Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_3973

Experiment: Vancomycin 0.5 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_3972 and PfGW456L13_3973 are separated by 126 nucleotidesPfGW456L13_3973 and PfGW456L13_3974 are separated by 107 nucleotides PfGW456L13_3972 - hypothetical protein, at 4,455,597 to 4,457,306 _3972 PfGW456L13_3973 - hypothetical protein, at 4,457,433 to 4,458,134 _3973 PfGW456L13_3974 - Multicopper oxidase, at 4,458,242 to 4,459,948 _3974 Position (kb) 4457 4458 4459Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4456.480 kb on + strand, within PfGW456L13_3972at 4456.481 kb on - strand, within PfGW456L13_3972at 4456.495 kb on + strand, within PfGW456L13_3972at 4456.495 kb on + strand, within PfGW456L13_3972at 4456.561 kb on + strand, within PfGW456L13_3972at 4456.708 kb on + strand, within PfGW456L13_3972at 4456.709 kb on - strand, within PfGW456L13_3972at 4457.037 kb on + strand, within PfGW456L13_3972at 4457.037 kb on + strand, within PfGW456L13_3972at 4457.078 kb on - strand, within PfGW456L13_3972at 4457.078 kb on - strand, within PfGW456L13_3972at 4457.090 kb on + strand, within PfGW456L13_3972at 4457.090 kb on + strand, within PfGW456L13_3972at 4457.090 kb on + strand, within PfGW456L13_3972at 4457.090 kb on + strand, within PfGW456L13_3972at 4457.091 kb on - strand, within PfGW456L13_3972at 4457.092 kb on + strand, within PfGW456L13_3972at 4457.092 kb on + strand, within PfGW456L13_3972at 4457.092 kb on + strand, within PfGW456L13_3972at 4457.092 kb on + strand, within PfGW456L13_3972at 4457.092 kb on + strand, within PfGW456L13_3972at 4457.093 kb on - strand, within PfGW456L13_3972at 4457.093 kb on - strand, within PfGW456L13_3972at 4457.093 kb on - strand, within PfGW456L13_3972at 4457.093 kb on - strand, within PfGW456L13_3972at 4457.093 kb on - strand, within PfGW456L13_3972at 4457.251 kb on - strandat 4457.341 kb on - strandat 4457.341 kb on - strandat 4457.356 kb on - strandat 4457.356 kb on - strandat 4457.383 kb on + strandat 4457.384 kb on - strandat 4457.402 kb on - strandat 4457.433 kb on - strandat 4457.433 kb on - strandat 4457.441 kb on - strandat 4457.458 kb on + strandat 4457.458 kb on + strandat 4457.458 kb on + strandat 4457.459 kb on - strandat 4457.459 kb on - strandat 4457.471 kb on - strandat 4457.488 kb on + strandat 4457.499 kb on + strandat 4457.637 kb on + strand, within PfGW456L13_3973at 4457.637 kb on + strand, within PfGW456L13_3973at 4457.682 kb on - strand, within PfGW456L13_3973at 4457.814 kb on + strand, within PfGW456L13_3973at 4457.815 kb on - strand, within PfGW456L13_3973at 4457.913 kb on + strand, within PfGW456L13_3973at 4457.914 kb on - strand, within PfGW456L13_3973at 4458.039 kb on + strand, within PfGW456L13_3973at 4458.040 kb on - strand, within PfGW456L13_3973at 4458.042 kb on + strand, within PfGW456L13_3973at 4458.075 kb on + strandat 4458.159 kb on + strandat 4458.159 kb on + strandat 4458.159 kb on + strandat 4458.160 kb on - strandat 4458.160 kb on - strandat 4458.316 kb on - strandat 4458.620 kb on + strand, within PfGW456L13_3974at 4458.620 kb on + strand, within PfGW456L13_3974at 4458.620 kb on + strand, within PfGW456L13_3974at 4458.620 kb on + strand, within PfGW456L13_3974at 4458.620 kb on + strand, within PfGW456L13_3974at 4458.620 kb on + strand, within PfGW456L13_3974at 4458.621 kb on - strand, within PfGW456L13_3974at 4458.621 kb on - strand, within PfGW456L13_3974at 4458.627 kb on - strand, within PfGW456L13_3974at 4458.656 kb on + strand, within PfGW456L13_3974at 4458.656 kb on + strand, within PfGW456L13_3974at 4458.657 kb on - strand, within PfGW456L13_3974at 4458.657 kb on - strand, within PfGW456L13_3974at 4458.657 kb on - strand, within PfGW456L13_3974at 4458.701 kb on + strand, within PfGW456L13_3974at 4458.702 kb on - strand, within PfGW456L13_3974at 4458.758 kb on + strand, within PfGW456L13_3974at 4458.834 kb on - strand, within PfGW456L13_3974at 4458.834 kb on - strand, within PfGW456L13_3974at 4458.836 kb on + strand, within PfGW456L13_3974at 4458.836 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strand, within PfGW456L13_3974at 4458.977 kb on + strandat 4458.978 kb on - strand, within PfGW456L13_3974at 4458.978 kb on - strand, within PfGW456L13_3974at 4458.978 kb on - strand, within PfGW456L13_3974at 4458.978 kb on - strand, within PfGW456L13_3974at 4458.978 kb on - strand, within PfGW456L13_3974at 4458.978 kb on - strand, within PfGW456L13_3974at 4458.978 kb on - strand, within PfGW456L13_3974at 4458.983 kb on + strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4458.984 kb on - strand, within PfGW456L13_3974at 4459.082 kb on + strand, within PfGW456L13_3974at 4459.083 kb on - strand, within PfGW456L13_3974

