Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4374

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4371 and PfGW456L13_4372 overlap by 27 nucleotidesPfGW456L13_4372 and PfGW456L13_4373 overlap by 41 nucleotidesPfGW456L13_4373 and PfGW456L13_4374 are separated by 29 nucleotidesPfGW456L13_4374 and PfGW456L13_4375 overlap by 4 nucleotides PfGW456L13_4371 - O-antigen biosynthesis protein, at 4,881,375 to 4,884,299 _4371 PfGW456L13_4372 - hypothetical protein, at 4,884,273 to 4,884,392 _4372 PfGW456L13_4373 - Cephalosporin hydroxylase, at 4,884,352 to 4,885,080 _4373 PfGW456L13_4374 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase (EC 2.3.1.89), at 4,885,110 to 4,885,775 _4374 PfGW456L13_4375 - perosamine synthetase, at 4,885,772 to 4,886,893 _4375 Position (kb) 4885 4886Strain fitness (log2 ratio) -2 -1 0 1 2at 4884.190 kb on + strandat 4884.191 kb on - strandat 4884.299 kb on + strandat 4884.299 kb on + strandat 4884.299 kb on + strandat 4884.299 kb on + strandat 4884.299 kb on + strandat 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strandat 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.300 kb on - strand, within PfGW456L13_4372at 4884.371 kb on + strandat 4884.371 kb on + strandat 4884.371 kb on + strandat 4884.372 kb on - strandat 4884.372 kb on - strandat 4884.449 kb on + strand, within PfGW456L13_4373at 4884.449 kb on + strand, within PfGW456L13_4373at 4884.449 kb on + strand, within PfGW456L13_4373at 4884.449 kb on + strand, within PfGW456L13_4373at 4884.449 kb on + strand, within PfGW456L13_4373at 4884.449 kb on + strand, within PfGW456L13_4373at 4884.450 kb on - strand, within PfGW456L13_4373at 4884.450 kb on - strand, within PfGW456L13_4373at 4884.551 kb on + strand, within PfGW456L13_4373at 4884.551 kb on + strand, within PfGW456L13_4373at 4884.552 kb on - strand, within PfGW456L13_4373at 4884.552 kb on - strand, within PfGW456L13_4373at 4884.578 kb on + strand, within PfGW456L13_4373at 4884.821 kb on + strand, within PfGW456L13_4373at 4884.956 kb on + strand, within PfGW456L13_4373at 4884.956 kb on + strand, within PfGW456L13_4373at 4884.956 kb on + strand, within PfGW456L13_4373at 4884.956 kb on + strand, within PfGW456L13_4373at 4884.957 kb on - strand, within PfGW456L13_4373at 4884.957 kb on - strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.962 kb on + strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.963 kb on - strand, within PfGW456L13_4373at 4884.966 kb on + strand, within PfGW456L13_4373at 4884.966 kb on + strand, within PfGW456L13_4373at 4884.966 kb on + strand, within PfGW456L13_4373at 4884.966 kb on + strand, within PfGW456L13_4373at 4884.966 kb on + strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4884.967 kb on - strand, within PfGW456L13_4373at 4885.049 kb on - strandat 4885.049 kb on - strandat 4885.112 kb on - strandat 4885.189 kb on + strand, within PfGW456L13_4374at 4885.400 kb on + strand, within PfGW456L13_4374at 4885.447 kb on + strand, within PfGW456L13_4374at 4885.447 kb on + strand, within PfGW456L13_4374at 4885.447 kb on + strand, within PfGW456L13_4374at 4885.447 kb on + strand, within PfGW456L13_4374at 