Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4826 and PfGW456L13_4827 are separated by 147 nucleotides PfGW456L13_4827 and PfGW456L13_4828 are separated by 121 nucleotides PfGW456L13_4828 and PfGW456L13_4829 are separated by 296 nucleotides
PfGW456L13_4826 - Hypothetical nudix hydrolase YeaB, at 5,389,305 to 5,389,904
_4826
PfGW456L13_4827 - MutT/nudix family protein, at 5,390,052 to 5,390,603
_4827
PfGW456L13_4828 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,390,725 to 5,391,228
_4828
PfGW456L13_4829 - Predicted transcriptional regulator of N-Acetylglucosamine utilization, GntR family, at 5,391,525 to 5,392,256
_4829
Position (kb) 5390
5391
5392 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5389.890 kb on + strand at 5389.890 kb on + strand at 5389.890 kb on + strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5389.891 kb on - strand at 5390.026 kb on + strand at 5390.027 kb on - strand at 5390.027 kb on - strand at 5390.027 kb on - strand at 5390.152 kb on - strand, within PfGW456L13_4827 at 5390.203 kb on + strand, within PfGW456L13_4827 at 5390.203 kb on + strand, within PfGW456L13_4827 at 5390.203 kb on + strand, within PfGW456L13_4827 at 5390.203 kb on + strand, within PfGW456L13_4827 at 5390.203 kb on + strand, within PfGW456L13_4827 at 5390.204 kb on - strand, within PfGW456L13_4827 at 5390.204 kb on - strand, within PfGW456L13_4827 at 5390.204 kb on - strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.349 kb on + strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.350 kb on - strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.455 kb on + strand, within PfGW456L13_4827 at 5390.456 kb on - strand, within PfGW456L13_4827 at 5390.456 kb on - strand, within PfGW456L13_4827 at 5390.456 kb on - strand, within PfGW456L13_4827 at 5390.456 kb on - strand, within PfGW456L13_4827 at 5390.510 kb on + strand, within PfGW456L13_4827 at 5390.511 kb on - strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.515 kb on + strand, within PfGW456L13_4827 at 5390.516 kb on - strand, within PfGW456L13_4827 at 5390.516 kb on - strand, within PfGW456L13_4827 at 5390.516 kb on - strand, within PfGW456L13_4827 at 5390.516 kb on - strand, within PfGW456L13_4827 at 5390.516 kb on - strand, within PfGW456L13_4827 at 5390.516 kb on - strand, within PfGW456L13_4827 at 5390.551 kb on - strand at 5390.597 kb on + strand at 5390.684 kb on + strand at 5390.684 kb on + strand at 5390.684 kb on + strand at 5390.684 kb on + strand at 5390.684 kb on + strand at 5390.685 kb on - strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.686 kb on + strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.687 kb on - strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.690 kb on + strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.691 kb on - strand at 5390.694 kb on + strand at 5390.695 kb on - strand at 5390.695 kb on - strand at 5390.956 kb on + strand, within PfGW456L13_4828 at 5390.956 kb on + strand, within PfGW456L13_4828 at 5390.956 kb on + strand, within PfGW456L13_4828 at 5390.956 kb on + strand, within PfGW456L13_4828 at 5390.957 kb on - strand, within PfGW456L13_4828 at 5390.957 kb on - strand, within PfGW456L13_4828 at 5390.957 kb on - strand, within PfGW456L13_4828 at 5391.013 kb on + strand, within PfGW456L13_4828 at 5391.304 kb on - strand at 5391.304 kb on - strand