Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_5148 and PfGW456L13_5149 are separated by 335 nucleotides PfGW456L13_5149 and PfGW456L13_5150 overlap by 4 nucleotides PfGW456L13_5150 and PfGW456L13_5151 overlap by 4 nucleotides
PfGW456L13_5148 - hypothetical protein, at 5,744,958 to 5,745,362
_5148
PfGW456L13_5149 - Transcriptional regulator, LysR family, at 5,745,698 to 5,745,838
_5149
PfGW456L13_5150 - Exodeoxyribonuclease V alpha chain (EC 3.1.11.5), at 5,745,835 to 5,747,928
_5150
PfGW456L13_5151 - Exodeoxyribonuclease V beta chain (EC 3.1.11.5), at 5,747,925 to 5,751,614
_5151
Position (kb) 5745
5746
5747
5748 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5744.911 kb on + strand at 5744.912 kb on - strand at 5744.912 kb on - strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.914 kb on + strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5744.915 kb on - strand at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.017 kb on + strand, within PfGW456L13_5148 at 5745.031 kb on - strand, within PfGW456L13_5148 at 5745.060 kb on + strand, within PfGW456L13_5148 at 5745.060 kb on + strand, within PfGW456L13_5148 at 5745.061 kb on - strand, within PfGW456L13_5148 at 5745.061 kb on - strand, within PfGW456L13_5148 at 5745.075 kb on + strand, within PfGW456L13_5148 at 5745.075 kb on + strand, within PfGW456L13_5148 at 5745.076 kb on - strand, within PfGW456L13_5148 at 5745.076 kb on - strand, within PfGW456L13_5148 at 5745.076 kb on - strand, within PfGW456L13_5148 at 5745.163 kb on + strand, within PfGW456L13_5148 at 5745.163 kb on + strand, within PfGW456L13_5148 at 5745.163 kb on + strand, within PfGW456L13_5148 at 5745.163 kb on + strand, within PfGW456L13_5148 at 5745.163 kb on + strand, within PfGW456L13_5148 at 5745.163 kb on + strand, within PfGW456L13_5148 at 5745.164 kb on - strand, within PfGW456L13_5148 at 5745.164 kb on - strand, within PfGW456L13_5148 at 5745.201 kb on + strand, within PfGW456L13_5148 at 5745.202 kb on - strand, within PfGW456L13_5148 at 5745.241 kb on + strand, within PfGW456L13_5148 at 5745.241 kb on + strand, within PfGW456L13_5148 at 5745.242 kb on - strand, within PfGW456L13_5148 at 5745.269 kb on + strand, within PfGW456L13_5148 at 5745.269 kb on + strand, within PfGW456L13_5148 at 5745.269 kb on + strand, within PfGW456L13_5148 at 5745.270 kb on - strand, within PfGW456L13_5148 at 5745.270 kb on - strand, within PfGW456L13_5148 at 5745.270 kb on - strand, within PfGW456L13_5148 at 5745.347 kb on + strand at 5745.347 kb on + strand at 5745.348 kb on - strand at 5745.375 kb on + strand at 5745.375 kb on + strand at 5745.375 kb on + strand at 5745.375 kb on + strand at 5745.375 kb on + strand at 5745.376 kb on - strand at 5745.376 kb on - strand at 5745.376 kb on - strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.400 kb on + strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.401 kb on - strand at 5745.496 kb on - strand at 5745.496 kb on - strand at 5745.496 kb on - strand at 5745.511 kb on + strand at 5745.511 kb on + strand at 