Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_594

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_593 and PfGW456L13_594 are separated by 501 nucleotidesPfGW456L13_594 and PfGW456L13_595 are separated by 74 nucleotidesPfGW456L13_595 and PfGW456L13_596 are separated by 60 nucleotides PfGW456L13_593 - GTP-binding protein EngB, at 686,051 to 686,695 _593 PfGW456L13_594 - DNA polymerase I (EC 2.7.7.7), at 687,197 to 690,001 _594 PfGW456L13_595 - FIG00953549: hypothetical protein, at 690,076 to 690,363 _595 PfGW456L13_596 - Homoserine kinase (EC 2.7.1.39), at 690,424 to 691,374 _596 Position (kb) 687 688 689 690 691Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 686.693 kb on + strandat 686.693 kb on + strandat 686.694 kb on - strandat 686.694 kb on - strandat 686.757 kb on + strandat 686.757 kb on + strandat 686.765 kb on + strandat 686.765 kb on + strandat 686.765 kb on + strandat 686.766 kb on - strandat 686.792 kb on - strandat 686.852 kb on + strandat 686.852 kb on + strandat 686.852 kb on + strandat 686.852 kb on + strandat 686.853 kb on - strandat 686.853 kb on - strandat 686.853 kb on - strandat 686.853 kb on - strandat 686.886 kb on - strandat 686.886 kb on - strandat 686.909 kb on + strandat 686.909 kb on + strandat 686.909 kb on + strandat 686.910 kb on - strandat 686.910 kb on - strandat 686.922 kb on - strandat 686.923 kb on + strandat 686.923 kb on + strandat 686.923 kb on + strandat 686.923 kb on + strandat 686.923 kb on + strandat 686.924 kb on - strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.933 kb on + strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.934 kb on - strandat 686.966 kb on + strandat 686.967 kb on - strandat 686.967 kb on - strandat 686.992 kb on + strandat 686.992 kb on + strandat 686.992 kb on + strandat 686.993 kb on - strandat 686.993 kb on - strandat 686.993 kb on - strandat 686.993 kb on - strandat 686.993 kb on - strandat 687.013 kb on - strandat 687.013 kb on - strandat 687.013 kb on - strandat 687.024 kb on + strandat 687.032 kb on + strandat 687.033 kb on - strandat 687.079 kb on + strandat 687.187 kb on - strandat 687.218 kb on - strandat 687.218 kb on - strandat 687.279 kb on - strandat 687.279 kb on - strandat 688.413 kb on - strand, within PfGW456L13_594at 688.477 kb on + strand, within PfGW456L13_594at 688.478 kb on - strand, within PfGW456L13_594at 688.478 kb on - strand, within PfGW456L13_594at 688.478 kb on - strand, within PfGW456L13_594at 688.575 kb on - strand, within PfGW456L13_594at 688.594 kb on - strand, within PfGW456L13_594at 688.594 kb on - strand, within PfGW456L13_594at 688.594 kb on - strand, within PfGW456L13_594at 688.594 kb on - strand, within PfGW456L13_594at 688.647 kb on + strand, within PfGW456L13_594at 688.647 kb on + strand, within PfGW456L13_594at 688.648 kb on - strand, within PfGW456L13_594at 688.648 kb on - strand, within PfGW456L13_594at 690.072 kb on + strandat 690.073 kb on - strandat 690.073 kb on - strandat 690.086 kb on + strandat 690.086 kb on + strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.087 kb on - strandat 690.195 kb on + strand, within PfGW456L13_595at 690.196 kb on - strand, within PfGW456L13_595at 690.232 kb on + strand, within PfGW456L13_595at 690.269 kb on - strand, within PfGW456L13_595at 690.327 kb on + strand, within PfGW456L13_595at 690.361 kb on + strandat 690.361 kb on + strandat 690.361 kb on + strandat 690.362 kb on - strandat 690.419 kb on + strandat 690.419 kb on + strandat 690.419 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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686,693 + -0.2
686,693 + -0.3
686,694 - +1.7
686,694 - -0.7
686,757 + +0.4
686,757 + -1.1
686,765 + -0.9
686,765 + +0.9
686,765 + +0.1
686,766 - +0.7
686,792 - +0.1
686,852 + -0.3
686,852 + -0.4
686,852 + +1.8
686,852 + -0.2
686,853 - +1.2
686,853 - -0.1
686,853 - +1.2
686,853 - +0.0
686,886 - +0.5
686,886 - +0.7
686,909 + -0.3
686,909 + +0.3
686,909 + +0.0
686,910 - +0.4
686,910 - +0.4
686,922 - +0.3
686,923 + -0.3
686,923 + +0.2
686,923 + -0.1
686,923 + +1.1
686,923 + +0.1
686,924 - -0.1
686,933 + +0.9
686,933 + +0.1
686,933 + +1.5
686,933 + -0.8
686,933 + +0.5
686,933 + +2.8
686,933 + +0.3
686,933 + +0.2
686,933 + -0.7
686,933 + +0.5
686,933 + +1.3
686,934 - +1.7
686,934 - -1.0
686,934 - +0.5
686,934 - +0.6
686,934 - -0.2
686,934 - +0.9
686,934 - +1.4
686,934 - +0.2
686,934 - +0.2
686,934 - -0.0
686,934 - +1.3
686,934 - -0.7
686,934 - +0.9
686,966 + -0.2
686,967 - -0.2
686,967 - +0.8
686,992 + +0.2
686,992 + +1.1
686,992 + +0.1
686,993 - -0.0
686,993 - -0.7
686,993 - +0.3
686,993 - +0.5
686,993 - -0.4
687,013 - +0.9
687,013 - -0.2
687,013 - -0.2
687,024 + +0.5
687,032 + -0.1
687,033 - +0.8
687,079 + +1.8
687,187 - +0.9
687,218 - -0.7
687,218 - -0.3
687,279 - -0.2
687,279 - -1.7
688,413 - PfGW456L13_594 0.43 +1.2
688,477 + PfGW456L13_594 0.46 -1.8
688,478 - PfGW456L13_594 0.46 +0.8
688,478 - PfGW456L13_594 0.46 -0.0
688,478 - PfGW456L13_594 0.46 -0.7
688,575 - PfGW456L13_594 0.49 -0.9
688,594 - PfGW456L13_594 0.50 -1.8
688,594 - PfGW456L13_594 0.50 -1.4
688,594 - PfGW456L13_594 0.50 -1.0
688,594 - PfGW456L13_594 0.50 -1.2
688,647 + PfGW456L13_594 0.52 -3.2
688,647 + PfGW456L13_594 0.52 -1.0
688,648 - PfGW456L13_594 0.52 +0.8
688,648 - PfGW456L13_594 0.52 -0.4
690,072 + -0.4
690,073 - -0.6
690,073 - -1.4
690,086 + -0.0
690,086 + -1.8
690,087 - -3.0
690,087 - -0.9
690,087 - -1.5
690,195 + PfGW456L13_595 0.41 -1.4
690,196 - PfGW456L13_595 0.42 -2.7
690,232 + PfGW456L13_595 0.54 -1.2
690,269 - PfGW456L13_595 0.67 -1.2
690,327 + PfGW456L13_595 0.87 -0.3
690,361 + -0.0
690,361 + -1.8
690,361 + -0.5
690,362 - -0.6
690,419 + -3.0
690,419 + -2.2
690,419 + -1.9

Or see this region's nucleotide sequence