Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_5200

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_5199 and PfGW456L13_5200 are separated by 121 nucleotidesPfGW456L13_5200 and PfGW456L13_5201 are separated by 13 nucleotidesPfGW456L13_5201 and PfGW456L13_5202 are separated by 237 nucleotides PfGW456L13_5199 - Small Subunit Ribosomal RNA; ssuRNA; SSU rRNA, at 2,547,586 to 2,549,114 _5199 PfGW456L13_5200 - tRNA-Ile-GAT, at 2,549,236 to 2,549,309 _5200 PfGW456L13_5201 - tRNA-Ala-TGC, at 2,549,323 to 2,549,395 _5201 PfGW456L13_5202 - Large Subunit Ribosomal RNA; lsuRNA; LSU rRNA, at 2,549,633 to 2,552,525 _5202 Position (kb) 2549 2550Strain fitness (log2 ratio) -1 0 1 2at 2549.135 kb on + strandat 2549.176 kb on + strandat 2549.176 kb on + strandat 2549.176 kb on + strandat 2549.188 kb on + strandat 2549.188 kb on + strandat 2549.203 kb on + strandat 2549.203 kb on + strandat 2549.214 kb on + strandat 2549.214 kb on + strandat 2549.399 kb on + strandat 2549.399 kb on + strandat 2549.399 kb on + strandat 2549.401 kb on + strandat 2549.401 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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2,549,135 + -1.2
2,549,176 + -0.4
2,549,176 + -0.0
2,549,176 + -0.2
2,549,188 + -0.6
2,549,188 + -0.9
2,549,203 + +0.3
2,549,203 + +1.7
2,549,214 + -0.1
2,549,214 + -0.9
2,549,399 + +0.1
2,549,399 + +0.9
2,549,399 + +0.2
2,549,401 + +1.8
2,549,401 + -1.2

Or see this region's nucleotide sequence