Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_565

Experiment: Vancomycin 0.5 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPfGW456L13_564 and PfGW456L13_565 are separated by 154 nucleotidesPfGW456L13_565 and PfGW456L13_566 overlap by 1 nucleotides PfGW456L13_564 - FIG00953482: hypothetical protein, at 660,548 to 662,509 _564 PfGW456L13_565 - Tryptophan synthase alpha chain (EC 4.2.1.20), at 662,664 to 663,476 _565 PfGW456L13_566 - Tryptophan synthase beta chain (EC 4.2.1.20), at 663,476 to 664,696 _566 Position (kb) 662 663 664Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 661.745 kb on + strand, within PfGW456L13_564at 661.745 kb on + strand, within PfGW456L13_564at 661.757 kb on + strand, within PfGW456L13_564at 661.757 kb on + strand, within PfGW456L13_564at 661.757 kb on + strand, within PfGW456L13_564at 661.757 kb on + strand, within PfGW456L13_564at 661.757 kb on + strand, within PfGW456L13_564at 661.758 kb on - strand, within PfGW456L13_564at 661.758 kb on - strand, within PfGW456L13_564at 661.758 kb on - strand, within PfGW456L13_564at 661.758 kb on - strand, within PfGW456L13_564at 661.758 kb on - strand, within PfGW456L13_564at 661.800 kb on + strand, within PfGW456L13_564at 661.801 kb on - strand, within PfGW456L13_564at 661.801 kb on - strand, within PfGW456L13_564at 662.106 kb on + strand, within PfGW456L13_564at 662.107 kb on - strand, within PfGW456L13_564at 662.168 kb on + strand, within PfGW456L13_564at 662.168 kb on + strand, within PfGW456L13_564at 662.187 kb on + strand, within PfGW456L13_564at 662.188 kb on - strand, within PfGW456L13_564at 662.188 kb on - strand, within PfGW456L13_564at 662.289 kb on - strand, within PfGW456L13_564at 662.496 kb on + strandat 662.510 kb on + strandat 662.551 kb on - strandat 662.569 kb on + strandat 662.569 kb on + strandat 662.570 kb on - strandat 662.570 kb on - strandat 662.570 kb on - strandat 662.647 kb on + strandat 662.648 kb on - strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.659 kb on + strandat 662.660 kb on - strandat 662.660 kb on - strandat 662.947 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 662.951 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.152 kb on - strand, within PfGW456L13_565at 663.173 kb on - strand, within PfGW456L13_565at 663.173 kb on - strand, within PfGW456L13_565at 663.389 kb on - strand, within PfGW456L13_565at 663.389 kb on - strand, within PfGW456L13_565at 663.389 kb on - strand, within PfGW456L13_565at 663.600 kb on - strand, within PfGW456L13_566at 663.600 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 663.703 kb on - strand, within PfGW456L13_566at 664.116 kb on + strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.117 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.276 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566at 664.453 kb on - strand, within PfGW456L13_566

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
remove
661,745 + PfGW456L13_564 0.61 -0.2
661,745 + PfGW456L13_564 0.61 +1.6
661,757 + PfGW456L13_564 0.62 +1.5
661,757 + PfGW456L13_564 0.62 -0.6
661,757 + PfGW456L13_564 0.62 +0.1
661,757 + PfGW456L13_564 0.62 +0.5
661,757 + PfGW456L13_564 0.62 +1.9
661,758 - PfGW456L13_564 0.62 +1.0
661,758 - PfGW456L13_564 0.62 +0.4
661,758 - PfGW456L13_564 0.62 -0.7
661,758 - PfGW456L13_564 0.62 +1.5
661,758 - PfGW456L13_564 0.62 -1.3
661,800 + PfGW456L13_564 0.64 +1.4
661,801 - PfGW456L13_564 0.64 +0.4
661,801 - PfGW456L13_564 0.64 +0.2
662,106 + PfGW456L13_564 0.79 -0.2
662,107 - PfGW456L13_564 0.79 +0.2
662,168 + PfGW456L13_564 0.83 -0.8
662,168 + PfGW456L13_564 0.83 +0.2
662,187 + PfGW456L13_564 0.84 +0.2
662,188 - PfGW456L13_564 0.84 -1.1
662,188 - PfGW456L13_564 0.84 +3.8
662,289 - PfGW456L13_564 0.89 +0.3
662,496 + -0.1
662,510 + +0.4
662,551 - -1.3
662,569 + +0.2
662,569 + -0.9
662,570 - -0.7
662,570 - +0.3
662,570 - -1.1
662,647 + +0.7
662,648 - +0.7
662,659 + -1.1
662,659 + -0.4
662,659 + -1.0
662,659 + -0.6
662,660 - +0.4
662,660 - +0.1
662,947 - PfGW456L13_565 0.35 +0.7
662,951 - PfGW456L13_565 0.35 -1.8
662,951 - PfGW456L13_565 0.35 -4.1
662,951 - PfGW456L13_565 0.35 -0.4
662,951 - PfGW456L13_565 0.35 -0.0
663,152 - PfGW456L13_565 0.60 -1.6
663,152 - PfGW456L13_565 0.60 -0.8
663,152 - PfGW456L13_565 0.60 -2.1
663,152 - PfGW456L13_565 0.60 -2.2
663,152 - PfGW456L13_565 0.60 +0.0
663,152 - PfGW456L13_565 0.60 -1.9
663,173 - PfGW456L13_565 0.63 -1.8
663,173 - PfGW456L13_565 0.63 -1.7
663,389 - PfGW456L13_565 0.89 -1.4
663,389 - PfGW456L13_565 0.89 -1.1
663,389 - PfGW456L13_565 0.89 -1.5
663,600 - PfGW456L13_566 0.10 -0.4
663,600 - PfGW456L13_566 0.10 -0.9
663,703 - PfGW456L13_566 0.19 +0.0
663,703 - PfGW456L13_566 0.19 -2.2
663,703 - PfGW456L13_566 0.19 +0.6
663,703 - PfGW456L13_566 0.19 -2.0
664,116 + PfGW456L13_566 0.52 +0.2
664,117 - PfGW456L13_566 0.52 -1.4
664,117 - PfGW456L13_566 0.52 -0.8
664,117 - PfGW456L13_566 0.52 -2.0
664,117 - PfGW456L13_566 0.52 +0.2
664,117 - PfGW456L13_566 0.52 -1.4
664,276 - PfGW456L13_566 0.66 -2.1
664,276 - PfGW456L13_566 0.66 +0.0
664,276 - PfGW456L13_566 0.66 -1.6
664,276 - PfGW456L13_566 0.66 +1.2
664,276 - PfGW456L13_566 0.66 -1.5
664,276 - PfGW456L13_566 0.66 -1.1
664,276 - PfGW456L13_566 0.66 -2.2
664,276 - PfGW456L13_566 0.66 -1.7
664,276 - PfGW456L13_566 0.66 -0.0
664,276 - PfGW456L13_566 0.66 -1.9
664,453 - PfGW456L13_566 0.80 -2.1
664,453 - PfGW456L13_566 0.80 -0.7
664,453 - PfGW456L13_566 0.80 +0.4
664,453 - PfGW456L13_566 0.80 -1.4

Or see this region's nucleotide sequence