at 5391.319 kb on - strand at 5391.349 kb on + strand at 5391.350 kb on - strand at 5391.369 kb on - strand at 5391.404 kb on + strand at 5391.404 kb on + strand at 5391.404 kb on + strand at 5391.405 kb on - strand at 5391.415 kb on + strand at 5391.415 kb on + strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.416 kb on - strand at 5391.479 kb on - strand at 5391.491 kb on + strand at 5391.500 kb on + strand at 5391.518 kb on + strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.519 kb on - strand at 5391.522 kb on + strand at 5391.522 kb on + strand at 5391.522 kb on + strand at 5391.522 kb on + strand at 5391.576 kb on + strand at 5391.576 kb on + strand at 5391.576 kb on + strand at 5392.039 kb on - strand, within PfGW456L13_4829 at 5392.039 kb on - strand, within PfGW456L13_4829 at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.209 kb on + strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.210 kb on - strand at 5392.225 kb on - strand at 5392.225 kb on - strand at 5392.227 kb on + strand at 5392.227 kb on + strand at 5392.227 kb on + strand at 5392.227 kb on + strand at 5392.228 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 5,389,890 + -0.4 5,389,890 + +0.2 5,389,890 + -0.8 5,389,891 - +0.7 5,389,891 - +1.0 5,389,891 - +0.5 5,389,891 - -0.6 5,389,891 - +0.7 5,389,891 - -2.0 5,389,891 - +0.5 5,389,891 - +0.3 5,389,891 - +0.4 5,389,891 - +0.4 5,390,026 + +0.6 5,390,027 - +0.6 5,390,027 - -0.1 5,390,027 - -0.4 5,390,152 - PfGW456L13_4827 0.18 -0.7 5,390,203 + PfGW456L13_4827 0.27 -0.1 5,390,203 + PfGW456L13_4827 0.27 -2.2 5,390,203 + PfGW456L13_4827 0.27 -0.8 5,390,203 + PfGW456L13_4827 0.27 -0.8 5,390,203 + PfGW456L13_4827 0.27 -0.0 5,390,204 - PfGW456L13_4827 0.28 +0.0 5,390,204 - PfGW456L13_4827 0.28 -0.3 5,390,204 - PfGW456L13_4827 0.28 -0.7 5,390,349 + PfGW456L13_4827 0.54 -0.7 5,390,349 + PfGW456L13_4827 0.54 +1.2 5,390,349 + PfGW456L13_4827 0.54 +1.2 5,390,349 + PfGW456L13_4827 0.54 -0.4 5,390,349 + PfGW456L13_4827 0.54 +0.9 5,390,349 + PfGW456L13_4827 0.54 -0.2 5,390,349 + PfGW456L13_4827 0.54 +0.4 5,390,349 + PfGW456L13_4827 0.54 +0.2 5,390,349 + PfGW456L13_4827 0.54 +0.6 5,390,349 + PfGW456L13_4827 0.54 +1.0 5,390,349 + PfGW456L13_4827 0.54 +1.2 5,390,349 + PfGW456L13_4827 0.54 +0.6 5,390,349 + PfGW456L13_4827 0.54 -0.6 5,390,349 + PfGW456L13_4827 0.54 +0.2 5,390,349 + PfGW456L13_4827 0.54 +0.6 5,390,349 + PfGW456L13_4827 0.54 -0.4 5,390,349 + PfGW456L13_4827 0.54 +0.0 5,390,349 + PfGW456L13_4827 0.54 -0.7 5,390,350 - PfGW456L13_4827 0.54 +0.6 5,390,350 - PfGW456L13_4827 0.54 +0.9 5,390,350 - PfGW456L13_4827 0.54 -0.9 5,390,350 - PfGW456L13_4827 0.54 -0.6 5,390,350 - PfGW456L13_4827 0.54 +0.3 5,390,350 - PfGW456L13_4827 0.54 +1.2 5,390,350 - PfGW456L13_4827 0.54 +0.7 5,390,350 - PfGW456L13_4827 0.54 +1.5 5,390,350 - PfGW456L13_4827 0.54 -0.7 5,390,350 - PfGW456L13_4827 0.54 -0.7 5,390,350 - PfGW456L13_4827 0.54 -1.0 5,390,350 - PfGW456L13_4827 0.54 -0.5 5,390,350 - PfGW456L13_4827 0.54 -0.7 5,390,350 - PfGW456L13_4827 0.54 -0.5 5,390,455 + PfGW456L13_4827 0.73 +0.6 5,390,455 + PfGW456L13_4827 0.73 -0.9 5,390,455 + PfGW456L13_4827 0.73 -0.8 5,390,455 + PfGW456L13_4827 0.73 -0.2 5,390,455 + PfGW456L13_4827 0.73 -0.5 5,390,455 + PfGW456L13_4827 0.73 -0.3 5,390,455 + PfGW456L13_4827 0.73 +1.1 5,390,455 + PfGW456L13_4827 0.73 +1.0 5,390,456 - PfGW456L13_4827 