Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_4011 and PfGW456L13_4012 are separated by 389 nucleotides PfGW456L13_4012 and PfGW456L13_4013 are separated by 202 nucleotides PfGW456L13_4013 and PfGW456L13_4014 are separated by 112 nucleotides
PfGW456L13_4011 - Serine phosphatase RsbU, regulator of sigma subunit, at 4,500,449 to 4,501,630
_4011
PfGW456L13_4012 - VacJ-like lipoprotein precursor, at 4,502,020 to 4,502,709
_4012
PfGW456L13_4013 - Phosphonoacetaldehyde phosphonohydrolase-related protein, at 4,502,912 to 4,503,532
_4013
PfGW456L13_4014 - Chromosome segregation ATPases, at 4,503,645 to 4,503,908
_4014
Position (kb)
4502
4503 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4501.653 kb on - strand at 4501.653 kb on - strand at 4501.653 kb on - strand at 4501.653 kb on - strand at 4501.653 kb on - strand at 4501.710 kb on - strand at 4501.710 kb on - strand at 4501.721 kb on - strand at 4501.721 kb on - strand at 4501.775 kb on - strand at 4501.775 kb on - strand at 4501.775 kb on - strand at 4501.841 kb on + strand at 4501.841 kb on + strand at 4501.841 kb on + strand at 4501.842 kb on - strand at 4501.842 kb on - strand at 4501.842 kb on - strand at 4501.842 kb on - strand at 4501.866 kb on - strand at 4501.866 kb on - strand at 4501.929 kb on - strand at 4502.075 kb on + strand at 4502.075 kb on + strand at 4502.076 kb on - strand at 4502.076 kb on - strand at 4502.076 kb on - strand at 4502.097 kb on - strand, within PfGW456L13_4012 at 4502.194 kb on + strand, within PfGW456L13_4012 at 4502.199 kb on - strand, within PfGW456L13_4012 at 4502.733 kb on - strand at 4502.760 kb on + strand at 4502.761 kb on - strand at 4502.761 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.773 kb on - strand at 4502.774 kb on + strand at 4502.774 kb on + strand at 4502.775 kb on - strand at 4502.775 kb on - strand at 4502.775 kb on - strand at 4502.781 kb on + strand at 4502.781 kb on + strand at 4502.781 kb on + strand at 4502.782 kb on - strand at 4502.782 kb on - strand at 4502.782 kb on - strand at 4502.782 kb on - strand at 4502.805 kb on - strand at 4502.805 kb on - strand at 4502.883 kb on - strand at 4502.895 kb on - strand at 4503.187 kb on + strand, within PfGW456L13_4013 at 4503.188 kb on - strand, within PfGW456L13_4013 at 4503.267 kb on + strand, within PfGW456L13_4013 at 4503.268 kb on - strand, within PfGW456L13_4013 at 4503.564 kb on + strand at 4503.564 kb on + strand at 4503.569 kb on + strand at 4503.569 kb on + strand at 4503.569 kb on + strand at 4503.569 kb on + strand at 4503.569 kb on + strand at 4503.569 kb on + strand at 4503.570 kb on - strand at 4503.570 kb on - strand at 4503.608 kb on + strand at 4503.608 kb on + strand at 4503.608 kb on + strand at 4503.609 kb on - strand at 4503.609 kb on - strand at 4503.609 kb on - strand at 4503.609 kb on - strand at 4503.609 kb on - strand at 4503.609 kb on - strand at 4503.609 kb on - strand at 4503.626 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 4,501,653 - +0.3 4,501,653 - +0.8 4,501,653 - +0.9 4,501,653 - -0.2 4,501,653 - +0.0 4,501,710 - +1.6 4,501,710 - +0.2 4,501,721 - +0.2 4,501,721 - +0.2 4,501,775 - +0.2 4,501,775 - +0.6 4,501,775 - +1.4 4,501,841 + -0.5 4,501,841 + +1.5 4,501,841 + +1.0 4,501,842 - +1.1 4,501,842 - +0.1 4,501,842 - +1.8 4,501,842 - +0.5 4,501,866 - +0.2 4,501,866 - +0.5 4,501,929 - +0.8 4,502,075 + -0.3 4,502,075 + -1.2 4,502,076 - -1.0 4,502,076 - +0.5 4,502,076 - -1.8 4,502,097 - PfGW456L13_4012 0.11 -0.8 4,502,194 + PfGW456L13_4012 0.25 +0.2 4,502,199 - PfGW456L13_4012 0.26 -0.8 4,502,733 - +0.3 4,502,760 + +0.8 4,502,761 - -1.0 4,502,761 - -0.2 4,502,773 - -0.7 4,502,773 - +0.3 4,502,773 - -0.6 4,502,773 - +0.3 4,502,773 - -0.4 4,502,773 - -0.0 4,502,773 - -0.7 4,502,773 - -0.8 4,502,774 + +0.3 4,502,774 + +3.0 4,502,775 - +0.2 4,502,775 - -0.2 4,502,775 - +0.0 4,502,781 + +0.8 4,502,781 + -0.4 4,502,781 + -0.5 4,502,782 - -0.4 4,502,782 - -1.8 4,502,782 - -1.8 4,502,782 - -0.7 4,502,805 - -2.0 4,502,805 - -1.3 4,502,883 - -0.2 4,502,895 - +0.1 4,503,187 + PfGW456L13_4013 0.44 +0.1 4,503,188 - PfGW456L13_4013 0.44 -0.8 4,503,267 + PfGW456L13_4013 0.57 +0.1 4,503,268 - PfGW456L13_4013 0.57 -0.2 4,503,564 + -0.1 4,503,564 + +0.1 4,503,569 + +1.4 4,503,569 + +0.8 4,503,569 + +0.2 4,503,569 + +1.3 4,503,569 + +0.4 4,503,569 + +0.8 4,503,570 - -0.7 4,503,570 - -0.0 4,503,608 + +0.4 4,503,608 + +0.7 4,503,608 + +0.1 4,503,609 - -0.3 4,503,609 - +0.4 4,503,609 - +0.7 4,503,609 - +0.3 4,503,609 - +1.2 4,503,609 - +0.6 4,503,609 - -1.0 4,503,626 + +1.0
Or see this region's nucleotide sequence