Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_771 and PfGW456L13_772 are separated by 78 nucleotides PfGW456L13_772 and PfGW456L13_773 are separated by 9 nucleotides
PfGW456L13_771 - Predicted signal transduction protein, at 874,469 to 875,872
_771
PfGW456L13_772 - ATP-dependent DNA helicase RecG (EC 3.6.1.-), at 875,951 to 878,026
_772
PfGW456L13_773 - Hydrogen peroxide-inducible genes activator, at 878,036 to 878,965
_773
Position (kb) 875
876
877
878
879 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 874.986 kb on + strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.986 kb on + strand, within PfGW456L13_771 at 874.987 kb on - strand, within PfGW456L13_771 at 874.987 kb on - strand, within PfGW456L13_771 at 875.005 kb on - strand, within PfGW456L13_771 at 875.148 kb on + strand, within PfGW456L13_771 at 875.148 kb on + strand, within PfGW456L13_771 at 875.148 kb on + strand, within PfGW456L13_771 at 875.149 kb on - strand, within PfGW456L13_771 at 875.152 kb on - strand, within PfGW456L13_771 at 875.320 kb on + strand, within PfGW456L13_771 at 875.542 kb on - strand, within PfGW456L13_771 at 875.711 kb on + strand, within PfGW456L13_771 at 875.712 kb on - strand, within PfGW456L13_771 at 875.790 kb on + strand at 875.791 kb on - strand at 875.880 kb on - strand at 875.889 kb on + strand at 875.889 kb on + strand at 875.889 kb on + strand at 875.889 kb on + strand at 875.890 kb on - strand at 875.890 kb on - strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.905 kb on + strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.906 kb on - strand at 875.907 kb on + strand at 875.907 kb on + strand at 875.907 kb on + strand at 875.964 kb on + strand at 875.965 kb on - strand at 875.965 kb on - strand at 875.965 kb on - strand at 876.104 kb on + strand at 876.104 kb on + strand at 876.104 kb on + strand at 876.105 kb on - strand at 876.105 kb on - strand at 876.105 kb on - strand at 876.105 kb on - strand at 876.240 kb on + strand, within PfGW456L13_772 at 876.240 kb on + strand, within PfGW456L13_772 at 876.241 kb on - strand, within PfGW456L13_772 at 876.241 kb on - strand, within PfGW456L13_772 at 876.241 kb on - strand, within PfGW456L13_772 at 876.241 kb on - strand, within PfGW456L13_772 at 876.241 kb on - strand, within PfGW456L13_772 at 876.711 kb on + strand, within PfGW456L13_772 at 876.819 kb on - strand, within PfGW456L13_772 at 877.246 kb on - strand, within PfGW456L13_772 at 877.264 kb on + strand, within PfGW456L13_772 at 877.429 kb on - strand, within PfGW456L13_772 at 877.462 kb on - strand, within PfGW456L13_772 at 877.579 kb on - strand, within PfGW456L13_772 at 877.647 kb on + strand, within PfGW456L13_772 at 877.647 kb on + strand, within PfGW456L13_772 at 877.647 kb on + strand, within PfGW456L13_772 at 877.647 kb on + strand, within PfGW456L13_772 at 877.743 kb on + strand, within PfGW456L13_772 at 877.743 kb on + strand, within PfGW456L13_772 at 877.743 kb on + strand, within PfGW456L13_772 at 877.744 kb on - strand, within PfGW456L13_772 at 877.744 kb on - strand, within PfGW456L13_772 at 877.787 kb on + strand, within PfGW456L13_772 at 877.787 kb on + strand, within PfGW456L13_772 at 877.788 kb on - strand, within PfGW456L13_772 at 877.788 kb on - strand, within PfGW456L13_772 at 878.469 kb on + strand, within PfGW456L13_773 at 878.469 kb on + strand, within PfGW456L13_773 at 878.469 kb on + strand, within PfGW456L13_773 at 878.470 kb on - strand, within PfGW456L13_773 at 878.470 kb on - strand, within PfGW456L13_773 at 878.470 kb on - strand, within PfGW456L13_773 at 878.485 kb on - strand, within PfGW456L13_773 at 878.598 kb on + strand, within PfGW456L13_773 at 878.598 kb on + strand, within PfGW456L13_773 at 878.598 kb on + strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.599 kb on - strand, within PfGW456L13_773 at 878.656 kb on - strand, within PfGW456L13_773 at 878.656 kb on - strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.670 kb on + strand, within PfGW456L13_773 at 878.754 kb on - strand, within PfGW456L13_773 at 878.943 kb on + strand at 878.943 kb on + strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.944 