Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_4346

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_4345 and PfGW456L13_4346 are separated by 100 nucleotidesPfGW456L13_4346 and PfGW456L13_4347 are separated by 30 nucleotides PfGW456L13_4345 - Flagellar hook-length control protein FliK, at 4,855,171 to 4,856,523 _4345 PfGW456L13_4346 - Hpt domain protein, at 4,856,624 to 4,856,974 _4346 PfGW456L13_4347 - Serine phosphatase RsbU, regulator of sigma subunit, at 4,857,005 to 4,858,711 _4347 Position (kb) 4856 4857Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4855.806 kb on + strand, within PfGW456L13_4345at 4855.925 kb on - strand, within PfGW456L13_4345at 4856.029 kb on + strand, within PfGW456L13_4345at 4856.030 kb on - strand, within PfGW456L13_4345at 4856.030 kb on - strand, within PfGW456L13_4345at 4856.105 kb on - strand, within PfGW456L13_4345at 4856.116 kb on + strand, within PfGW456L13_4345at 4856.116 kb on + strand, within PfGW456L13_4345at 4856.133 kb on + strand, within PfGW456L13_4345at 4856.133 kb on + strandat 4856.133 kb on + strand, within PfGW456L13_4345at 4856.133 kb on + strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.134 kb on - strand, within PfGW456L13_4345at 4856.399 kb on + strandat 4856.400 kb on - strandat 4856.400 kb on - strandat 4856.551 kb on + strandat 4856.551 kb on + strandat 4856.551 kb on + strandat 4856.551 kb on + strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.552 kb on - strandat 4856.556 kb on - strandat 4856.661 kb on + strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4856.789 kb on - strand, within PfGW456L13_4346at 4857.006 kb on + strandat 4857.006 kb on + strandat 4857.026 kb on - strandat 4857.026 kb on - strandat 4857.026 kb on - strandat 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.233 kb on + strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.234 kb on - strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.237 kb on + strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.238 kb on - strand, within PfGW456L13_4347at 4857.249 kb on - strand, within PfGW456L13_4347at 4857.249 kb on - strand, within PfGW456L13_4347at 4857.249 kb on - strand, within PfGW456L13_4347at 4857.279 kb on + strand, within PfGW456L13_4347at 4857.283 kb on - strand, within PfGW456L13_4347at 4857.357 kb on + strand, within PfGW456L13_4347at 4857.358 kb on - strand, within PfGW456L13_4347at 4857.358 kb on - strand, within PfGW456L13_4347at 4857.358 kb on - strand, within PfGW456L13_4347at 4857.378 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.435 kb on + strand, within PfGW456L13_4347at 4857.436 kb on - strand, within PfGW456L13_4347at 4857.436 kb on - strand, within PfGW456L13_4347at 4857.436 kb on - strand, within PfGW456L13_4347at 4857.486 kb on - strand, within PfGW456L13_4347at 4857.486 kb on - strand, within PfGW456L13_4347at 4857.526 kb on - strand, within PfGW456L13_4347at 4857.526 kb on - strand, within PfGW456L13_4347at 4857.526 kb on - strand, within PfGW456L13_4347at 4857.526 kb on - strand, within PfGW456L13_4347at 4857.580 kb on + strand, within PfGW456L13_4347at 4857.580 kb on + strand, within PfGW456L13_4347at 4857.581 kb on - strand, within PfGW456L13_4347at 4857.581 kb on - strand, within PfGW456L13_4347at 4857.581 kb on - strand, within PfGW456L13_4347at 4857.743 kb on + strand, within PfGW456L13_4347at 4857.744 kb on - strand, within PfGW456L13_4347at 4857.744 kb on - strand, within PfGW456L13_4347at 4857.784 kb on + strand, within PfGW456L13_4347

