Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4809

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4807 and PfGW456L13_4808 are separated by 186 nucleotidesPfGW456L13_4808 and PfGW456L13_4809 are separated by 190 nucleotidesPfGW456L13_4809 and PfGW456L13_4810 are separated by 2 nucleotidesPfGW456L13_4810 and PfGW456L13_4811 are separated by 153 nucleotides PfGW456L13_4807 - ATP-dependent protease La (EC 3.4.21.53) Type I, at 5,367,380 to 5,369,797 _4807 PfGW456L13_4808 - hypothetical protein, at 5,369,984 to 5,370,442 _4808 PfGW456L13_4809 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 5,370,633 to 5,371,025 _4809 PfGW456L13_4810 - POSSIBLE MEMBRANE PROTEIN, at 5,371,028 to 5,371,663 _4810 PfGW456L13_4811 - tRNA (uridine-5-oxyacetic acid methyl ester) 34 synthase, at 5,371,817 to 5,372,596 _4811 Position (kb) 5370 5371 5372Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5369.730 kb on - strandat 5369.730 kb on - strandat 5369.800 kb on - strandat 5369.861 kb on - strandat 5369.875 kb on - strandat 5369.875 kb on - strandat 5369.875 kb on - strandat 5369.878 kb on + strandat 5369.878 kb on + strandat 5369.878 kb on + strandat 5369.879 kb on - strandat 5369.879 kb on - strandat 5369.882 kb on - strandat 5369.890 kb on - strandat 5369.896 kb on - strandat 5369.910 kb on + strandat 5369.910 kb on + strandat 5369.911 kb on - strandat 5369.911 kb on - strandat 5369.911 kb on - strandat 5369.931 kb on + strandat 5369.931 kb on + strandat 5369.932 kb on - strandat 5369.932 kb on - strandat 5369.932 kb on - strandat 5369.932 kb on - strandat 5369.932 kb on - strandat 5370.200 kb on + strand, within PfGW456L13_4808at 5370.200 kb on + strand, within PfGW456L13_4808at 5370.200 kb on + strand, within PfGW456L13_4808at 5370.201 kb on - strandat 5370.201 kb on - strand, within PfGW456L13_4808at 5370.201 kb on - strand, within PfGW456L13_4808at 5370.201 kb on - strand, within PfGW456L13_4808at 5370.214 kb on + strand, within PfGW456L13_4808at 5370.215 kb on - strand, within PfGW456L13_4808at 5370.230 kb on + strand, within PfGW456L13_4808at 5370.230 kb on + strand, within PfGW456L13_4808at 5370.231 kb on - strand, within PfGW456L13_4808at 5370.252 kb on - strand, within PfGW456L13_4808at 5370.269 kb on + strand, within PfGW456L13_4808at 5370.286 kb on + strand, within PfGW456L13_4808at 5370.290 kb on + strand, within PfGW456L13_4808at 5370.291 kb on - strand, within PfGW456L13_4808at 5370.291 kb on - strand, within PfGW456L13_4808at 5370.291 kb on - strand, within PfGW456L13_4808at 5370.370 kb on + strand, within PfGW456L13_4808at 5370.441 kb on - strandat 5370.454 kb on + strandat 5370.455 kb on - strandat 5370.501 kb on + strandat 5370.502 kb on - strandat 5370.502 kb on - strandat 5370.502 kb on - strandat 5370.547 kb on + strandat 5370.547 kb on + strandat 5370.547 kb on + strandat 5370.548 kb on - strandat 5370.548 kb on - strandat 5370.548 kb on - strandat 5370.548 kb on - strandat 5371.074 kb on - strandat 5371.301 kb on + strand, within PfGW456L13_4810at 5371.301 kb on + strand, within PfGW456L13_4810at 