Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_620 and PfGW456L13_621 are separated by 224 nucleotides PfGW456L13_621 and PfGW456L13_622 are separated by 830 nucleotides
PfGW456L13_620 - Radical SAM domain protein, at 710,646 to 711,704
_620
PfGW456L13_621 - hypothetical protein, at 711,929 to 712,231
_621
PfGW456L13_622 - Protein tyrosine/serine phosphatase, at 713,062 to 713,619
_622
Position (kb) 711
712
713 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 710.935 kb on + strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 710.936 kb on - strand, within PfGW456L13_620 at 711.204 kb on + strand, within PfGW456L13_620 at 711.204 kb on + strand, within PfGW456L13_620 at 711.204 kb on + strand, within PfGW456L13_620 at 711.205 kb on - strand, within PfGW456L13_620 at 711.205 kb on - strand, within PfGW456L13_620 at 711.255 kb on + strand, within PfGW456L13_620 at 711.255 kb on + strand, within PfGW456L13_620 at 711.255 kb on + strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.256 kb on - strand, within PfGW456L13_620 at 711.267 kb on - strand, within PfGW456L13_620 at 711.283 kb on + strand, within PfGW456L13_620 at 711.283 kb on + strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.284 kb on - strand, within PfGW456L13_620 at 711.346 kb on + strand, within PfGW456L13_620 at 711.442 kb on + strand, within PfGW456L13_620 at 711.442 kb on + strand, within PfGW456L13_620 at 711.443 kb on - strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.469 kb on + strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.470 kb on - strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.536 kb on + strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.537 kb on - strand, within PfGW456L13_620 at 711.597 kb on + strand, within PfGW456L13_620 at 711.597 kb on + strand, within PfGW456L13_620 at 711.598 kb on - strand, within PfGW456L13_620 at 711.698 kb on + strand at 711.698 kb on + strand at 711.699 kb on - strand at 711.725 kb on - strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.854 kb on + strand at 711.874 kb on - strand at 711.876 kb on - strand at 711.925 kb on - strand at 711.953 kb on - strand at 712.085 kb on + strand, within PfGW456L13_621 at 712.085 kb on + strand, within PfGW456L13_621 at 712.188 kb on + strand, within PfGW456L13_621 at 712.189 kb on - strand, within PfGW456L13_621 at 712.208 kb on + strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.209 kb on - strand at 712.216 kb on + strand at 712.261 kb on + strand at 712.262 kb on - strand at 712.262 kb on - strand at 712.345 kb on - strand at 712.345 kb on - strand at 712.345 kb on - strand at 712.345 kb on - strand at 712.348 kb on + strand at 712.349 kb on - strand at 712.349 kb on - strand at 712.382 kb on - strand at 712.386 kb on - strand at 712.394 kb on - strand at 712.396 kb on + strand at 712.397 kb on - strand at 712.397 kb on - strand at 712.475 kb on + strand at 712.477 kb on + strand at 712.547 kb on + strand at 712.612 kb on + strand at 712.630 kb on + strand at 712.635 kb on + strand at 712.635 kb on + strand at 712.636 kb on - strand at 712.641 kb on + strand at 712.719 kb on + strand at 712.719 kb on + strand at 712.719 kb on + strand at 712.721 kb on + strand at 712.722 kb on - strand at 712.742 kb on + strand at 712.743 kb on - strand at 712.808 kb on + strand at 712.809 kb on - strand at 712.809 kb on - strand at 712.809 kb on - strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.861 kb on + strand at 712.862 kb on - strand at 712.862 kb on - strand at 712.864 kb on - strand at 712.994 kb on + strand at 712.995 kb on - strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.003 kb on + strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.004 kb on - strand at 713.093 kb on + strand at 713.093 kb on + strand at 713.094 kb on - strand at 713.094 kb on - strand at 713.094 kb on - strand at 713.094 kb on - strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.104 kb on + strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand at 713.105 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 710,935 + PfGW456L13_620 0.27 -0.4 710,936 - PfGW456L13_620 0.27 +0.2 710,936 - PfGW456L13_620 0.27 -0.1 710,936 - PfGW456L13_620 0.27 -1.2 710,936 - PfGW456L13_620 0.27 -0.3 710,936 - PfGW456L13_620 0.27 -1.1 711,204 + PfGW456L13_620 0.53 -0.7 711,204 + PfGW456L13_620 0.53 -0.7 711,204 + PfGW456L13_620 0.53 +0.5 711,205 - PfGW456L13_620 0.53 -0.7 711,205 - PfGW456L13_620 0.53 +0.9 711,255 + PfGW456L13_620 0.58 -0.2 711,255 + PfGW456L13_620 0.58 +0.7 711,255 + PfGW456L13_620 0.58 -1.0 711,256 - PfGW456L13_620 0.58 +0.5 711,256 - PfGW456L13_620 0.58 -0.7 711,256 - PfGW456L13_620 0.58 -1.1 711,256 - PfGW456L13_620 0.58 -0.1 711,256 - PfGW456L13_620 0.58 -0.9 711,256 - PfGW456L13_620 0.58 +0.2 711,267 - PfGW456L13_620 0.59 -0.6 711,283 + PfGW456L13_620 0.60 +1.5 711,283 + PfGW456L13_620 0.60 -1.5 711,284 - PfGW456L13_620 0.60 +0.4 711,284 - PfGW456L13_620 0.60 -0.9 711,284 - PfGW456L13_620 0.60 -0.6 711,284 - PfGW456L13_620 0.60 -0.3 711,346 + PfGW456L13_620 0.66 -0.3 711,442 + PfGW456L13_620 0.75 +1.0 711,442 + PfGW456L13_620 0.75 -0.3 711,443 - PfGW456L13_620 0.75 -1.0 711,469 + PfGW456L13_620 0.78 -0.0 711,469 + PfGW456L13_620 0.78 +0.0 711,469 + PfGW456L13_620 0.78 +0.0 711,469 + PfGW456L13_620 0.78 +0.7 711,469 + PfGW456L13_620 0.78 -2.4 711,469 + PfGW456L13_620 0.78 +0.6 711,469 + PfGW456L13_620 0.78 -3.1 711,470 - PfGW456L13_620 0.78 -0.1 711,470 - PfGW456L13_620 0.78 -0.6 711,470 - PfGW456L13_620 0.78 -0.5 711,470 - PfGW456L13_620 0.78 -0.3 711,536 + PfGW456L13_620 0.84 -2.3 711,536 + PfGW456L13_620 0.84 -0.4 711,536 + PfGW456L13_620 0.84 -0.3 711,536 + PfGW456L13_620 0.84 +0.1 711,537 - PfGW456L13_620 0.84 -0.7 711,537 - PfGW456L13_620 0.84 +0.6 711,537 - PfGW456L13_620 0.84 -0.4 711,537 - PfGW456L13_620 0.84 -0.4 711,537 - PfGW456L13_620 0.84 -0.5 711,537 - PfGW456L13_620 0.84 +0.1 711,537 - PfGW456L13_620 0.84 -1.1 711,537 - PfGW456L13_620 0.84 +1.0 711,537 - PfGW456L13_620 0.84 +0.2 711,597 + PfGW456L13_620 0.90 -1.0 711,597 + PfGW456L13_620 0.90 -0.7 711,598 - PfGW456L13_620 0.90 +0.6 711,698 + +0.2 711,698 + -0.2 711,699 - +0.3 711,725 - -0.1 711,805 + -0.2 711,805 + -0.6 711,805 + -0.5 711,805 + +0.4 711,806 - -0.7 711,806 - +0.5 711,806 - +0.3 711,806 - +0.6 711,854 + -0.8 711,874 - +0.1 711,876 - -0.2 711,925 - -1.4 711,953 - -0.9 712,085 + PfGW456L13_621 0.51 -1.6 712,085 + PfGW456L13_621 0.51 -1.1 712,188 + PfGW456L13_621 0.85 -0.8 712,189 - PfGW456L13_621 0.86 -1.1 712,208 + -2.8 712,209 - +0.2 712,209 - -0.4 712,209 - -0.4 712,209 - -0.2 712,209 - +1.4 712,216 + -0.3 712,261 + -0.5 712,262 - +0.5 712,262 - +0.4 712,345 - +3.2 712,345 - -0.2 712,345 - -0.2 712,345 - -0.9 712,348 + +0.4 712,349 - +0.3 712,349 - +1.0 712,382 - +0.5 712,386 - +0.2 712,394 - -1.9 712,396 + +0.4 712,397 - -2.3 712,397 - -0.3 712,475 + +1.4 712,477 + +0.3 712,547 + +0.3 712,612 + +0.3 712,630 + +1.4 712,635 + -0.5 712,635 + -0.8 712,636 - +0.7 712,641 + -0.3 712,719 + -0.0 712,719 + -1.0 712,719 + -1.0 712,721 + +0.1 712,722 - +0.3 712,742 + -0.9 712,743 - +0.2 712,808 + -1.2 712,809 - +1.0 712,809 - +0.7 712,809 - -1.6 712,861 + +1.4 712,861 + -0.4 712,861 + -0.1 712,861 + +1.0 712,861 + -0.9 712,861 + -0.1 712,862 - -0.8 712,862 - +0.2 712,864 - +0.6 712,994 + +0.4 712,995 - -0.3 713,003 + -0.8 713,003 + +0.4 713,003 + +0.5 713,003 + +0.1 713,003 + +0.1 713,003 + -0.4 713,003 + +0.5 713,003 + -0.0 713,004 - +1.2 713,004 - -2.4 713,004 - -0.6 713,004 - -0.1 713,004 - +0.2 713,004 - +0.2 713,093 + -0.6 713,093 + -0.9 713,094 - -0.1 713,094 - +0.9 713,094 - +0.3 713,094 - +0.8 713,104 + -0.0 713,104 + +0.8 713,104 + -0.3 713,104 + +1.6 713,104 + +0.2 713,104 + -0.8 713,104 + +2.0 713,104 + +0.5 713,104 + +0.5 713,104 + +0.4 713,104 + +0.1 713,104 + +0.6 713,105 - +0.7 713,105 - -2.5 713,105 - -0.5 713,105 - +0.0 713,105 - +1.3 713,105 - -0.0 713,105 - +0.5 713,105 - +0.2 713,105 - +0.4 713,105 - -0.8 713,105 - -1.1
Or see this region's nucleotide sequence