Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_430

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_428 and PfGW456L13_429 overlap by 1 nucleotidesPfGW456L13_429 and PfGW456L13_430 are separated by 234 nucleotidesPfGW456L13_430 and PfGW456L13_431 are separated by 247 nucleotides PfGW456L13_428 - Transcription accessory protein (S1 RNA-binding domain), at 492,222 to 494,546 _428 PfGW456L13_429 - Uncharacterized protein, possibly involved in aromatic compounds catabolism, at 494,546 to 494,929 _429 PfGW456L13_430 - Glutamate--cysteine ligase (EC 6.3.2.2), at 495,164 to 496,747 _430 PfGW456L13_431 - Taurine-binding periplasmic protein TauA, at 496,995 to 497,972 _431 Position (kb) 495 496 497Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 494.176 kb on + strand, within PfGW456L13_428at 494.176 kb on + strand, within PfGW456L13_428at 494.176 kb on + strand, within PfGW456L13_428at 494.176 kb on + strand, within PfGW456L13_428at 494.176 kb on + strand, within PfGW456L13_428at 494.177 kb on - strand, within PfGW456L13_428at 494.177 kb on - strand, within PfGW456L13_428at 494.177 kb on - strand, within PfGW456L13_428at 494.177 kb on - strand, within PfGW456L13_428at 494.786 kb on + strand, within PfGW456L13_429at 494.786 kb on + strand, within PfGW456L13_429at 494.786 kb on + strand, within PfGW456L13_429at 494.786 kb on + strand, within PfGW456L13_429at 494.786 kb on + strand, within PfGW456L13_429at 494.786 kb on + strand, within PfGW456L13_429at 494.786 kb on + strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.787 kb on - strand, within PfGW456L13_429at 494.928 kb on - strandat 494.928 kb on - strandat 494.928 kb on - strandat 494.928 kb on - strandat 494.931 kb on + strandat 494.931 kb on + strandat 494.931 kb on + strandat 494.932 kb on - strandat 494.932 kb on - strandat 494.932 kb on - strandat 494.932 kb on - strandat 494.932 kb on - strandat 494.932 kb on - strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.965 kb on + strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.966 kb on - strandat 494.975 kb on - strandat 494.975 kb on - strandat 495.069 kb on - strandat 495.095 kb on + strandat 495.109 kb on + strandat 495.110 kb on - strandat 495.110 kb on - strandat 495.110 kb on - strandat 495.110 kb on - strandat 495.461 kb on + strand, within PfGW456L13_430at 495.461 kb on + strand, within PfGW456L13_430at 495.461 kb on + strand, within PfGW456L13_430at 495.462 kb on - strand, within PfGW456L13_430at 495.522 kb on - strand, within PfGW456L13_430at 495.554 kb on + strand, within PfGW456L13_430at 495.554 kb on + strand, within PfGW456L13_430at 495.554 kb on + strand, within PfGW456L13_430at 495.555 kb on - strand, within PfGW456L13_430at 495.555 kb on - strand, within PfGW456L13_430at 495.555 kb on - strand, within PfGW456L13_430at 495.555 kb on - strand, within PfGW456L13_430at 495.620 kb on + strand, within PfGW456L13_430at 495.620 kb on + strand, within PfGW456L13_430at 495.710 kb on + strand, within PfGW456L13_430at 495.710 kb on + strand, within PfGW456L13_430at 495.710 kb on + strand, within PfGW456L13_430at 495.710 kb on + strand, within PfGW456L13_430at 495.710 kb on + strand, within PfGW456L13_430at 495.710 kb on + strand, within PfGW456L13_430at 495.711 kb on - strand, within PfGW456L13_430at 495.711 kb on - strand, within PfGW456L13_430at 495.711 kb on - strand, within PfGW456L13_430at 495.713 kb on - strand, within PfGW456L13_430at 495.750 kb on + strand, within PfGW456L13_430at 495.758 kb on + strand, within PfGW456L13_430at 495.758 kb on + strand, within PfGW456L13_430at 495.758 kb on + strand, within PfGW456L13_430at 495.759 kb on - strand, within PfGW456L13_430at 495.759 kb on - strand, within PfGW456L13_430at 495.759 kb on - strand, within PfGW456L13_430at 495.845 kb on + strand, within PfGW456L13_430at 495.846 kb on - strand, within PfGW456L13_430at 495.846 kb on - strand, within PfGW456L13_430at 495.846 kb on - strand, within PfGW456L13_430at 495.923 kb on + strand, within PfGW456L13_430at 495.923 kb on + strand, within PfGW456L13_430at 495.923 kb on + strand, within PfGW456L13_430at 495.923 kb on + strand, within PfGW456L13_430at 495.941 kb on + strand, within PfGW456L13_430at 495.942 kb on - strand, within PfGW456L13_430at 495.942 kb on - strand, within PfGW456L13_430at 495.987 kb on - strand, within PfGW456L13_430at 496.061 kb on + strand, within PfGW456L13_430at 496.061 kb on + strand, within PfGW456L13_430at 496.062 kb on - strand, within PfGW456L13_430at 496.094 kb on + strand, within PfGW456L13_430at 496.095 kb on - strand, within PfGW456L13_430at 496.095 kb on - strand, within PfGW456L13_430at 496.095 kb on - strand, within PfGW456L13_430at 496.095 kb on - strand, within PfGW456L13_430at 496.095 kb on - strand, within PfGW456L13_430at 496.143 kb on - strand, within PfGW456L13_430at 496.153 kb on - strand, within PfGW456L13_430at 496.153 kb on - strand, within PfGW456L13_430at 496.153 kb on - strand, within PfGW456L13_430at 496.715 kb on + strandat 496.741 kb on + strandat 496.741 kb on + strandat 496.742 kb on - strandat 496.742 kb on - strandat 496.742 kb on - strandat 496.745 kb on + strandat 496.745 kb on + strandat 496.745 kb on + strandat 496.745 kb on + strandat 496.746 kb on - strandat 496.770 kb on + strandat 496.833 kb on + strandat 496.833 kb on + strandat 496.872 kb on - strandat 497.015 kb on - strandat 497.015 kb on - strandat 497.015 kb on - strandat 497.015 kb on - strandat 497.133 kb on + strand, within PfGW456L13_431at 497.157 kb on - strand, within PfGW456L13_431at 497.189 kb on + strand, within PfGW456L13_431at 497.394 kb on - strand, within PfGW456L13_431at 497.394 kb on - strand, within PfGW456L13_431at 497.394 kb on - strand, within PfGW456L13_431at 497.395 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.409 kb on + strand, within PfGW456L13_431at 497.410 kb on - strand, within PfGW456L13_431at 497.526 kb on + strand, within PfGW456L13_431at 497.527 kb on - strand, within PfGW456L13_431at 497.527 kb on - strand, within PfGW456L13_431at 497.527 kb on - strand, within PfGW456L13_431at 497.700 kb on + strand, within PfGW456L13_431

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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494,176 + PfGW456L13_428 0.84 -1.1
494,176 + PfGW456L13_428 0.84 -2.7
494,176 + PfGW456L13_428 0.84 -0.7
494,176 + PfGW456L13_428 0.84 +0.7
494,176 + PfGW456L13_428 0.84 -0.4
494,177 - PfGW456L13_428 0.84 -0.3
494,177 - PfGW456L13_428 0.84 -0.3
494,177 - PfGW456L13_428 0.84 -0.7
494,177 - PfGW456L13_428 0.84 +0.1
494,786 + PfGW456L13_429 0.62 +0.2
494,786 + PfGW456L13_429 0.62 -0.0
494,786 + PfGW456L13_429 0.62 +0.2
494,786 + PfGW456L13_429 0.62 +0.1
494,786 + PfGW456L13_429 0.62 -1.4
494,786 + PfGW456L13_429 0.62 +0.4
494,786 + PfGW456L13_429 0.62 -0.3
494,787 - PfGW456L13_429 0.63 +0.2
494,787 - PfGW456L13_429 0.63 +1.9
494,787 - PfGW456L13_429 0.63 -0.1
494,787 - PfGW456L13_429 0.63 -2.3
494,787 - PfGW456L13_429 0.63 -2.2
494,787 - PfGW456L13_429 0.63 -0.6
494,787 - PfGW456L13_429 0.63 -0.1
494,787 - PfGW456L13_429 0.63 -0.2
494,928 - -0.4
494,928 - +0.2