4885.447 kb on + strand, within PfGW456L13_4374at 4885.448 kb on - strand, within PfGW456L13_4374at 4885.448 kb on - strand, within PfGW456L13_4374at 4885.448 kb on - strand, within PfGW456L13_4374at 4885.448 kb on - strand, within PfGW456L13_4374at 4885.448 kb on - strand, within PfGW456L13_4374at 4885.589 kb on + strand, within PfGW456L13_4374at 4885.645 kb on + strand, within PfGW456L13_4374at 4885.765 kb on + strandat 4885.794 kb on - strandat 4885.852 kb on - strandat 4886.115 kb on + strand, within PfGW456L13_4375at 4886.115 kb on + strand, within PfGW456L13_4375at 4886.115 kb on + strand, within PfGW456L13_4375at 4886.116 kb on - strand, within PfGW456L13_4375at 4886.116 kb on - strand, within PfGW456L13_4375at 4886.116 kb on - strand, within PfGW456L13_4375at 4886.116 kb on - strand, within PfGW456L13_4375at 4886.116 kb on - strand, within PfGW456L13_4375at 4886.158 kb on + strand, within PfGW456L13_4375at 4886.159 kb on - strand, within PfGW456L13_4375at 4886.159 kb on - strand, within PfGW456L13_4375at 4886.292 kb on + strand, within PfGW456L13_4375at 4886.292 kb on + strand, within PfGW456L13_4375at 4886.293 kb on - strand, within PfGW456L13_4375at 4886.503 kb on - strand, within PfGW456L13_4375at 4886.540 kb on - strand, within PfGW456L13_4375at 4886.540 kb on - strand, within PfGW456L13_4375at 4886.619 kb on + strand, within PfGW456L13_4375at 4886.619 kb on + strand, within PfGW456L13_4375at 4886.619 kb on + strand, within PfGW456L13_4375at 4886.620 kb on - strand, within PfGW456L13_4375at 4886.620 kb on - strand, within PfGW456L13_4375at 4886.745 kb on + strand, within PfGW456L13_4375at 4886.745 kb on + strand, within PfGW456L13_4375at 4886.746 kb on - strand, within PfGW456L13_4375

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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4,884,190 + -0.7
4,884,191 - -0.8
4,884,299 + +1.8
4,884,299 + +0.1
4,884,299 + -1.4
4,884,299 + +0.1
4,884,299 + -0.6
4,884,300 - PfGW456L13_4372 0.23 -0.2
4,884,300 - -0.2
4,884,300 - PfGW456L13_4372 0.23 +0.5
4,884,300 - PfGW456L13_4372 0.23 +0.2
4,884,300 - PfGW456L13_4372 0.23 -0.9
4,884,300 - PfGW456L13_4372 0.23 +1.1
4,884,300 - PfGW456L13_4372 0.23 -0.9
4,884,300 - PfGW456L13_4372 0.23 +0.6
4,884,300 - PfGW456L13_4372 0.23 +0.1
4,884,300 - PfGW456L13_4372 0.23 +0.2
4,884,371 + -0.6
4,884,371 + -0.2
4,884,371 + -0.6
4,884,372 - +1.3
4,884,372 - +0.0
4,884,449 + PfGW456L13_4373 0.13 +0.8
4,884,449 + PfGW456L13_4373 0.13 -1.1
4,884,449 + PfGW456L13_4373 0.13 -0.1
4,884,449 + PfGW456L13_4373 0.13 +1.2
4,884,449 + PfGW456L13_4373 0.13 +1.1
4,884,449 + PfGW456L13_4373 0.13 -1.6
4,884,450 - PfGW456L13_4373 0.13 -1.8
4,884,450 - PfGW456L13_4373 0.13 +0.1
4,884,551 + PfGW456L13_4373 0.27 -0.5
4,884,551 + PfGW456L13_4373 0.27 -0.8
4,884,552 - PfGW456L13_4373 0.27 -0.3
4,884,552 - PfGW456L13_4373 0.27 +0.4
4,884,578 + PfGW456L13_4373 0.31 -0.2
4,884,821 + PfGW456L13_4373 0.64 -1.1
4,884,956 + PfGW456L13_4373 0.83 -0.7
4,884,956 + PfGW456L13_4373 0.83 -0.2
4,884,956 + PfGW456L13_4373 0.83 +1.2
4,884,956 + PfGW456L13_4373 0.83 +0.8
4,884,957 - PfGW456L13_4373 0.83 +1.3
4,884,957 - PfGW456L13_4373 0.83 +0.0
