Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_773

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_772 and PfGW456L13_773 are separated by 9 nucleotidesPfGW456L13_773 and PfGW456L13_774 are separated by 283 nucleotides PfGW456L13_772 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 875,951 to 878,026 _772 PfGW456L13_773 - Hydrogen peroxide-inducible genes activator, at 878,036 to 878,965 _773 PfGW456L13_774 - Ferric siderophore transport system, periplasmic binding protein TonB, at 879,249 to 879,950 _774 Position (kb) 878 879Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 877.246 kb on - strand, within PfGW456L13_772at 877.264 kb on + strand, within PfGW456L13_772at 877.429 kb on - strand, within PfGW456L13_772at 877.462 kb on - strand, within PfGW456L13_772at 877.579 kb on - strand, within PfGW456L13_772at 877.647 kb on + strand, within PfGW456L13_772at 877.647 kb on + strand, within PfGW456L13_772at 877.647 kb on + strand, within PfGW456L13_772at 877.647 kb on + strand, within PfGW456L13_772at 877.743 kb on + strand, within PfGW456L13_772at 877.743 kb on + strand, within PfGW456L13_772at 877.743 kb on + strand, within PfGW456L13_772at 877.744 kb on - strand, within PfGW456L13_772at 877.744 kb on - strand, within PfGW456L13_772at 877.787 kb on + strand, within PfGW456L13_772at 877.787 kb on + strand, within PfGW456L13_772at 877.788 kb on - strand, within PfGW456L13_772at 877.788 kb on - strand, within PfGW456L13_772at 878.469 kb on + strand, within PfGW456L13_773at 878.469 kb on + strand, within PfGW456L13_773at 878.469 kb on + strand, within PfGW456L13_773at 878.470 kb on - strand, within PfGW456L13_773at 878.470 kb on - strand, within PfGW456L13_773at 878.470 kb on - strand, within PfGW456L13_773at 878.485 kb on - strand, within PfGW456L13_773at 878.598 kb on + strand, within PfGW456L13_773at 878.598 kb on + strand, within PfGW456L13_773at 878.598 kb on + strand, within PfGW456L13_773at 878.599 kb on - strand, within PfGW456L13_773at 878.599 kb on - strand, within PfGW456L13_773at 878.599 kb on - strand, within PfGW456L13_773at 878.599 kb on - strand, within PfGW456L13_773at 878.599 kb on - strand, within PfGW456L13_773at 878.656 kb on - strand, within PfGW456L13_773at 878.656 kb on - strand, within PfGW456L13_773at 878.670 kb on + strand, within PfGW456L13_773at 878.670 kb on + strand, within PfGW456L13_773at 878.670 kb on + strand, within PfGW456L13_773at 878.670 kb on + strand, within PfGW456L13_773at 878.754 kb on - strand, within PfGW456L13_773at 878.943 kb on + strandat 878.943 kb on + strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.944 kb on - strandat 878.948 kb on + strandat 878.948 kb on + strandat 878.948 kb on + strandat 878.949 kb on - strandat 878.949 kb on - strandat 878.949 kb on - strandat 878.949 kb on - strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.965 kb on + strandat 878.966 kb on - strandat 878.966 kb on - strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.980 kb on + strandat 878.981 kb on - strandat 878.981 kb on - strandat 878.981 kb on - strandat 878.981 kb on - strandat 879.080 kb on - strandat 879.203 kb on - strandat 879.203 kb on - strandat 879.242 kb on + strandat 879.243 kb on - strandat 879.243 kb on - strandat 879.243 kb on - strandat 879.243 kb on - strandat 879.250 kb on + strandat 879.251 kb on - strandat 879.251 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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877,246 - PfGW456L13_772 0.62 -1.8
877,264 + PfGW456L13_772 0.63 -3.6
877,429 - PfGW456L13_772 0.71 -1.6
877,462 - PfGW456L13_772 0.73 -1.3
877,579 - PfGW456L13_772 0.78 -1.6
877,647 + PfGW456L13_772 0.82 -1.2
877,647 + PfGW456L13_772 0.82 -1.2
877,647 + PfGW456L13_772 0.82 -2.4
877,647 + PfGW456L13_772 0.82 -1.3
877,743 + PfGW456L13_772 0.86 -2.5
877,743 + PfGW456L13_772 0.86 -2.3
877,743 + PfGW456L13_772 0.86 +1.2
877,744 - PfGW456L13_772 0.86 -1.9
877,744 - PfGW456L13_772 0.86 -3.7
877,787 + PfGW456L13_772 0.88 -3.6
877,787 + PfGW456L13_772 0.88 -2.9
877,788 - PfGW456L13_772 0.88 -0.5
877,788 - PfGW456L13_772 0.88 -0.4
878,469 + PfGW456L13_773 0.47 -1.8
878,469 + PfGW456L13_773 0.47 -2.6
878,469 + PfGW456L13_773 0.47 -1.6
878,470 - PfGW456L13_773 0.47 -3.0
878,470 - PfGW456L13_773 0.47 -2.7
878,470 - PfGW456L13_773 0.47 -3.5
878,485 - PfGW456L13_773 0.48 -3.2
878,598 + PfGW456L13_773 0.60 -1.4
878,598 + PfGW456L13_773 0.60 -3.4
878,598 + PfGW456L13_773 0.60 -1.1
878,599 - PfGW456L13_773 0.61 -2.4
878,599 - PfGW456L13_773 0.61 -3.2
878,599 - PfGW456L13_773 0.61 -3.5
878,599 - PfGW456L13_773 0.61 -1.4
878,599 - PfGW456L13_773 0.61 -0.4
878,656 - PfGW456L13_773 0.67 -4.0
878,656 - PfGW456L13_773 0.67 -4.7
878,670 + PfGW456L13_773 0.68 -0.5
878,670 + PfGW456L13_773 0.68 -3.0
878,670 + PfGW456L13_773 0.68 -2.5
878,670 + PfGW456L13_773 0.68 -1.4
878,754 - PfGW456L13_773 0.77 -3.8
878,943 + -3.6
878,943 + -2.6
878,944 - -2.6
878,944 - -3.0
878,944 - -3.7
878,944 - -4.3
878,944 - -1.2
878,944 - -1.8
878,944 - -1.5
878,944 - -2.5
878,948 + -3.4
878,948 + -2.4
878,948 + -2.5
878,949 - -3.4
878,949 - -2.2
878,949 - -2.7
878,949 - -3.0
878,965 + -2.9
878,965 + -1.6
878,965 + -1.9
878,965 + -2.2
878,965 + -2.5
878,965 + -0.8
878,965 + -2.5
878,965 + -2.8
878,966 - -0.5
878,966 - -2.3
878,980 + -3.2
878,980 + -2.5
878,980 + -2.2
878,980 + -1.8
878,980 + -2.7
878,980 + -0.8
878,980 + +0.2
878,980 + -2.4
878,980 + -2.0
878,980 + -4.7
878,981 - +0.4
878,981 - -1.6
878,981 - +0.1
878,981 - +0.1
879,080 - -0.7
879,203 - -0.5
879,203 - +0.6
879,242 + +0.2
879,243 - -0.1
879,243 - +1.4
879,243 - -0.4
879,243 - +0.4
879,250 + +0.8
879,251 - -1.4
879,251 - -0.3

Or see this region's nucleotide sequence