456L13_787 0.23 -1.4
891,206 + PfGW456L13_787 0.28 -2.0
891,207 - PfGW456L13_787 0.28 -2.3
891,318 - PfGW456L13_787 0.43 +0.6
891,332 + PfGW456L13_787 0.44 -1.4
891,332 + PfGW456L13_787 0.44 -0.8
891,332 + PfGW456L13_787 0.44 -0.7
891,332 + PfGW456L13_787 0.44 -2.4
891,332 + PfGW456L13_787 0.44 -1.6
891,332 + PfGW456L13_787 0.44 -2.0
891,333 - PfGW456L13_787 0.44 -1.8
891,333 - PfGW456L13_787 0.44 -2.8
891,333 - PfGW456L13_787 0.44 -1.7
891,333 - PfGW456L13_787 0.44 -2.4
891,333 - PfGW456L13_787 0.44 -1.7
891,333 - PfGW456L13_787 0.44 -1.4
891,371 + PfGW456L13_787 0.49 -1.1
891,372 - PfGW456L13_787 0.49 -3.7
891,372 - PfGW456L13_787 0.49 -3.2
891,456 + PfGW456L13_787 0.60 -1.9
891,456 + PfGW456L13_787 0.60 -0.8
891,457 - PfGW456L13_787 0.60 -2.4
891,486 - PfGW456L13_787 0.64 -2.0
891,555 - PfGW456L13_787 0.73 -1.8
891,599 + PfGW456L13_787 0.79 -1.8
891,600 - PfGW456L13_787 0.79 -1.0
891,600 - PfGW456L13_787 0.79 -3.5
891,600 - PfGW456L13_787 0.79 +0.1
891,600 - PfGW456L13_787 0.79 -2.0
891,600 - PfGW456L13_787 0.79 -3.1
891,600 - PfGW456L13_787 0.79 -1.0
891,608 + PfGW456L13_787 0.80 -2.7
891,608 + PfGW456L13_787 0.80 -0.9
891,608 + PfGW456L13_787 0.80 -0.8
891,609 - PfGW456L13_787 0.80 -0.5
891,609 - PfGW456L13_787 0.80 +0.2
891,609 - PfGW456L13_787 0.80 -1.6
891,609 - PfGW456L13_787 0.80 -2.9
891,735 + -1.5
891,793 - -1.0
891,793 - -2.1
891,812 + -2.0
891,812 + -3.2
891,812 + -0.2
891,812 + -1.8
891,812 + -0.7
891,812 + -1.5
891,812 + -1.6
891,812 + -0.6
891,816 + +1.1
891,816 + +0.7
891,831 + +1.8
891,944 - PfGW456L13_788 0.15 -1.6
892,506 - -0.5
892,506 - +0.2
892,506 - +0.2
892,506 - +1.0
892,599 + PfGW456L13_789 0.58 +0.4
892,599 + PfGW456L13_789 0.58 -0.4
892,600 - PfGW456L13_789 0.58 +0.1
892,600 - PfGW456L13_789 0.58 +0.6
892,600 - PfGW456L13_789 0.58 -0.1
892,600 - PfGW456L13_789 0.58 +1.1
892,708 + PfGW456L13_790 0.22 -0.1
892,708 + PfGW456L13_790 0.22 +0.3
892,708 + PfGW456L13_790 0.22 +0.4
892,709 - PfGW456L13_790 0.22 +0.4
892,709 - PfGW456L13_790 0.22 +0.4
892,715 + PfGW456L13_790 0.24 -2.3
892,716 - PfGW456L13_790 0.24 -1.0

Or see this region's nucleotide sequence