Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_574

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_572 and PfGW456L13_573 are separated by 179 nucleotidesPfGW456L13_573 and PfGW456L13_574 are separated by 4 nucleotidesPfGW456L13_574 and PfGW456L13_575 are separated by 41 nucleotidesPfGW456L13_575 and PfGW456L13_576 are separated by 131 nucleotides PfGW456L13_572 - Osmotically inducible protein C, at 668,058 to 668,489 _572 PfGW456L13_573 - FIG00955509: hypothetical protein, at 668,669 to 668,902 _573 PfGW456L13_574 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 668,907 to 669,326 _574 PfGW456L13_575 - lipoprotein, putative, at 669,368 to 669,790 _575 PfGW456L13_576 - PUTATIVE ZINC PROTEASE PROTEIN, at 669,922 to 670,947 _576 Position (kb) 668 669 670Strain fitness (log2 ratio) -2 -1 0 1 2at 667.907 kb on - strandat 667.907 kb on - strandat 667.907 kb on - strandat 667.908 kb on + strandat 667.988 kb on + strandat 667.988 kb on + strandat 667.988 kb on + strandat 668.157 kb on + strand, within PfGW456L13_572at 668.157 kb on + strand, within PfGW456L13_572at 668.157 kb on + strand, within PfGW456L13_572at 668.158 kb on - strand, within PfGW456L13_572at 668.158 kb on - strand, within PfGW456L13_572at 668.487 kb on + strandat 668.495 kb on - strandat 668.495 kb on - strandat 668.538 kb on + strandat 668.539 kb on - strandat 668.539 kb on - strandat 668.539 kb on - strandat 668.597 kb on + strandat 668.613 kb on + strandat 668.692 kb on + strandat 668.693 kb on - strand, within PfGW456L13_573at 668.693 kb on - strand, within PfGW456L13_573at 668.693 kb on - strand, within PfGW456L13_573at 668.787 kb on + strand, within PfGW456L13_573at 668.787 kb on + strand, within PfGW456L13_573at 668.795 kb on + strand, within PfGW456L13_573at 668.795 kb on + strand, within PfGW456L13_573at 668.796 kb on - strand, within PfGW456L13_573at 668.796 kb on - strand, within PfGW456L13_573at 668.882 kb on + strandat 668.882 kb on + strandat 668.882 kb on + strandat 668.882 kb on + strandat 668.882 kb on + strandat 668.883 kb on - strandat 668.883 kb on - strandat 668.883 kb on - strandat 668.962 kb on + strand, within PfGW456L13_574at 668.962 kb on + strand, within PfGW456L13_574at 668.963 kb on - strand, within PfGW456L13_574at 668.963 kb on - strand, within PfGW456L13_574at 668.963 kb on - strand, within PfGW456L13_574at 668.963 kb on - strand, within PfGW456L13_574at 668.963 kb on - strand, within PfGW456L13_574at 668.963 kb on - strand, within PfGW456L13_574at 669.010 kb on + strand, within PfGW456L13_574at 669.010 kb on + strand, within PfGW456L13_574at 669.010 kb on + strand, within PfGW456L13_574at 669.010 kb on + strand, within PfGW456L13_574at 669.010 kb on + strand, within PfGW456L13_574at 669.010 kb on + strand, within PfGW456L13_574at 669.011 kb on - strand, within PfGW456L13_574at 669.038 kb on - strand, within PfGW456L13_574at 669.038 kb on - strand, within PfGW456L13_574at 669.038 kb on - strand, within PfGW456L13_574at 669.038 kb on - strand, within