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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4,855,806 + PfGW456L13_4345 0.47 +0.0
4,855,925 - PfGW456L13_4345 0.56 +0.2
4,856,029 + PfGW456L13_4345 0.63 +0.1
4,856,030 - PfGW456L13_4345 0.63 -0.0
4,856,030 - PfGW456L13_4345 0.63 -0.4
4,856,105 - PfGW456L13_4345 0.69 +0.8
4,856,116 + PfGW456L13_4345 0.70 -0.6
4,856,116 + PfGW456L13_4345 0.70 -0.0
4,856,133 + PfGW456L13_4345 0.71 -0.6
4,856,133 + +1.6
4,856,133 + PfGW456L13_4345 0.71 -0.1
4,856,133 + PfGW456L13_4345 0.71 -0.3
4,856,134 - PfGW456L13_4345 0.71 -0.8
4,856,134 - PfGW456L13_4345 0.71 +0.8
4,856,134 - PfGW456L13_4345 0.71 -0.6
4,856,134 - PfGW456L13_4345 0.71 +1.1
4,856,399 + -0.6
4,856,400 - +1.4
4,856,400 - -0.2
4,856,551 + -0.4
4,856,551 + -1.2
4,856,551 + +1.0
4,856,551 + -0.2
4,856,552 - -0.8
4,856,552 - +0.2
4,856,552 - +0.0
4,856,552 - +0.1
4,856,552 - -1.0
4,856,552 - +1.5
4,856,552 - -0.1
4,856,556 - +0.4
4,856,661 + PfGW456L13_4346 0.11 -2.5
4,856,789 - PfGW456L13_4346 0.47 -1.2
4,856,789 - PfGW456L13_4346 0.47 -1.8
4,856,789 - PfGW456L13_4346 0.47 -3.8
4,856,789 - PfGW456L13_4346 0.47 -2.2
4,856,789 - PfGW456L13_4346 0.47 -1.2
4,857,006 + -0.2
4,857,006 + -0.5
4,857,026 - +0.2
4,857,026 - -1.1
4,857,026 - +1.1
4,857,233 + PfGW456L13_4347 0.13 -0.3
4,857,233 + PfGW456L13_4347 0.13 +0.8
4,857,233 + PfGW456L13_4347 0.13 -2.4
4,857,233 + PfGW456L13_4347 0.13 +0.3
4,857,233 + PfGW456L13_4347 0.13 -0.5
4,857,233 + PfGW456L13_4347 0.13 -1.0
4,857,233 + PfGW456L13_4347 0.13 +1.6
4,857,233 + PfGW456L13_4347 0.13 +0.5
4,857,233 + PfGW456L13_4347 0.13 +1.9
4,857,233 + PfGW456L13_4347 0.13 -0.1
4,857,233 + PfGW456L13_4347 0.13 +0.8
4,857,233 + PfGW456L13_4347 0.13 -0.5
4,857,233 + PfGW456L13_4347 0.13 -0.4
4,857,233 + PfGW456L13_4347 0.13 +1.2
4,857,233 + PfGW456L13_4347 0.13 +0.8
4,857,234 - PfGW456L13_4347 0.13 -0.4
4,857,234 - PfGW456L13_4347 0.13 -0.2
4,857,234 - PfGW456L13_4347 0.13 +0.7
4,857,234 - PfGW456L13_4347 0.13 +0.8
4,857,234 - PfGW456L13_4347 0.13 -0.8
4,857,234 - PfGW456L13_4347 0.13 +0.2
4,857,234 - PfGW456L13_4347 0.13 -0.6
4,857,234 - PfGW456L13_4347 0.13 +2.3
4,857,234 - PfGW456L13_4347 0.13 -1.5
4,857,234 - PfGW456L13_4347 0.13 +0.2
4,857,234 - PfGW456L13_4347 0.13 +1.5
4,857,234 - PfGW456L13_4347 0.13 -0.0
4,857,234 - PfGW456L13_4347 0.13 +0.4
4,857,234 - PfGW456L13_4347 0.13 -1.8
4,857,234 - PfGW456L13_4347 0.13 -0.4
4,857,234 - PfGW456L13_4347 0.13 -0.1
4,857,234 - PfGW456L13_4347 0.13 +0.5
4,857,234 - PfGW456L13_4347 0.13 +1.2
4,857,234 - PfGW456L13_4347 0.13 -1.1
4,857,234 - PfGW456L13_4347 0.13 -1.6
4,857,234 - PfGW456L13_4347 0.13 -0.1
4,857,237 + PfGW456L13_4347 0.14 -1.4
4,857,237 + PfGW456L13_4347 0.14 +0.5
4,857,237 + PfGW456L13_4347 0.14 +1.2
4,857,237 + PfGW456L13_4347 0.14 +1.2
4,857,237 + PfGW456L13_4347 0.14 -1.0
4,857,238 - PfGW456L13_4347 0.14 +0.4
4,857,238 - PfGW456L13_4347 0.14 -0.4
4,857,238 - PfGW456L13_4347 0.14 +1.1
4,857,238 - PfGW456L13_4347 0.14 -0.6
4,857,238 - PfGW456L13_4347 0.14 -0.2
4,857,238 - PfGW456L13_4347 0.14 +1.1
4,857,238 - PfGW456L13_4347 0.14 -0.2
4,857,238 - PfGW456L13_4347 0.14 +0.1
4,857,238 - PfGW456L13_4347 0.14 +0.8
4,857,238 - PfGW456L13_4347 0.14 +0.6
4,857,238 - PfGW456L13_4347 0.14 -1.2
4,857,249 - PfGW456L13_4347 0.14 +0.9
4,857,249 - PfGW456L13_4347 0.14 -0.3
4,857,249 - PfGW456L13_4347 0.14 +1.4
4,857,279 + PfGW456L13_4347 0.16 -1.0
4,857,283 - PfGW456L13_4347 0.16 -1.2
4,857,357 + PfGW456L13_4347 0.21 +0.9
4,857,358 - PfGW456L13_4347 0.21 +0.3
4,857,358 - PfGW456L13_4347 0.21 +0.7
4,857,358 - PfGW456L13_4347 0.21 +1.3
4,857,378 + PfGW456L13_4347 0.22 -0.8
4,857,435 + PfGW456L13_4347 0.25 +0.8
4,857,435 + PfGW456L13_4347 0.25 -1.1
4,857,435 + PfGW456L13_4347 0.25 -0.2
4,857,435 + PfGW456L13_4347 0.25 -2.9
4,857,436 - PfGW456L13_4347 0.25 +0.0
4,857,436 - PfGW456L13_4347 0.25 +0.6
4,857,436 - PfGW456L13_4347 0.25 +0.7
4,857,486 - PfGW456L13_4347 0.28 -0.1
4,857,486 - PfGW456L13_4347 0.28 +0.4
4,857,526 - PfGW456L13_4347 0.31 -0.4
4,857,526 - PfGW456L13_4347 0.31 -1.1
4,857,526 - PfGW456L13_4347 0.31 +1.9
4,857,526 - PfGW456L13_4347 0.31 +0.8
4,857,580 + PfGW456L13_4347 0.34 +1.8
4,857,580 + PfGW456L13_4347 0.34 +0.2
4,857,581 - PfGW456L13_4347 0.34 +0.3
4,857,581 - PfGW456L13_4347 0.34 -1.7
4,857,581 - PfGW456L13_4347 0.34 -0.1
4,857,743 + PfGW456L13_4347 0.43 -0.2
4,857,744 - PfGW456L13_4347 0.43 -0.5
4,857,744 - PfGW456L13_4347 0.43 -0.1
4,857,784 + PfGW456L13_4347 0.46 -0.2

Or see this region's nucleotide sequence