5745.512 kb on - strand at 5745.533 kb on + strand at 5745.533 kb on + strand at 5745.533 kb on + strand at 5745.539 kb on + strand at 5745.540 kb on - strand at 5745.564 kb on - strand at 5745.589 kb on + strand at 5745.589 kb on + strand at 5745.589 kb on + strand at 5745.589 kb on + strand at 5745.590 kb on - strand at 5745.590 kb on - strand at 5745.593 kb on + strand at 5745.593 kb on + strand at 5745.594 kb on - strand at 5745.594 kb on - strand at 5745.608 kb on + strand at 5745.609 kb on - strand at 5745.609 kb on - strand at 5745.633 kb on + strand at 5745.633 kb on + strand at 5745.633 kb on + strand at 5745.634 kb on - strand at 5745.664 kb on + strand at 5745.673 kb on + strand at 5745.673 kb on + strand at 5745.673 kb on + strand at 5745.674 kb on - strand at 5745.674 kb on - strand at 5745.713 kb on + strand, within PfGW456L13_5149 at 5745.714 kb on - strand, within PfGW456L13_5149 at 5745.714 kb on - strand, within PfGW456L13_5149 at 5745.714 kb on - strand, within PfGW456L13_5149 at 5745.714 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5745.765 kb on - strand, within PfGW456L13_5149 at 5746.045 kb on - strand, within PfGW456L13_5150 at 5746.045 kb on - strand, within PfGW456L13_5150 at 5746.479 kb on - strand, within PfGW456L13_5150 at 5746.568 kb on + strand, within PfGW456L13_5150 at 5746.569 kb on - strand, within PfGW456L13_5150 at 5746.569 kb on - strand, within PfGW456L13_5150 at 5746.569 kb on - strand, within PfGW456L13_5150 at 5747.928 kb on + strand at 5747.928 kb on + strand at 5747.929 kb on - strand at 5747.929 kb on - strand at 5747.929 kb on - strand at 5747.934 kb on + strand at 5747.934 kb on + strand at 5747.934 kb on + strand at 5747.935 kb on - strand at 5747.935 kb on - strand at 5748.905 kb on - strand, within PfGW456L13_5151 at 5748.905 kb on - strand, within PfGW456L13_5151
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 5,744,911 + -0.6 5,744,912 - +0.4 5,744,912 - -0.1 5,744,914 + +1.6 5,744,914 + -0.4 5,744,914 + +0.8 5,744,914 + -0.6 5,744,914 + +0.2 5,744,914 + -0.2 5,744,914 + -0.9 5,744,914 + -0.1 5,744,915 - -0.8 5,744,915 - -1.6 5,744,915 - -0.2 5,744,915 - +0.4 5,744,915 - -0.1 5,744,915 - +0.9 5,744,915 - -0.0 5,744,915 - -0.8 5,744,915 - -1.4 5,745,017 + PfGW456L13_5148 0.15 -0.3 5,745,017 + PfGW456L13_5148 0.15 +0.3 5,745,017 + PfGW456L13_5148 0.15 +0.2 5,745,017 + PfGW456L13_5148 0.15 -0.1 5,745,017 + PfGW456L13_5148 0.15 +3.2 5,745,017 + PfGW456L13_5148 0.15 +0.5 5,745,017 + PfGW456L13_5148 0.15 +0.7 5,745,031 - PfGW456L13_5148 0.18 -1.1 5,745,060 + PfGW456L13_5148 0.25 +0.2 5,745,060 + PfGW456L13_5148 0.25 -0.4 5,745,061 - PfGW456L13_5148 0.25 +0.5 5,745,061 - PfGW456L13_5148 0.25 +0.7 5,745,075 + PfGW456L13_5148 0.29 +0.4 5,745,075 + PfGW456L13_5148 0.29 +0.2 5,745,076 - PfGW456L13_5148 0.29 +1.7 5,745,076 - PfGW456L13_5148 0.29 +0.4 5,745,076 - PfGW456L13_5148 0.29 +1.8 5,745,163 + PfGW456L13_5148 0.51 -0.5 5,745,163 + PfGW456L13_5148 0.51 +1.3 5,745,163 + PfGW456L13_5148 0.51 -0.3 5,745,163 + PfGW456L13_5148 0.51 +0.3 5,745,163 + PfGW456L13_5148 0.51 +0.4 5,745,163 + PfGW456L13_5148 0.51 -0.2 5,745,164 - PfGW456L13_5148 0.51 +0.1 5,745,164 - PfGW456L13_5148 0.51 +0.7 5,745,201 + PfGW456L13_5148 0.60 +1.4 5,745,202 - PfGW456L13_5148 0.60 -0.5 5,745,241 + PfGW456L13_5148 0.70 +1.0 5,745,241 + PfGW456L13_5148 0.70 -2.0 5,745,242 - PfGW456L13_5148 0.70 +1.3 5,745,269 + PfGW456L13_5148 0.77 +0.7 5,745,269 + PfGW456L13_5148 0.77 +1.1 5,745,269 + PfGW456L13_5148 0.77 -0.2 5,745,270 - PfGW456L13_5148 0.77 +0.2 5,745,270 - PfGW456L13_5148 0.77 -0.2 5,745,270 - PfGW456L13_5148 0.77 +1.0 5,745,347 + +0.3 5,745,347 + -0.2 5,745,348 - +0.5 5,745,375 + +0.1 5,745,375 + -1.5 5,745,375 + -1.2 5,745,375 + +0.4 5,745,375 + -1.1 5,745,376 - +0.6 5,745,376 - +0.2 5,745,376 - +1.7 5,745,400 + +0.2 5,745,400 + +0.3 5,745,400 + -0.5 5,745,400 + +2.8 5,745,400 + -0.0 5,745,400 + +0.2 5,745,400 + +0.5 5,745,400 + -0.4 5,745,400 + -0.4 5,745,400 + -1.3 5,745,400 + +0.1 5,745,400 + +0.8 5,745,400 + -0.2 5,745,400 + +1.2 5,745,400 + +0.2 5,745,400 + +0.5 5,745,400 + -0.2 5,745,400 + +0.3 5,745,400 + +1.2 5,745,400 + -0.6 5,745,400 + -0.3 5,745,400 + +2.3 5,745,400 + +1.6 5,745,400 + +0.6 5,745,401 - +0.8 5,745,401 - +0.7 5,745,401 - -1.0 5,745,401 - +0.4 5,745,401 - +1.0 5,745,401 - +0.1 5,745,401 - +0.1 5,745,401 - +0.0 5,745,401 - +0.5 5,745,401 - -1.2 5,745,401 - +1.5 5,745,401 - +1.0 5,745,401 - +0.8 5,745,401 - -0.4 5,745,401 - -0.6 5,745,401 - -1.9 5,745,401 - -2.1 5,745,401 - -0.9 5,745,496 - -0.7 5,745,496 - -0.3 5,745,496 - -1.6 5,745,511 + +1.3 5,745,511 + +0.3 5,745,512 - +0.7 5,745,533 + +0.6 5,745,533 + +0.3 5,745,533 + +0.2 5,745,539 + +0.8 5,745,540 - -0.5 5,745,564 - +0.4 5,745,589 + -2.9 5,745,589 + -0.1 5,745,589 + -1.3 5,745,589 + +0.5 5,745,590 - +0.7 5,745,590 - +0.1 5,745,593 + +0.6 5,745,593 + +0.5 5,745,594 - -0.7 5,745,594 - -0.6 5,745,608 + +0.4 5,745,609 - -2.2 5,745,609 - +0.6 5,745,633 + -0.3 5,745,633 + +0.9 5,745,633 + -0.1 5,745,634 - -1.6 5,745,664 + -0.3 5,745,673 + -2.3 5,745,673 + +0.0 5,745,673 + -0.5 5,745,674 - -2.7 5,745,674 - +0.8 5,745,713 + PfGW456L13_5149 0.11 +0.6 5,745,714 - PfGW456L13_5149 0.11 -2.0 5,745,714 - PfGW456L13_5149 0.11 +0.7 5,745,714 - PfGW456L13_5149 0.11 +0.4 5,745,714 - PfGW456L13_5149 0.11 +0.9 5,745,765 - PfGW456L13_5149 0.48 +1.4 5,745,765 - PfGW456L13_5149 0.48 +1.0 5,745,765 - PfGW456L13_5149 0.48 -0.8 5,745,765 - PfGW456L13_5149 0.48 -0.2 5,745,765 - PfGW456L13_5149 0.48 -0.1 5,745,765 - PfGW456L13_5149 0.48 +0.5 5,745,765 - PfGW456L13_5149 0.48 -1.1 5,746,045 - PfGW456L13_5150 0.10 -0.6 5,746,045 - PfGW456L13_5150 0.10 -1.8 5,746,479 - PfGW456L13_5150 0.31 -3.1 5,746,568 + PfGW456L13_5150 0.35 -0.6 5,746,569 - PfGW456L13_5150 0.35 -2.3 5,746,569 - PfGW456L13_5150 0.35 -1.8 5,746,569 - PfGW456L13_5150 0.35 -0.6 5,747,928 + -1.3 5,747,928 + -0.6 5,747,929 - -0.6 5,747,929 - +0.3 5,747,929 - -0.1 5,747,934 + +2.6 5,747,934 + +0.5 5,747,934 + +0.8 5,747,935 - -0.5 5,747,935 - +0.4 5,748,905 - PfGW456L13_5151 0.27 -1.2 5,748,905 - PfGW456L13_5151 0.27 -0.7
Or see this region's nucleotide sequence