Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_779

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_777 and PfGW456L13_778 are separated by 138 nucleotidesPfGW456L13_778 and PfGW456L13_779 are separated by 67 nucleotidesPfGW456L13_779 and PfGW456L13_780 are separated by 24 nucleotides PfGW456L13_777 - Nucleoside-diphosphate-sugar epimerases, at 881,590 to 882,447 _777 PfGW456L13_778 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 882,586 to 883,326 _778 PfGW456L13_779 - Bona fide RidA/YjgF/TdcF/RutC subgroup, at 883,394 to 883,774 _779 PfGW456L13_780 - GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II / Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2), at 883,799 to 885,904 _780 Position (kb) 883 884Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 882.398 kb on - strandat 882.461 kb on + strandat 882.462 kb on - strandat 882.500 kb on + strandat 882.500 kb on + strandat 882.501 kb on - strandat 882.501 kb on - strandat 882.526 kb on + strandat 882.526 kb on + strandat 882.527 kb on - strandat 882.527 kb on - strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.587 kb on + strandat 882.588 kb on - strandat 882.588 kb on - strandat 882.626 kb on + strandat 882.627 kb on - strandat 882.627 kb on - strandat 882.791 kb on + strand, within PfGW456L13_778at 882.792 kb on - strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.893 kb on + strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.894 kb on - strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.902 kb on + strand, within PfGW456L13_778at 882.903 kb on - strand, within PfGW456L13_778at 882.903 kb on - strand, within PfGW456L13_778at 882.959 kb on - strand, within PfGW456L13_778at 883.050 kb on - strand, within PfGW456L13_778at 883.050 kb on - strand, within PfGW456L13_778at 883.121 kb on + strand, within PfGW456L13_778at 883.172 kb on + strand, within PfGW456L13_778at 883.352 kb on - strandat 883.389 kb on - strandat 883.395 kb on + strandat 883.395 kb on + strandat 883.395 kb on + strandat 883.396 kb on - strandat 883.491 kb on + strand, within PfGW456L13_779at 883.491 kb on + strand, within PfGW456L13_779at 883.491 kb on + strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.492 kb on - strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.689 kb on + strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.690 kb on - strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.722 kb on + strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.723 kb on - strand, within PfGW456L13_779at 883.727 kb on - strand, within PfGW456L13_779at 883.727 kb on - strand, within PfGW456L13_779at 883.759 kb on + strandat 883.776 kb on + strandat 883.776 kb on + strandat 883.776 kb on + strandat 883.776 kb on - strandat 883.777 kb on - strandat 883.777 kb on - strandat 883.777 kb on - strandat 883.777 kb on - strandat 883.788 kb on + strandat 883.788 kb on + strandat 883.788 kb on + strandat 883.788 kb on + strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.789 kb on - strandat 883.792 kb on + strandat 883.792 kb on + strandat 883.801 kb on - strandat 884.295 kb on + strand, within PfGW456L13_780