PfGW456L13_574at 669.038 kb on - strand, within PfGW456L13_574at 669.038 kb on - strand, within PfGW456L13_574at 669.052 kb on + strand, within PfGW456L13_574at 669.306 kb on + strandat 669.346 kb on + strandat 669.359 kb on + strandat 669.360 kb on - strandat 669.426 kb on + strand, within PfGW456L13_575at 669.426 kb on + strand, within PfGW456L13_575at 669.426 kb on + strand, within PfGW456L13_575at 669.427 kb on - strand, within PfGW456L13_575at 669.427 kb on - strand, within PfGW456L13_575at 669.427 kb on - strand, within PfGW456L13_575at 669.467 kb on + strand, within PfGW456L13_575at 669.467 kb on + strand, within PfGW456L13_575at 669.467 kb on + strand, within PfGW456L13_575at 669.467 kb on + strand, within PfGW456L13_575at 669.467 kb on + strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.468 kb on - strand, within PfGW456L13_575at 669.621 kb on + strand, within PfGW456L13_575at 669.622 kb on - strand, within PfGW456L13_575at 669.629 kb on - strand, within PfGW456L13_575at 669.629 kb on - strand, within PfGW456L13_575at 669.729 kb on - strand, within PfGW456L13_575at 669.776 kb on + strandat 669.777 kb on - strandat 669.777 kb on - strandat 669.815 kb on - strandat 669.815 kb on - strandat 669.846 kb on + strandat 669.846 kb on + strandat 669.846 kb on + strandat 669.846 kb on + strandat 669.846 kb on + strandat 669.847 kb on - strandat 669.847 kb on - strandat 669.868 kb on - strandat 669.868 kb on - strandat 669.879 kb on - strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.952 kb on + strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.953 kb on - strandat 669.955 kb on + strandat 669.955 kb on + strandat 669.956 kb on - strandat 669.956 kb on - strandat 669.956 kb on - strandat 669.956 kb on - strandat 669.956 kb on - strandat 670.114 kb on - strand, within PfGW456L13_576at 670.123 kb on + strand, within PfGW456L13_576at 670.132 kb on + strand, within PfGW456L13_576at 670.133 kb on - strand, within PfGW456L13_576at 670.246 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.249 kb on + strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576at 670.250 kb on - strand, within PfGW456L13_576

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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667,907 - -0.8
667,907 - +1.1
667,907 - -0.9
667,908 + +0.1
667,988 + -0.3
667,988 + +0.2
667,988 + +0.4
668,157 + PfGW456L13_572 0.23 +0.2
668,157 + PfGW456L13_572 0.23 -1.0
668,157 + PfGW456L13_572 0.23 -2.5
668,158 - PfGW456L13_572 0.23 +0.8
668,158 - PfGW456L13_572 0.23 +1.1
668,487 + -0.7
668,495 - -1.9
668,495 - -1.0
668,538 + -0.2
668,539 - +1.2
668,539 - +1.4
668,539 - -0.3
668,597 + +1.2
668,613 + -0.6
668,692 + -0.3
668,693 - PfGW456L13_573 0.10 +0.6
668,693 - PfGW456L13_573 0.10 -1.6
668,693 - PfGW456L13_573 0.10 -0.4
668,787 + PfGW456L13_573 0.50 +1.8
668,787 + PfGW456L13_573 0.50 +0.1
668,795 + PfGW456L13_573 0.54 +1.1
668,795 + PfGW456L13_573 0.54 -1.0
668,796 - PfGW456L13_573 0.54 -0.4
668,796 - PfGW456L13_573 0.54 -0.7
668,882 + +0.7
