Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4663 and PfGW456L13_4664 are separated by 189 nucleotides PfGW456L13_4664 and PfGW456L13_4665 are separated by 0 nucleotides PfGW456L13_4665 and PfGW456L13_4666 are separated by 481 nucleotides
PfGW456L13_4663 - FIG074102: hypothetical protein, at 5,202,992 to 5,203,750
_4663
PfGW456L13_4664 - Putative NADPH-quinone reductase (modulator of drug activity B), at 5,203,940 to 5,204,362
_4664
PfGW456L13_4665 - FIG00957354: hypothetical protein, at 5,204,363 to 5,204,557
_4665
PfGW456L13_4666 - Decarboxylase family protein, at 5,205,039 to 5,206,157
_4666
Position (kb) 5204
5205 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5203.389 kb on + strand, within PfGW456L13_4663 at 5203.389 kb on + strand, within PfGW456L13_4663 at 5203.390 kb on - strand, within PfGW456L13_4663 at 5203.390 kb on - strand, within PfGW456L13_4663 at 5203.410 kb on + strand, within PfGW456L13_4663 at 5203.410 kb on + strand, within PfGW456L13_4663 at 5203.410 kb on + strand, within PfGW456L13_4663 at 5203.411 kb on - strand, within PfGW456L13_4663 at 5203.411 kb on - strand, within PfGW456L13_4663 at 5203.411 kb on - strand, within PfGW456L13_4663 at 5203.411 kb on - strand, within PfGW456L13_4663 at 5203.411 kb on - strand, within PfGW456L13_4663 at 5203.713 kb on - strand at 5203.741 kb on + strand at 5203.823 kb on - strand at 5203.858 kb on + strand at 5203.858 kb on + strand at 5203.859 kb on - strand at 5203.868 kb on + strand at 5203.869 kb on - strand at 5203.870 kb on + strand at 5203.952 kb on - strand at 5204.108 kb on + strand, within PfGW456L13_4664 at 5204.108 kb on + strand, within PfGW456L13_4664 at 5204.109 kb on - strand, within PfGW456L13_4664 at 5204.109 kb on - strand, within PfGW456L13_4664 at 5204.195 kb on + strand, within PfGW456L13_4664 at 5204.196 kb on - strand, within PfGW456L13_4664 at 5204.196 kb on - strand, within PfGW456L13_4664 at 5204.196 kb on - strand, within PfGW456L13_4664 at 5204.196 kb on - strand, within PfGW456L13_4664 at 5204.196 kb on - strand, within PfGW456L13_4664 at 5204.271 kb on - strand, within PfGW456L13_4664 at 5204.360 kb on + strand at 5204.361 kb on - strand at 5204.361 kb on - strand at 5204.520 kb on + strand, within PfGW456L13_4665 at 5204.521 kb on - strand, within PfGW456L13_4665 at 5204.616 kb on + strand at 5204.616 kb on + strand at 5204.616 kb on + strand at 5204.617 kb on - strand at 5204.617 kb on - strand at 5204.617 kb on - strand at 5204.617 kb on - strand at 5204.617 kb on - strand at 5204.617 kb on - strand at 5204.661 kb on + strand at 5204.662 kb on - strand at 5204.662 kb on - strand at 5204.662 kb on - strand at 5204.666 kb on + strand at 5204.666 kb on + strand at 5204.666 kb on + strand at 5204.666 kb on + strand at 5204.667 kb on - strand at 5204.667 kb on - strand at 5204.667 kb on - strand at 5204.667 kb on - strand at 5204.667 kb on - strand at 5204.670 kb on - strand at 5204.801 kb on + strand at 5204.801 kb on + strand at 5204.802 kb on - strand at 5204.863 kb on + strand at 5204.863 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.937 kb on + strand at 5204.938 kb on - strand at 5204.938 kb on - strand at 5204.938 kb on - strand at 5204.938 kb on - strand at 5204.938 kb on - strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.997 kb on + strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5204.998 kb on - strand at 5205.045 kb on + strand at 5205.046 kb on - strand at 5205.168 kb on - strand, within PfGW456L13_4666 at 5205.185 kb on - strand, within PfGW456L13_4666 at 5205.185 kb on - strand, within PfGW456L13_4666 at 5205.185 kb on - strand, within PfGW456L13_4666 at 5205.342 kb on + strand, within PfGW456L13_4666 at 5205.342 kb on + strand, within PfGW456L13_4666 at 5205.342 kb on + strand, within PfGW456L13_4666 at 5205.343 kb on - strand, within PfGW456L13_4666 at 5205.343 kb on - strand, within PfGW456L13_4666 at 5205.343 kb on - strand, within PfGW456L13_4666 at 5205.474 kb on - strand, within PfGW456L13_4666
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 5,203,389 + PfGW456L13_4663 0.52 +0.8 5,203,389 + PfGW456L13_4663 0.52 -0.1 5,203,390 - PfGW456L13_4663 0.52 +0.1 5,203,390 - PfGW456L13_4663 0.52 +1.4 5,203,410 + PfGW456L13_4663 0.55 -0.3 5,203,410 + PfGW456L13_4663 0.55 -0.1 5,203,410 + PfGW456L13_4663 0.55 +0.7 5,203,411 - PfGW456L13_4663 0.55 -0.8 5,203,411 - PfGW456L13_4663 0.55 -1.5 5,203,411 - PfGW456L13_4663 0.55 +1.9 5,203,411 - PfGW456L13_4663 0.55 -1.2 5,203,411 - PfGW456L13_4663 0.55 +0.1 5,203,713 - +1.9 5,203,741 + +0.5 5,203,823 - -0.1 5,203,858 + +0.7 5,203,858 + +0.1 5,203,859 - +0.3 5,203,868 + -1.4 5,203,869 - +0.7 5,203,870 + -0.4 5,203,952 - -0.4 5,204,108 + PfGW456L13_4664 0.40 +0.5 5,204,108 + PfGW456L13_4664 0.40 -1.4 5,204,109 - PfGW456L13_4664 0.40 +0.8 5,204,109 - PfGW456L13_4664 0.40 +0.6 5,204,195 + PfGW456L13_4664 0.60 -0.1 5,204,196 - PfGW456L13_4664 0.61 +0.1 5,204,196 - PfGW456L13_4664 0.61 -0.2 5,204,196 - PfGW456L13_4664 0.61 +1.1 5,204,196 - PfGW456L13_4664 0.61 -0.1 5,204,196 - PfGW456L13_4664 0.61 +0.1 5,204,271 - PfGW456L13_4664 0.78 +0.9 5,204,360 + +0.7 5,204,361 - +1.7 5,204,361 - -0.5 5,204,520 + PfGW456L13_4665 0.81 -3.1 5,204,521 - PfGW456L13_4665 0.81 -0.9 5,204,616 + -1.4 5,204,616 + +0.1 5,204,616 + +1.1 5,204,617 - -1.3 5,204,617 - -0.1 5,204,617 - +0.9 5,204,617 - -0.5 5,204,617 - +1.0 5,204,617 - -0.1 5,204,661 + -0.1 5,204,662 - -0.2 5,204,662 - +2.8 5,204,662 - +1.3 5,204,666 + -1.5 5,204,666 + -0.4 5,204,666 + +0.5 5,204,666 + -0.1 5,204,667 - +1.7 5,204,667 - -0.8 5,204,667 - +0.7 5,204,667 - +0.3 5,204,667 - -0.7 5,204,670 - +1.2 5,204,801 + -0.5 5,204,801 + +0.1 5,204,802 - +0.0 5,204,863 + +0.0 5,204,863 + -0.1 5,204,937 + -0.7 5,204,937 + +0.2 5,204,937 + -0.5 5,204,937 + -0.9 5,204,937 + +1.2 5,204,937 + +0.0 5,204,937 + +0.1 5,204,937 + -0.1 5,204,937 + +0.1 5,204,937 + -0.6 5,204,937 + +0.4 5,204,937 + +1.5 5,204,937 + -0.6 5,204,938 - -0.6 5,204,938 - +0.7 5,204,938 - -0.6 5,204,938 - -2.1 5,204,938 - -1.5 5,204,997 + +0.6 5,204,997 + +0.2 5,204,997 + -0.1 5,204,997 + +0.8 5,204,997 + -1.1 5,204,997 + +1.7 5,204,997 + +0.2 5,204,997 + -1.5 5,204,997 + +1.9 5,204,997 + -1.9 5,204,997 + +1.1 5,204,997 + +2.9 5,204,997 + +0.2 5,204,997 + -0.5 5,204,998 - -0.4 5,204,998 - +0.1 5,204,998 - +0.9 5,204,998 - +0.4 5,204,998 - -2.5 5,204,998 - -0.7 5,204,998 - -0.4 5,204,998 - +2.3 5,204,998 - +0.4 5,204,998 - +0.1 5,204,998 - -0.6 5,204,998 - -0.1 5,205,045 + -2.2 5,205,046 - +0.8 5,205,168 - PfGW456L13_4666 0.12 +1.3 5,205,185 - PfGW456L13_4666 0.13 +0.8 5,205,185 - PfGW456L13_4666 0.13 -0.3 5,205,185 - PfGW456L13_4666 0.13 -0.8 5,205,342 + PfGW456L13_4666 0.27 +0.4 5,205,342 + PfGW456L13_4666 0.27 +1.0 5,205,342 + PfGW456L13_4666 0.27 +0.6 5,205,343 - PfGW456L13_4666 0.27 +0.1 5,205,343 - PfGW456L13_4666 0.27 -0.5 5,205,343 - PfGW456L13_4666 0.27 +0.5 5,205,474 - PfGW456L13_4666 0.39 -0.5
Or see this region's nucleotide sequence