494,928 - +0.8
494,928 - -0.6
494,931 + -0.4
494,931 + +1.1
494,931 + +0.6
494,932 - +0.0
494,932 - +0.4
494,932 - +0.1
494,932 - +0.4
494,932 - -0.4
494,932 - +0.1
494,965 + -0.5
494,965 + +0.8
494,965 + +1.3
494,965 + -0.8
494,965 + -0.2
494,965 + -0.3
494,965 + -1.3
494,965 + +0.1
494,965 + +0.8
494,966 - -0.3
494,966 - -2.3
494,966 - +0.3
494,966 - -1.1
494,966 - +0.5
494,966 - +1.1
494,966 - +0.4
494,966 - -0.4
494,966 - -0.6
494,966 - +0.1
494,966 - -0.4
494,966 - +1.0
494,966 - +0.2
494,966 - +0.5
494,966 - -0.8
494,966 - -0.2
494,975 - +1.5
494,975 - +0.0
495,069 - +0.6
495,095 + -0.0
495,109 + -0.0
495,110 - +0.6
495,110 - -0.0
495,110 - +0.2
495,110 - +1.1
495,461 + PfGW456L13_430 0.19 -0.7
495,461 + PfGW456L13_430 0.19 -1.0
495,461 + PfGW456L13_430 0.19 +0.1
495,462 - PfGW456L13_430 0.19 -0.9
495,522 - PfGW456L13_430 0.23 -1.4
495,554 + PfGW456L13_430 0.25 -2.2
495,554 + PfGW456L13_430 0.25 -0.4
495,554 + PfGW456L13_430 0.25 -1.2
495,555 - PfGW456L13_430 0.25 -0.9
495,555 - PfGW456L13_430 0.25 -2.2
495,555 - PfGW456L13_430 0.25 -0.9
495,555 - PfGW456L13_430 0.25 -2.8
495,620 + PfGW456L13_430 0.29 -1.4
495,620 + PfGW456L13_430 0.29 -1.9
495,710 + PfGW456L13_430 0.34 -2.0
495,710 + PfGW456L13_430 0.34 -2.6
495,710 + PfGW456L13_430 0.34 -1.8
495,710 + PfGW456L13_430 0.34 -1.4
495,710 + PfGW456L13_430 0.34 -2.0
495,710 + PfGW456L13_430 0.34 -2.8
495,711 - PfGW456L13_430 0.35 -0.1
495,711 - PfGW456L13_430 0.35 +0.6
495,711 - PfGW456L13_430 0.35 -2.2
495,713 - PfGW456L13_430 0.35 -1.2
495,750 + PfGW456L13_430 0.37 -1.3
495,758 + PfGW456L13_430 0.38 -0.7
495,758 + PfGW456L13_430 0.38 -2.9
495,758 + PfGW456L13_430 0.38 -1.2
495,759 - PfGW456L13_430 0.38 -1.9
495,759 - PfGW456L13_430 0.38 -2.0
495,759 - PfGW456L13_430 0.38 -1.4
495,845 + PfGW456L13_430 0.43 -1.7
495,846 - PfGW456L13_430 0.43 -0.0
495,846 - PfGW456L13_430 0.43 -1.3
495,846 - PfGW456L13_430 0.43 -0.2
495,923 + PfGW456L13_430 0.48 -1.4
495,923 + PfGW456L13_430 0.48 -2.6
495,923 + PfGW456L13_430 0.48 -2.2
495,923 + PfGW456L13_430 0.48 -1.2
495,941 + PfGW456L13_430 0.49 -3.1
495,942 - PfGW456L13_430 0.49 +1.1
495,942 - PfGW456L13_430 0.49 -1.4
495,987 - PfGW456L13_430 0.52 -2.0
496,061 + PfGW456L13_430 0.57 -1.4
496,061 + PfGW456L13_430 0.57 -2.0
496,062 - PfGW456L13_430 0.57 -1.9
496,094 + PfGW456L13_430 0.59 -1.9
496,095 - PfGW456L13_430 0.59 -2.4
496,095 - PfGW456L13_430 0.59 -1.2
496,095 - PfGW456L13_430 0.59 -0.7
496,095 - PfGW456L13_430 0.59 -1.1
496,095 - PfGW456L13_430 0.59 -2.3
496,143 - PfGW456L13_430 0.62 -0.6
496,153 - PfGW456L13_430 0.62 -2.0
496,153 - PfGW456L13_430 0.62 -2.3
496,153 - PfGW456L13_430 0.62 -2.7
496,715 + +1.3
496,741 + -1.4
496,741 + +0.1
496,742 - -0.7
496,742 - -0.1
496,742 - +0.8
496,745 + -0.9
496,745 + -0.1
496,745 + -2.0
496,745 + -0.2
496,746 - -0.1
496,770 + +0.7
496,833 + +2.6
496,833 + -0.0
496,872 - -0.6
497,015 - +0.3
497,015 - -0.9
497,015 - -0.1
497,015 - -0.6
497,133 + PfGW456L13_431 0.14 +0.1
497,157 - PfGW456L13_431 0.17 -0.0
497,189 + PfGW456L13_431 0.20 -0.2
497,394 - PfGW456L13_431 0.41 +0.8
497,394 - PfGW456L13_431 0.41 -1.2
497,394 - PfGW456L13_431 0.41 +0.3
497,395 + PfGW456L13_431 0.41 +0.2
497,409 + PfGW456L13_431 0.42 +0.4
497,409 + PfGW456L13_431 0.42 -0.1
497,409 + PfGW456L13_431 0.42 +0.6
497,409 + PfGW456L13_431 0.42 -0.5
497,410 - PfGW456L13_431 0.42 -0.2
497,526 + PfGW456L13_431 0.54 +0.3
497,527 - PfGW456L13_431 0.54 +0.5
497,527 - PfGW456L13_431 0.54 -0.6
497,527 - PfGW456L13_431 0.54 +0.1
497,700 + PfGW456L13_431 0.72 -0.9

Or see this region's nucleotide sequence