668,882 + +1.3
668,882 + -0.0
668,882 + -0.9
668,882 + -0.5
668,883 - +0.0
668,883 - -0.1
668,883 - -1.2
668,962 + PfGW456L13_574 0.13 +0.3
668,962 + PfGW456L13_574 0.13 +0.9
668,963 - PfGW456L13_574 0.13 -2.3
668,963 - PfGW456L13_574 0.13 -0.0
668,963 - PfGW456L13_574 0.13 -1.1
668,963 - PfGW456L13_574 0.13 +0.1
668,963 - PfGW456L13_574 0.13 +0.9
668,963 - PfGW456L13_574 0.13 +0.3
669,010 + PfGW456L13_574 0.25 -1.0
669,010 + PfGW456L13_574 0.25 -0.1
669,010 + PfGW456L13_574 0.25 +1.4
669,010 + PfGW456L13_574 0.25 +0.1
669,010 + PfGW456L13_574 0.25 +1.0
669,010 + PfGW456L13_574 0.25 -0.8
669,011 - PfGW456L13_574 0.25 -0.5
669,038 - PfGW456L13_574 0.31 +1.1
669,038 - PfGW456L13_574 0.31 +0.4
669,038 - PfGW456L13_574 0.31 -1.5
669,038 - PfGW456L13_574 0.31 -0.2
669,038 - PfGW456L13_574 0.31 +0.8
669,038 - PfGW456L13_574 0.31 +0.8
669,052 + PfGW456L13_574 0.35 +0.4
669,306 + -0.2
669,346 + +1.9
669,359 + -0.1
669,360 - -0.7
669,426 + PfGW456L13_575 0.14 +1.0
669,426 + PfGW456L13_575 0.14 -1.8
669,426 + PfGW456L13_575 0.14 -0.7
669,427 - PfGW456L13_575 0.14 +1.2
669,427 - PfGW456L13_575 0.14 +0.3
669,427 - PfGW456L13_575 0.14 -1.1
669,467 + PfGW456L13_575 0.23 +0.7
669,467 + PfGW456L13_575 0.23 -0.5
669,467 + PfGW456L13_575 0.23 -0.7
669,467 + PfGW456L13_575 0.23 +0.3
669,467 + PfGW456L13_575 0.23 +0.8
669,468 - PfGW456L13_575 0.24 -0.1
669,468 - PfGW456L13_575 0.24 +0.4
669,468 - PfGW456L13_575 0.24 -0.1
669,468 - PfGW456L13_575 0.24 -0.4
669,468 - PfGW456L13_575 0.24 +0.3
669,468 - PfGW456L13_575 0.24 -0.8
669,468 - PfGW456L13_575 0.24 -1.1
669,468 - PfGW456L13_575 0.24 +0.2
669,468 - PfGW456L13_575 0.24 +0.1
669,468 - PfGW456L13_575 0.24 +0.2
669,621 + PfGW456L13_575 0.60 +0.6
669,622 - PfGW456L13_575 0.60 +0.4
669,629 - PfGW456L13_575 0.62 -0.9
669,629 - PfGW456L13_575 0.62 -0.1
669,729 - PfGW456L13_575 0.85 +0.5
669,776 + +0.8
669,777 - -0.7
669,777 - -0.9
669,815 - +1.9
669,815 - -1.1
669,846 + +0.2
669,846 + +1.8
669,846 + +0.8
669,846 + -0.9
669,846 + -0.7
669,847 - +0.2
669,847 - -0.8
669,868 - +0.4
669,868 - +0.4
669,879 - +0.5
669,952 + -1.1
669,952 + -0.5
669,952 + -1.7
669,952 + +0.2
669,952 + +1.2
669,953 - -1.0
669,953 - -0.6
669,953 - -0.1
669,953 - -1.5
669,953 - +0.9
669,953 - +0.8
669,953 - -1.3
669,953 - -1.1
669,953 - -0.9
669,953 - +1.0
669,953 - -1.2
669,955 + +0.3
669,955 + -1.2
669,956 - -0.6
669,956 - -1.1
669,956 - -1.1
669,956 - -1.3
669,956 - +0.2
670,114 - PfGW456L13_576 0.19 +0.8
670,123 + PfGW456L13_576 0.20 +0.4
670,132 + PfGW456L13_576 0.20 +0.6
670,133 - PfGW456L13_576 0.21 -0.7
670,246 + PfGW456L13_576 0.32 -1.2
670,249 + PfGW456L13_576 0.32 -0.0
670,249 + PfGW456L13_576 0.32 -0.5
670,249 + PfGW456L13_576 0.32 -0.2
670,249 + PfGW456L13_576 0.32 +1.1
670,249 + PfGW456L13_576 0.32 +0.5
670,249 + PfGW456L13_576 0.32 -0.2
670,250 - PfGW456L13_576 0.32 +0.3
670,250 - PfGW456L13_576 0.32 -0.6
670,250 - PfGW456L13_576 0.32 -1.4
670,250 - PfGW456L13_576 0.32 +0.2
670,250 - PfGW456L13_576 0.32 -2.1

Or see this region's nucleotide sequence