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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882,398 - +0.9
882,461 + -0.1
882,462 - -0.5
882,500 + +0.9
882,500 + +0.5
882,501 - +0.4
882,501 - -0.3
882,526 + +0.2
882,526 + -0.5
882,527 - -1.0
882,527 - -0.6
882,587 + +0.1
882,587 + +0.2
882,587 + +0.5
882,587 + -0.2
882,588 - -0.3
882,588 - +0.5
882,626 + -0.7
882,627 - -0.2
882,627 - -0.6
882,791 + PfGW456L13_778 0.28 -2.1
882,792 - PfGW456L13_778 0.28 -1.5
882,893 + PfGW456L13_778 0.41 -0.2
882,893 + PfGW456L13_778 0.41 -1.1
882,893 + PfGW456L13_778 0.41 -0.6
882,893 + PfGW456L13_778 0.41 -0.2
882,893 + PfGW456L13_778 0.41 -1.0
882,893 + PfGW456L13_778 0.41 -0.2
882,893 + PfGW456L13_778 0.41 -0.7
882,894 - PfGW456L13_778 0.42 -1.3
882,894 - PfGW456L13_778 0.42 -0.8
882,894 - PfGW456L13_778 0.42 -1.5
882,894 - PfGW456L13_778 0.42 -1.4
882,894 - PfGW456L13_778 0.42 -0.4
882,894 - PfGW456L13_778 0.42 -0.5
882,902 + PfGW456L13_778 0.43 -1.4
882,902 + PfGW456L13_778 0.43 -2.3
882,902 + PfGW456L13_778 0.43 +0.2
882,903 - PfGW456L13_778 0.43 -0.6
882,903 - PfGW456L13_778 0.43 -0.9
882,959 - PfGW456L13_778 0.50 -0.6
883,050 - PfGW456L13_778 0.63 -0.6
883,050 - PfGW456L13_778 0.63 -2.0
883,121 + PfGW456L13_778 0.72 -1.1
883,172 + PfGW456L13_778 0.79 -1.6
883,352 - -0.2
883,389 - +0.2
883,395 + -1.7
883,395 + -0.4
883,395 + +0.8
883,396 - +0.3
883,491 + PfGW456L13_779 0.25 -1.8
883,491 + PfGW456L13_779 0.25 -1.0
883,491 + PfGW456L13_779 0.25 -2.3
883,492 - PfGW456L13_779 0.26 -0.8
883,492 - PfGW456L13_779 0.26 +0.9
883,492 - PfGW456L13_779 0.26 -1.4
883,492 - PfGW456L13_779 0.26 -0.8
883,492 - PfGW456L13_779 0.26 -0.8
883,689 + PfGW456L13_779 0.77 -2.3
883,689 + PfGW456L13_779 0.77 -1.2
883,689 + PfGW456L13_779 0.77 -0.4
883,689 + PfGW456L13_779 0.77 -2.8
883,689 + PfGW456L13_779 0.77 -3.0
883,689 + PfGW456L13_779 0.77 -1.6
883,689 + PfGW456L13_779 0.77 -1.4
883,689 + PfGW456L13_779 0.77 -1.2
883,689 + PfGW456L13_779 0.77 +0.2
883,689 + PfGW456L13_779 0.77 +0.2
883,690 - PfGW456L13_779 0.78 -1.7
883,690 - PfGW456L13_779 0.78 -0.8
883,690 - PfGW456L13_779 0.78 -1.6
883,690 - PfGW456L13_779 0.78 -0.2
883,690 - PfGW456L13_779 0.78 -0.4
883,690 - PfGW456L13_779 0.78 -2.0
883,690 - PfGW456L13_779 0.78 -0.3
883,690 - PfGW456L13_779 0.78 -0.4
883,690 - PfGW456L13_779 0.78 -3.3
883,690 - PfGW456L13_779 0.78 -0.8
883,690 - PfGW456L13_779 0.78 +0.4
883,690 - PfGW456L13_779 0.78 -0.9
883,690 - PfGW456L13_779 0.78 -0.9
883,722 + PfGW456L13_779 0.86 -1.2
883,722 + PfGW456L13_779 0.86 -1.2
883,722 + PfGW456L13_779 0.86 -0.8
883,722 + PfGW456L13_779 0.86 -1.0
883,722 + PfGW456L13_779 0.86 -2.2
883,722 + PfGW456L13_779 0.86 -2.2
883,723 - PfGW456L13_779 0.86 -1.8
883,723 - PfGW456L13_779 0.86 -1.6
883,723 - PfGW456L13_779 0.86 +0.4
883,723 - PfGW456L13_779 0.86 -1.8
883,723 - PfGW456L13_779 0.86 -1.6
883,723 - PfGW456L13_779 0.86 -1.5
883,723 - PfGW456L13_779 0.86 -0.7
883,727 - PfGW456L13_779 0.87 -1.1
883,727 - PfGW456L13_779 0.87 -1.6
883,759 + -3.2
883,776 + +1.2
883,776 + -0.3
883,776 + -1.8
883,776 - -0.4
883,777 - -1.2
883,777 - -1.4
883,777 - +0.4
883,777 - -1.0
883,788 + -1.1
883,788 + -1.8
883,788 + -4.1
883,788 + -1.8
883,789 - +2.8
883,789 - -0.5
883,789 - -0.5
883,789 - +0.5
883,789 - -0.4
883,789 - -0.0
883,792 + -0.3
883,792 + -0.8
883,801 - +0.3
884,295 + PfGW456L13_780 0.24 -1.0

Or see this region's nucleotide sequence