5371.301 kb on + strand, within PfGW456L13_4810at 5371.302 kb on - strand, within PfGW456L13_4810at 5371.425 kb on - strand, within PfGW456L13_4810at 5371.589 kb on + strand, within PfGW456L13_4810at 5371.590 kb on - strand, within PfGW456L13_4810at 5371.590 kb on - strand, within PfGW456L13_4810at 5371.607 kb on + strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.608 kb on - strandat 5371.694 kb on + strandat 5371.694 kb on + strandat 5371.694 kb on + strandat 5371.695 kb on - strandat 5371.695 kb on - strandat 5371.695 kb on - strandat 5371.737 kb on + strandat 5371.737 kb on + strandat 5371.737 kb on + strandat 5371.738 kb on - strandat 5371.738 kb on - strandat 5371.738 kb on - strandat 5371.738 kb on - strandat 5371.835 kb on + strandat 5371.835 kb on + strandat 5371.835 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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5,369,730 - -0.4
5,369,730 - -0.7
5,369,800 - +0.5
5,369,861 - -0.2
5,369,875 - +0.3
5,369,875 - -1.3
5,369,875 - -1.0
5,369,878 + +0.5
5,369,878 + -0.5
5,369,878 + +1.1
5,369,879 - -0.5
5,369,879 - +0.1
5,369,882 - -0.4
5,369,890 - -0.4
5,369,896 - -0.0
5,369,910 + -1.8
5,369,910 + +0.3
5,369,911 - +0.2
5,369,911 - -0.8
5,369,911 - -0.5
5,369,931 + +0.4
5,369,931 + -0.2
5,369,932 - +0.2
5,369,932 - +0.2
5,369,932 - +0.6
5,369,932 - -1.0
5,369,932 - -0.0
5,370,200 + PfGW456L13_4808 0.47 +0.3
5,370,200 + PfGW456L13_4808 0.47 -0.0
5,370,200 + PfGW456L13_4808 0.47 -0.5
5,370,201 - -0.0
5,370,201 - PfGW456L13_4808 0.47 +1.2
5,370,201 - PfGW456L13_4808 0.47 +1.2
5,370,201 - PfGW456L13_4808 0.47 -1.2
5,370,214 + PfGW456L13_4808 0.50 -0.5
5,370,215 - PfGW456L13_4808 0.50 +1.0
5,370,230 + PfGW456L13_4808 0.54 +0.1
5,370,230 + PfGW456L13_4808 0.54 +0.7
5,370,231 - PfGW456L13_4808 0.54 -0.4
5,370,252 - PfGW456L13_4808 0.58 -0.1
5,370,269 + PfGW456L13_4808 0.62 -0.0
5,370,286 + PfGW456L13_4808 0.66 +0.1
5,370,290 + PfGW456L13_4808 0.67 +0.3
5,370,291 - PfGW456L13_4808 0.67 +1.1
5,370,291 - PfGW456L13_4808 0.67 -0.1
5,370,291 - PfGW456L13_4808 0.67 -0.3
5,370,370 + PfGW456L13_4808 0.84 -0.6
5,370,441 - -0.4
5,370,454 + +0.2
5,370,455 - +0.5
5,370,501 + +0.5
5,370,502 - +0.4
5,370,502 - -0.6
5,370,502 - -1.6
5,370,547 + +0.2
5,370,547 + -0.1
5,370,547 + +0.7
5,370,548 - -0.2
5,370,548 - -1.3
5,370,548 - -0.5
5,370,548 - -0.0
5,371,074 - +0.4
5,371,301 + PfGW456L13_4810 0.43 -0.3
5,371,301 + PfGW456L13_4810 0.43 +0.2
5,371,301 + PfGW456L13_4810 0.43 +0.1
5,371,302 - PfGW456L13_4810 0.43 +0.3
5,371,425 - PfGW456L13_4810 0.62 +3.0
5,371,589 + PfGW456L13_4810 0.88 +1.0
5,371,590 - PfGW456L13_4810 0.88 +0.3
5,371,590 - PfGW456L13_4810 0.88 +0.1
5,371,607 + +1.2
5,371,608 - -0.9
5,371,608 - -0.6
5,371,608 - +0.6
5,371,608 - -1.4
5,371,608 - +0.6
5,371,694 + +0.5
5,371,694 + -0.8
5,371,694 + +0.2
5,371,695 - -0.9
5,371,695 - -0.5
5,371,695 - +2.3
5,371,737 + -0.2
5,371,737 + -0.4
5,371,737 + -1.4
5,371,738 - -2.4
5,371,738 - -0.0
5,371,738 - -0.4
5,371,738 - -2.6
5,371,835 + -0.6
5,371,835 + -0.6
5,371,835 + -0.3

Or see this region's nucleotide sequence