Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_366 and PfGW456L13_367 overlap by 4 nucleotides PfGW456L13_367 and PfGW456L13_5160 are separated by 103 nucleotides PfGW456L13_5160 and PfGW456L13_368 are separated by 321 nucleotides
PfGW456L13_366 - A/G-specific adenine glycosylase (EC 3.2.2.-), at 426,544 to 427,611
_366
PfGW456L13_367 - FIG001341: Probable Fe(2+)-trafficking protein YggX, at 427,608 to 427,880
_367
PfGW456L13_5160 - tRNA-Phe-GAA, at 427,984 to 428,056
_5160
PfGW456L13_368 - hypothetical protein, at 428,378 to 429,457
_368
Position (kb) 427
428
429 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 427.082 kb on - strand, within PfGW456L13_366 at 427.082 kb on - strand, within PfGW456L13_366 at 427.286 kb on - strand, within PfGW456L13_366 at 427.514 kb on - strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.515 kb on + strand at 427.800 kb on + strand, within PfGW456L13_367 at 427.800 kb on + strand, within PfGW456L13_367 at 427.800 kb on + strand, within PfGW456L13_367 at 427.801 kb on - strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.824 kb on + strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.825 kb on - strand, within PfGW456L13_367 at 427.860 kb on + strand at 427.861 kb on - strand at 427.861 kb on - strand at 427.861 kb on - strand at 428.200 kb on + strand at 428.201 kb on - strand at 428.272 kb on + strand at 428.297 kb on + strand at 428.297 kb on + strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.298 kb on - strand at 428.357 kb on + strand at 428.358 kb on - strand at 428.358 kb on - strand at 428.358 kb on - strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.372 kb on + strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.373 kb on - strand at 428.562 kb on + strand, within PfGW456L13_368 at 428.562 kb on + strand, within PfGW456L13_368 at 428.562 kb on + strand, within PfGW456L13_368 at 428.563 kb on - strand at 428.563 kb on - strand, within PfGW456L13_368 at 428.563 kb on - strand, within PfGW456L13_368 at 428.563 kb on - strand, within PfGW456L13_368 at 428.606 kb on + strand, within PfGW456L13_368 at 428.606 kb on + strand, within PfGW456L13_368 at 428.607 kb on - strand, within PfGW456L13_368 at 428.607 kb on - strand, within PfGW456L13_368 at 428.781 kb on - strand, within PfGW456L13_368 at 428.781 kb on - strand, within PfGW456L13_368 at 428.911 kb on + strand, within PfGW456L13_368 at 428.912 kb on - strand, within PfGW456L13_368 at 428.912 kb on - strand, within PfGW456L13_368 at 428.912 kb on - strand, within PfGW456L13_368 at 428.924 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.979 kb on + strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.980 kb on - strand, within PfGW456L13_368 at 428.982 kb on + strand, within PfGW456L13_368 at 428.982 kb on + strand, within PfGW456L13_368 at 429.014 kb on - strand, within PfGW456L13_368 at 429.030 kb on + strand, within PfGW456L13_368 at 429.030 kb on + strand, within PfGW456L13_368 at 429.040 kb on - strand, within PfGW456L13_368
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 427,082 - PfGW456L13_366 0.50 +1.3 427,082 - PfGW456L13_366 0.50 +0.3 427,286 - PfGW456L13_366 0.69 +0.1 427,514 - +0.6 427,515 + +1.0 427,515 + +0.1 427,515 + +0.7 427,515 + -0.1 427,800 + PfGW456L13_367 0.70 +0.1 427,800 + PfGW456L13_367 0.70 -2.4 427,800 + PfGW456L13_367 0.70 +0.3 427,801 - PfGW456L13_367 0.71 -2.0 427,824 + PfGW456L13_367 0.79 -3.4 427,824 + PfGW456L13_367 0.79 -2.6 427,824 + PfGW456L13_367 0.79 -1.9 427,825 - PfGW456L13_367 0.79 -2.2 427,825 - PfGW456L13_367 0.79 -0.9 427,825 - PfGW456L13_367 0.79 +0.5 427,825 - PfGW456L13_367 0.79 -1.0 427,860 + +1.2 427,861 - -1.0 427,861 - -0.1 427,861 - +1.4 428,200 + +1.0 428,201 - -2.9 428,272 + +0.8 428,297 + +1.6 428,297 + -0.2 428,298 - +0.4 428,298 - -0.5 428,298 - +0.5 428,298 - -0.4 428,298 - +0.8 428,298 - -0.3 428,298 - +0.7 428,298 - +1.9 428,357 + -0.4 428,358 - -1.0 428,358 - +0.2 428,358 - +1.1 428,372 + +0.1 428,372 + -2.7 428,372 + +0.1 428,372 + +0.3 428,372 + +0.0 428,372 + -0.8 428,372 + -0.0 428,372 + +1.7 428,372 + +0.8 428,372 + -1.1 428,372 + -1.3 428,372 + +0.7 428,372 + -0.9 428,373 - -1.0 428,373 - +1.1 428,373 - +1.1 428,373 - +0.5 428,373 - -0.1 428,373 - -0.8 428,373 - +0.8 428,373 - +0.9 428,373 - -0.3 428,373 - -0.9 428,373 - +0.4 428,373 - -0.1 428,373 - -0.9 428,373 - +0.5 428,373 - -0.8 428,373 - +0.6 428,373 - -0.4 428,373 - +0.8 428,562 + PfGW456L13_368 0.17 -1.5 428,562 + PfGW456L13_368 0.17 +0.1 428,562 + PfGW456L13_368 0.17 -1.0 428,563 - +0.5 428,563 - PfGW456L13_368 0.17 +0.1 428,563 - PfGW456L13_368 0.17 +0.1 428,563 - PfGW456L13_368 0.17 +0.2 428,606 + PfGW456L13_368 0.21 +1.0 428,606 + PfGW456L13_368 0.21 -0.1 428,607 - PfGW456L13_368 0.21 -0.5 428,607 - PfGW456L13_368 0.21 +0.1 428,781 - PfGW456L13_368 0.37 +0.0 428,781 - PfGW456L13_368 0.37 -0.3 428,911 + PfGW456L13_368 0.49 -0.3 428,912 - PfGW456L13_368 0.49 +0.3 428,912 - PfGW456L13_368 0.49 -0.7 428,912 - PfGW456L13_368 0.49 +1.6 428,924 + PfGW456L13_368 0.51 +1.0 428,979 + PfGW456L13_368 0.56 -2.2 428,979 + PfGW456L13_368 0.56 -0.0 428,979 + PfGW456L13_368 0.56 +1.5 428,979 + PfGW456L13_368 0.56 +0.6 428,979 + PfGW456L13_368 0.56 -0.0 428,980 - PfGW456L13_368 0.56 -0.6 428,980 - PfGW456L13_368 0.56 -0.0 428,980 - PfGW456L13_368 0.56 +1.1 428,980 - PfGW456L13_368 0.56 +1.1 428,980 - PfGW456L13_368 0.56 +1.1 428,980 - PfGW456L13_368 0.56 +0.4 428,980 - PfGW456L13_368 0.56 +1.7 428,980 - PfGW456L13_368 0.56 -1.2 428,982 + PfGW456L13_368 0.56 +0.6 428,982 + PfGW456L13_368 0.56 +0.0 429,014 - PfGW456L13_368 0.59 +0.4 429,030 + PfGW456L13_368 0.60 +1.2 429,030 + PfGW456L13_368 0.60 -1.1 429,040 - PfGW456L13_368 0.61 +0.7
Or see this region's nucleotide sequence