Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_671 and PfGW456L13_672 overlap by 4 nucleotides PfGW456L13_672 and PfGW456L13_673 are separated by 57 nucleotides PfGW456L13_673 and PfGW456L13_674 are separated by 9 nucleotides
PfGW456L13_671 - tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA, at 763,742 to 765,640
_671
PfGW456L13_672 - rRNA small subunit 7-methylguanosine (m7G) methyltransferase GidB, at 765,637 to 766,281
_672
PfGW456L13_673 - Chromosome (plasmid) partitioning protein ParA, at 766,339 to 767,097
_673
PfGW456L13_674 - Chromosome (plasmid) partitioning protein ParB, at 767,107 to 767,979
_674
Position (kb) 766
767
768 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 765.756 kb on - strand, within PfGW456L13_672 at 765.772 kb on + strand, within PfGW456L13_672 at 765.773 kb on - strand, within PfGW456L13_672 at 765.773 kb on - strand, within PfGW456L13_672 at 765.773 kb on - strand, within PfGW456L13_672 at 765.891 kb on + strand, within PfGW456L13_672 at 765.891 kb on + strand, within PfGW456L13_672 at 765.891 kb on + strand, within PfGW456L13_672 at 766.018 kb on - strand, within PfGW456L13_672 at 766.018 kb on - strand, within PfGW456L13_672 at 766.104 kb on + strand, within PfGW456L13_672 at 766.105 kb on - strand, within PfGW456L13_672 at 766.105 kb on - strand, within PfGW456L13_672 at 766.181 kb on + strand, within PfGW456L13_672 at 766.311 kb on - strand at 766.444 kb on - strand, within PfGW456L13_673 at 766.452 kb on - strand, within PfGW456L13_673 at 766.452 kb on - strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.455 kb on + strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.456 kb on - strand, within PfGW456L13_673 at 766.543 kb on + strand, within PfGW456L13_673 at 766.654 kb on + strand, within PfGW456L13_673 at 766.654 kb on + strand, within PfGW456L13_673 at 766.654 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.660 kb on + strand, within PfGW456L13_673 at 766.661 kb on - strand, within PfGW456L13_673 at 766.661 kb on - strand, within PfGW456L13_673 at 766.661 kb on - strand, within PfGW456L13_673 at 766.735 kb on - strand, within PfGW456L13_673 at 766.735 kb on - strand, within PfGW456L13_673 at 766.753 kb on + strand, within PfGW456L13_673 at 766.753 kb on + strand, within PfGW456L13_673 at 766.754 kb on - strand, within PfGW456L13_673 at 766.788 kb on + strand, within PfGW456L13_673 at 766.800 kb on + strand, within PfGW456L13_673 at 766.800 kb on + strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.801 kb on - strand, within PfGW456L13_673 at 766.848 kb on + strand, within PfGW456L13_673 at 766.848 kb on + strand, within PfGW456L13_673 at 766.849 kb on - strand, within PfGW456L13_673 at 766.849 kb on - strand, within PfGW456L13_673 at 766.849 kb on - strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.855 kb on + strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.856 kb on - strand, within PfGW456L13_673 at 766.924 kb on + strand, within PfGW456L13_673 at 766.925 kb on - strand, within PfGW456L13_673 at 766.947 kb on + strand, within PfGW456L13_673 at 766.948 kb on - strand, within PfGW456L13_673 at 766.948 kb on - strand, within PfGW456L13_673 at 766.948 kb on - strand, within PfGW456L13_673 at 766.973 kb on - strand, within PfGW456L13_673 at 766.973 kb on - strand, within PfGW456L13_673 at 766.993 kb on + strand, within PfGW456L13_673 at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.095 kb on + strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.096 kb on - strand at 767.251 kb on + strand, within PfGW456L13_674 at 767.251 kb on + strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.252 kb on - strand, within PfGW456L13_674 at 767.444 kb on + strand, within PfGW456L13_674 at 767.444 kb on + strand, within PfGW456L13_674 at 767.445 kb on - strand, within PfGW456L13_674 at 767.799 kb on + strand, within PfGW456L13_674 at 767.901 kb on + strand at 767.910 kb on + strand at 767.932 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.960 kb on + strand at 767.970 kb on + strand at 768.015 kb on + strand at 768.030 kb on + strand at 768.048 kb on + strand at 768.050 kb on + strand at 768.050 kb on + strand at 768.