kb on - strand at 878.948 kb on + strand at 878.948 kb on + strand at 878.948 kb on + strand at 878.949 kb on - strand at 878.949 kb on - strand at 878.949 kb on - strand at 878.949 kb on - strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.965 kb on + strand at 878.966 kb on - strand at 878.966 kb on - strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.980 kb on + strand at 878.981 kb on - strand at 878.981 kb on - strand at 878.981 kb on - strand at 878.981 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 874,986 + PfGW456L13_771 0.37 -0.3 874,986 + PfGW456L13_771 0.37 -0.3 874,986 + PfGW456L13_771 0.37 -0.6 874,986 + PfGW456L13_771 0.37 -0.8 874,987 - PfGW456L13_771 0.37 -0.1 874,987 - PfGW456L13_771 0.37 -1.1 875,005 - PfGW456L13_771 0.38 +0.1 875,148 + PfGW456L13_771 0.48 -0.1 875,148 + PfGW456L13_771 0.48 +0.5 875,148 + PfGW456L13_771 0.48 -0.3 875,149 - PfGW456L13_771 0.48 +0.7 875,152 - PfGW456L13_771 0.49 -0.5 875,320 + PfGW456L13_771 0.61 -1.0 875,542 - PfGW456L13_771 0.76 +0.4 875,711 + PfGW456L13_771 0.88 -0.3 875,712 - PfGW456L13_771 0.89 -0.4 875,790 + -0.1 875,791 - +0.3 875,880 - +0.4 875,889 + +0.1 875,889 + -0.7 875,889 + +1.0 875,889 + +0.2 875,890 - -0.4 875,890 - +0.1 875,905 + -0.3 875,905 + +0.0 875,905 + -0.7 875,905 + -0.3 875,905 + -0.4 875,905 + -0.1 875,905 + +0.0 875,905 + -0.5 875,905 + -0.3 875,906 - +1.2 875,906 - +0.4 875,906 - +0.7 875,906 - +0.5 875,906 - -0.5 875,906 - -1.2 875,906 - -0.8 875,906 - +0.8 875,906 - +0.6 875,906 - +0.4 875,906 - -0.8 875,907 + -0.3 875,907 + -0.2 875,907 + -0.7 875,964 + -3.2 875,965 - -0.8 875,965 - -1.5 875,965 - -1.9 876,104 + -3.0 876,104 + -3.6 876,104 + -2.1 876,105 - -2.2 876,105 - -3.1 876,105 - -2.4 876,105 - -1.7 876,240 + PfGW456L13_772 0.14 -3.2 876,240 + PfGW456L13_772 0.14 -2.3 876,241 - PfGW456L13_772 0.14 -0.6 876,241 - PfGW456L13_772 0.14 -2.6 876,241 - PfGW456L13_772 0.14 -0.5 876,241 - PfGW456L13_772 0.14 -2.4 876,241 - PfGW456L13_772 0.14 -1.2 876,711 + PfGW456L13_772 0.37 -0.6 876,819 - PfGW456L13_772 0.42 -1.6 877,246 - PfGW456L13_772 0.62 -1.8 877,264 + PfGW456L13_772 0.63 -3.6 877,429 - PfGW456L13_772 0.71 -1.6 877,462 - PfGW456L13_772 0.73 -1.3 877,579 - PfGW456L13_772 0.78 -1.6 877,647 + PfGW456L13_772 0.82 -1.2 877,647 + PfGW456L13_772 0.82 -1.2 877,647 + PfGW456L13_772 0.82 -2.4 877,647 + PfGW456L13_772 0.82 -1.3 877,743 + PfGW456L13_772 0.86 -2.5 877,743 + PfGW456L13_772 0.86 -2.3 877,743 + PfGW456L13_772 0.86 +1.2 877,744 - PfGW456L13_772 0.86 -1.9 877,744 - PfGW456L13_772 0.86 -3.7 877,787 + PfGW456L13_772 0.88 -3.6 877,787 + PfGW456L13_772 0.88 -2.9 877,788 - PfGW456L13_772 0.88 -0.5 877,788 - PfGW456L13_772 0.88 -0.4 878,469 + PfGW456L13_773 0.47 -1.8 878,469 + PfGW456L13_773 0.47 -2.6 878,469 + PfGW456L13_773 0.47 -1.6 878,470 - PfGW456L13_773 0.47 -3.0 878,470 - PfGW456L13_773 0.47 -2.7 878,470 - PfGW456L13_773 0.47 -3.5 878,485 - PfGW456L13_773 0.48 -3.2 878,598 + PfGW456L13_773 0.60 -1.4 878,598 + PfGW456L13_773 0.60 -3.4 878,598 + PfGW456L13_773 0.60 -1.1 878,599 - PfGW456L13_773 0.61 -2.4 878,599 - PfGW456L13_773 0.61 -3.2 878,599 - PfGW456L13_773 0.61 -3.5 878,599 - PfGW456L13_773 0.61 -1.4 878,599 - PfGW456L13_773 0.61 -0.4 878,656 - PfGW456L13_773 0.67 -4.0 878,656 - PfGW456L13_773 0.67 -4.7 878,670 + PfGW456L13_773 0.68 -0.5 878,670 + PfGW456L13_773 0.68 -3.0 878,670 + PfGW456L13_773 0.68 -2.5 878,670 + PfGW456L13_773 0.68 -1.4 878,754 - PfGW456L13_773 0.77 -3.8 878,943 + -3.6 878,943 + -2.6 878,944 - -2.6 878,944 - -3.0 878,944 - -3.7 878,944 - -4.3 878,944 - -1.2 878,944 - -1.8 878,944 - -1.5 878,944 - -2.5 878,948 + -3.4 878,948 + -2.4 878,948 + -2.5 878,949 - -3.4 878,949 - -2.2 878,949 - -2.7 878,949 - -3.0 878,965 + -2.9 878,965 + -1.6 878,965 + -1.9 878,965 + -2.2 878,965 + -2.5 878,965 + -0.8 878,965 + -2.5 878,965 + -2.8 878,966 - -0.5 878,966 - -2.3 878,980 + -3.2 878,980 + -2.5 878,980 + -2.2 878,980 + -1.8 878,980 + -2.7 878,980 + -0.8 878,980 + +0.2 878,980 + -2.4 878,980 + -2.0 878,980 + -4.7 878,981 - +0.4 878,981 - -1.6 878,981 - +0.1 878,981 - +0.1
Or see this region's nucleotide sequence