4,884,962 + PfGW456L13_4373 0.84 -0.7
4,884,962 + PfGW456L13_4373 0.84 -1.1
4,884,962 + PfGW456L13_4373 0.84 +0.1
4,884,962 + PfGW456L13_4373 0.84 +0.3
4,884,962 + PfGW456L13_4373 0.84 +0.5
4,884,962 + PfGW456L13_4373 0.84 -0.7
4,884,962 + PfGW456L13_4373 0.84 +0.8
4,884,962 + PfGW456L13_4373 0.84 +1.0
4,884,962 + PfGW456L13_4373 0.84 +0.1
4,884,962 + PfGW456L13_4373 0.84 +0.1
4,884,962 + PfGW456L13_4373 0.84 -0.2
4,884,962 + PfGW456L13_4373 0.84 -0.9
4,884,962 + PfGW456L13_4373 0.84 +1.1
4,884,962 + PfGW456L13_4373 0.84 -0.2
4,884,962 + PfGW456L13_4373 0.84 +1.0
4,884,962 + PfGW456L13_4373 0.84 -0.9
4,884,962 + PfGW456L13_4373 0.84 +1.7
4,884,962 + PfGW456L13_4373 0.84 +0.9
4,884,962 + PfGW456L13_4373 0.84 +1.6
4,884,962 + PfGW456L13_4373 0.84 +1.3
4,884,963 - PfGW456L13_4373 0.84 +0.8
4,884,963 - PfGW456L13_4373 0.84 -0.8
4,884,963 - PfGW456L13_4373 0.84 -0.4
4,884,963 - PfGW456L13_4373 0.84 +0.1
4,884,963 - PfGW456L13_4373 0.84 +0.1
4,884,963 - PfGW456L13_4373 0.84 -0.3
4,884,963 - PfGW456L13_4373 0.84 -0.8
4,884,966 + PfGW456L13_4373 0.84 +0.2
4,884,966 + PfGW456L13_4373 0.84 +0.1
4,884,966 + PfGW456L13_4373 0.84 -1.3
4,884,966 + PfGW456L13_4373 0.84 -0.2
4,884,966 + PfGW456L13_4373 0.84 +0.5
4,884,967 - PfGW456L13_4373 0.84 +1.0
4,884,967 - PfGW456L13_4373 0.84 +1.4
4,884,967 - PfGW456L13_4373 0.84 -0.5
4,884,967 - PfGW456L13_4373 0.84 -0.2
4,884,967 - PfGW456L13_4373 0.84 +0.8
4,884,967 - PfGW456L13_4373 0.84 +0.2
4,884,967 - PfGW456L13_4373 0.84 +0.8
4,884,967 - PfGW456L13_4373 0.84 -0.7
4,885,049 - +0.2
4,885,049 - -0.3
4,885,112 - +0.7
4,885,189 + PfGW456L13_4374 0.12 +0.4
4,885,400 + PfGW456L13_4374 0.44 -2.0
4,885,447 + PfGW456L13_4374 0.51 -0.3
4,885,447 + PfGW456L13_4374 0.51 +0.7
4,885,447 + PfGW456L13_4374 0.51 +0.1
4,885,447 + PfGW456L13_4374 0.51 -0.1
4,885,447 + PfGW456L13_4374 0.51 +0.4
4,885,448 - PfGW456L13_4374 0.51 +1.2
4,885,448 - PfGW456L13_4374 0.51 +0.8
4,885,448 - PfGW456L13_4374 0.51 +0.1
4,885,448 - PfGW456L13_4374 0.51 -1.1
4,885,448 - PfGW456L13_4374 0.51 +1.0
4,885,589 + PfGW456L13_4374 0.72 -0.8
4,885,645 + PfGW456L13_4374 0.80 -2.7
4,885,765 + +0.8
4,885,794 - +2.3
4,885,852 - -0.8
4,886,115 + PfGW456L13_4375 0.31 -0.7
4,886,115 + PfGW456L13_4375 0.31 -0.7
4,886,115 + PfGW456L13_4375 0.31 +0.6
4,886,116 - PfGW456L13_4375 0.31 -0.5
4,886,116 - PfGW456L13_4375 0.31 +1.4
4,886,116 - PfGW456L13_4375 0.31 +0.7
4,886,116 - PfGW456L13_4375 0.31 +0.7
4,886,116 - PfGW456L13_4375 0.31 +0.1
4,886,158 + PfGW456L13_4375 0.34 +0.7
4,886,159 - PfGW456L13_4375 0.34 -0.1
4,886,159 - PfGW456L13_4375 0.34 -1.4
4,886,292 + PfGW456L13_4375 0.46 -0.2
4,886,292 + PfGW456L13_4375 0.46 -0.4
4,886,293 - PfGW456L13_4375 0.46 +0.2
4,886,503 - PfGW456L13_4375 0.65 -1.2
4,886,540 - PfGW456L13_4375 0.68 -0.2
4,886,540 - PfGW456L13_4375 0.68 -2.4
4,886,619 + PfGW456L13_4375 0.75 +1.3
4,886,619 + PfGW456L13_4375 0.75 +0.3
4,886,619 + PfGW456L13_4375 0.75 -0.5
4,886,620 - PfGW456L13_4375 0.76 +0.9
4,886,620 - PfGW456L13_4375 0.76 -0.6
4,886,745 + PfGW456L13_4375 0.87 -0.2
4,886,745 + PfGW456L13_4375 0.87 +0.2
4,886,746 - PfGW456L13_4375 0.87 +0.5

Or see this region's nucleotide sequence