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 765,756 - PfGW456L13_672 0.18 +1.4 765,772 + PfGW456L13_672 0.21 -0.6 765,773 - PfGW456L13_672 0.21 -0.8 765,773 - PfGW456L13_672 0.21 +0.2 765,773 - PfGW456L13_672 0.21 -2.0 765,891 + PfGW456L13_672 0.39 +0.4 765,891 + PfGW456L13_672 0.39 -0.4 765,891 + PfGW456L13_672 0.39 -0.1 766,018 - PfGW456L13_672 0.59 +0.9 766,018 - PfGW456L13_672 0.59 -1.1 766,104 + PfGW456L13_672 0.72 -0.1 766,105 - PfGW456L13_672 0.73 -1.2 766,105 - PfGW456L13_672 0.73 -1.7 766,181 + PfGW456L13_672 0.84 -1.1 766,311 - -2.9 766,444 - PfGW456L13_673 0.14 -0.2 766,452 - PfGW456L13_673 0.15 -2.7 766,452 - PfGW456L13_673 0.15 -3.4 766,455 + PfGW456L13_673 0.15 -2.5 766,455 + PfGW456L13_673 0.15 -1.4 766,455 + PfGW456L13_673 0.15 -1.8 766,455 + PfGW456L13_673 0.15 -1.1 766,456 - PfGW456L13_673 0.15 -0.3 766,456 - PfGW456L13_673 0.15 +1.4 766,456 - PfGW456L13_673 0.15 -1.3 766,456 - PfGW456L13_673 0.15 -0.8 766,543 + PfGW456L13_673 0.27 -1.6 766,654 + PfGW456L13_673 0.42 -0.3 766,654 + PfGW456L13_673 0.42 -1.1 766,654 + PfGW456L13_673 0.42 -1.0 766,660 + PfGW456L13_673 0.42 +0.6 766,660 + PfGW456L13_673 0.42 -2.1 766,660 + PfGW456L13_673 0.42 -1.4 766,660 + PfGW456L13_673 0.42 -1.0 766,661 - PfGW456L13_673 0.42 +1.2 766,661 - PfGW456L13_673 0.42 -0.9 766,661 - PfGW456L13_673 0.42 +1.4 766,735 - PfGW456L13_673 0.52 -1.3 766,735 - PfGW456L13_673 0.52 +0.8 766,753 + PfGW456L13_673 0.55 -1.8 766,753 + PfGW456L13_673 0.55 -0.1 766,754 - PfGW456L13_673 0.55 -1.4 766,788 + PfGW456L13_673 0.59 -2.3 766,800 + PfGW456L13_673 0.61 -2.4 766,800 + PfGW456L13_673 0.61 -1.0 766,801 - PfGW456L13_673 0.61 -2.0 766,801 - PfGW456L13_673 0.61 -1.4 766,801 - PfGW456L13_673 0.61 -1.5 766,801 - PfGW456L13_673 0.61 -0.3 766,801 - PfGW456L13_673 0.61 -2.0 766,848 + PfGW456L13_673 0.67 -0.8 766,848 + PfGW456L13_673 0.67 +0.6 766,849 - PfGW456L13_673 0.67 -0.7 766,849 - PfGW456L13_673 0.67 -0.5 766,849 - PfGW456L13_673 0.67 -2.1 766,855 + PfGW456L13_673 0.68 -1.4 766,855 + PfGW456L13_673 0.68 +0.2 766,855 + PfGW456L13_673 0.68 -2.0 766,855 + PfGW456L13_673 0.68 -1.5 766,855 + PfGW456L13_673 0.68 -3.0 766,856 - PfGW456L13_673 0.68 -2.0 766,856 - PfGW456L13_673 0.68 -1.6 766,856 - PfGW456L13_673 0.68 -1.5 766,856 - PfGW456L13_673 0.68 -1.4 766,924 + PfGW456L13_673 0.77 -1.9 766,925 - PfGW456L13_673 0.77 -1.5 766,947 + PfGW456L13_673 0.80 -1.8 766,948 - PfGW456L13_673 0.80 -2.1 766,948 - PfGW456L13_673 0.80 -0.4 766,948 - PfGW456L13_673 0.80 -1.1 766,973 - PfGW456L13_673 0.84 -0.2 766,973 - PfGW456L13_673 0.84 +0.3 766,993 + PfGW456L13_673 0.86 -0.8 767,095 + -1.5 767,095 + -0.8 767,095 + -2.0 767,095 + -1.1 767,095 + +0.2 767,095 + -0.5 767,096 - -2.8 767,096 - +0.2 767,096 - -0.7 767,096 - -0.2 767,096 - -1.3 767,096 - -1.8 767,251 + PfGW456L13_674 0.16 -1.1 767,251 + PfGW456L13_674 0.16 +0.1 767,252 - PfGW456L13_674 0.17 -1.3 767,252 - PfGW456L13_674 0.17 -0.6 767,252 - PfGW456L13_674 0.17 -2.0 767,252 - PfGW456L13_674 0.17 -1.2 767,252 - PfGW456L13_674 0.17 +0.4 767,444 + PfGW456L13_674 0.39 -1.1 767,444 + PfGW456L13_674 0.39 -1.8 767,445 - PfGW456L13_674 0.39 -2.0 767,799 + PfGW456L13_674 0.79 -1.3 767,901 + -1.4 767,910 + -2.3 767,932 + +0.3 767,960 + +0.1 767,960 + +0.7 767,960 + +0.2 767,960 + +0.9 767,960 + -0.1 767,970 + -0.1 768,015 + +1.3 768,030 + +1.8 768,048 + -2.1 768,050 + +0.7 768,050 + -2.0 768,079 + -0.7
Or see this region's nucleotide sequence