0.73 +0.5 5,390,456 - PfGW456L13_4827 0.73 +0.5 5,390,456 - PfGW456L13_4827 0.73 -0.0 5,390,456 - PfGW456L13_4827 0.73 -0.8 5,390,510 + PfGW456L13_4827 0.83 +0.8 5,390,511 - PfGW456L13_4827 0.83 +0.3 5,390,515 + PfGW456L13_4827 0.84 -0.0 5,390,515 + PfGW456L13_4827 0.84 +1.0 5,390,515 + PfGW456L13_4827 0.84 -0.5 5,390,515 + PfGW456L13_4827 0.84 +0.1 5,390,515 + PfGW456L13_4827 0.84 +1.3 5,390,515 + PfGW456L13_4827 0.84 +1.5 5,390,515 + PfGW456L13_4827 0.84 -0.3 5,390,515 + PfGW456L13_4827 0.84 +0.8 5,390,516 - PfGW456L13_4827 0.84 -2.0 5,390,516 - PfGW456L13_4827 0.84 +0.6 5,390,516 - PfGW456L13_4827 0.84 +1.8 5,390,516 - PfGW456L13_4827 0.84 -0.8 5,390,516 - PfGW456L13_4827 0.84 -0.5 5,390,516 - PfGW456L13_4827 0.84 -0.6 5,390,551 - +0.6 5,390,597 + -0.2 5,390,684 + -0.7 5,390,684 + +0.5 5,390,684 + -0.0 5,390,684 + +0.7 5,390,684 + -0.6 5,390,685 - -1.0 5,390,686 + -1.5 5,390,686 + -1.1 5,390,686 + +0.8 5,390,686 + -3.2 5,390,686 + +0.6 5,390,686 + -0.0 5,390,686 + +1.1 5,390,686 + +0.5 5,390,686 + -1.5 5,390,687 - -0.7 5,390,687 - +1.5 5,390,687 - -2.3 5,390,687 - -0.0 5,390,687 - -1.9 5,390,687 - -0.9 5,390,687 - -0.4 5,390,687 - -0.8 5,390,687 - -0.4 5,390,687 - -0.3 5,390,687 - -0.0 5,390,690 + +1.2 5,390,690 + -1.3 5,390,690 + -0.7 5,390,690 + +0.8 5,390,690 + +0.1 5,390,690 + -0.4 5,390,690 + +0.3 5,390,690 + -0.9 5,390,690 + +2.3 5,390,690 + +1.0 5,390,690 + +0.2 5,390,690 + +0.7 5,390,690 + -1.0 5,390,690 + +0.6 5,390,690 + +0.0 5,390,690 + +0.8 5,390,690 + +1.2 5,390,690 + -1.3 5,390,690 + -0.7 5,390,690 + +0.3 5,390,690 + +0.1 5,390,690 + +2.1 5,390,690 + -0.2 5,390,690 + +0.2 5,390,690 + -1.5 5,390,690 + +0.1 5,390,691 - -0.0 5,390,691 - +0.2 5,390,691 - -0.3 5,390,691 - -0.8 5,390,691 - -1.1 5,390,691 - -0.1 5,390,691 - -0.2 5,390,691 - -0.9 5,390,691 - +0.2 5,390,691 - -0.3 5,390,691 - -0.8 5,390,691 - -0.9 5,390,691 - -1.3 5,390,691 - -0.0 5,390,691 - -1.6 5,390,691 - -0.8 5,390,691 - -0.2 5,390,691 - -0.8 5,390,694 + -0.7 5,390,695 - -0.5 5,390,695 - +0.5 5,390,956 + PfGW456L13_4828 0.46 -1.5 5,390,956 + PfGW456L13_4828 0.46 -0.4 5,390,956 + PfGW456L13_4828 0.46 -2.2 5,390,956 + PfGW456L13_4828 0.46 -1.0 5,390,957 - PfGW456L13_4828 0.46 -3.3 5,390,957 - PfGW456L13_4828 0.46 -1.6 5,390,957 - PfGW456L13_4828 0.46 +0.4 5,391,013 + PfGW456L13_4828 0.57 -0.2 5,391,304 - -0.0 5,391,304 - +1.4 5,391,319 - -2.5 5,391,349 + -0.0 5,391,350 - +0.1 5,391,369 - +0.2 5,391,404 + -0.5 5,391,404 + -0.2 5,391,404 + -0.7 5,391,405 - +0.5 5,391,415 + -0.7 5,391,415 + -0.1 5,391,416 - +0.3 5,391,416 - -0.3 5,391,416 - -1.7 5,391,416 - -0.4 5,391,416 - +0.9 5,391,479 - -1.2 5,391,491 + +0.5 5,391,500 + -1.1 5,391,518 + +0.4 5,391,519 - +0.7 5,391,519 - -0.1 5,391,519 - +0.4 5,391,519 - +0.6 5,391,519 - +0.2 5,391,519 - +0.4 5,391,522 + -0.5 5,391,522 + +0.2 5,391,522 + +0.1 5,391,522 + -1.0 5,391,576 + -1.2 5,391,576 + +1.1 5,391,576 + -0.4 5,392,039 - PfGW456L13_4829 0.70 -1.0 5,392,039 - PfGW456L13_4829 0.70 +0.1 5,392,209 + +0.7 5,392,209 + +0.4 5,392,209 + +0.1 5,392,209 + -1.3 5,392,209 + -0.3 5,392,210 - +0.3 5,392,210 - -0.0 5,392,210 - -1.0 5,392,210 - -2.0 5,392,210 - +0.1 5,392,210 - -1.5 5,392,210 - +0.5 5,392,210 - -0.0 5,392,210 - +0.4 5,392,225 - -0.8 5,392,225 - -0.1 5,392,227 + +0.1 5,392,227 + +1.6 5,392,227 + +0.2 5,392,227 + -1.8 5,392,228 - +0.3
Or see this region's nucleotide sequence