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Per-strain Table

Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml
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4,456,480 + PfGW456L13_3972 0.52 -0.4
4,456,481 - PfGW456L13_3972 0.52 -0.2
4,456,495 + PfGW456L13_3972 0.53 -0.1
4,456,495 + PfGW456L13_3972 0.53 +0.3
4,456,561 + PfGW456L13_3972 0.56 -0.2
4,456,708 + PfGW456L13_3972 0.65 -0.0
4,456,709 - PfGW456L13_3972 0.65 -0.6
4,457,037 + PfGW456L13_3972 0.84 +0.4
4,457,037 + PfGW456L13_3972 0.84 +0.2
4,457,078 - PfGW456L13_3972 0.87 +1.0
4,457,078 - PfGW456L13_3972 0.87 +0.2
4,457,090 + PfGW456L13_3972 0.87 -0.8
4,457,090 + PfGW456L13_3972 0.87 +0.6
4,457,090 + PfGW456L13_3972 0.87 +0.8
4,457,090 + PfGW456L13_3972 0.87 +0.7
4,457,091 - PfGW456L13_3972 0.87 -0.4
4,457,092 + PfGW456L13_3972 0.87 +1.6
4,457,092 + PfGW456L13_3972 0.87 +1.9
4,457,092 + PfGW456L13_3972 0.87 +0.1
4,457,092 + PfGW456L13_3972 0.87 +0.8
4,457,092 + PfGW456L13_3972 0.87 -0.0
4,457,093 - PfGW456L13_3972 0.87 -0.6
4,457,093 - PfGW456L13_3972 0.87 +0.1
4,457,093 - PfGW456L13_3972 0.87 -0.1
4,457,093 - PfGW456L13_3972 0.87 +0.4
4,457,093 - PfGW456L13_3972 0.87 -0.2
4,457,251 - -0.9
4,457,341 - +0.6
4,457,341 - -0.2
4,457,356 - -0.2
4,457,356 - +1.4
4,457,383 + -1.7
4,457,384 - -0.6
4,457,402 - -0.0
4,457,433 - -1.0
4,457,433 - +0.2
4,457,441 - -1.2
4,457,458 + +0.5
4,457,458 + -0.6
4,457,458 + -1.2
4,457,459 - -1.2
4,457,459 - -0.8
4,457,471 - -1.1
4,457,488 + -1.2
4,457,499 + -0.5
4,457,637 + PfGW456L13_3973 0.29 -1.0
4,457,637 + PfGW456L13_3973 0.29 +0.1
4,457,682 - PfGW456L13_3973 0.35 -2.3
4,457,814 + PfGW456L13_3973 0.54 -0.1
4,457,815 - PfGW456L13_3973 0.54 -0.2
4,457,913 + PfGW456L13_3973 0.68 -1.5
4,457,914 - PfGW456L13_3973 0.69 -0.8
4,458,039 + PfGW456L13_3973 0.86 -0.9
4,458,040 - PfGW456L13_3973 0.86 -1.6
4,458,042 + PfGW456L13_3973 0.87 -0.9
4,458,075 + -0.2
4,458,159 + -1.1
4,458,159 + +0.6
4,458,159 + +0.2
4,458,160 - +1.2
4,458,160 - +0.2
4,458,316 - +0.5
4,458,620 + PfGW456L13_3974 0.22 -2.4
4,458,620 + PfGW456L13_3974 0.22 +0.5
4,458,620 + PfGW456L13_3974 0.22 -0.0
4,458,620 + PfGW456L13_3974 0.22 +0.8
4,458,620 + PfGW456L13_3974 0.22 -1.4
4,458,620 + PfGW456L13_3974 0.22 -1.4
4,458,621 - PfGW456L13_3974 0.22 -0.7
4,458,621 - PfGW456L13_3974 0.22 -1.6
4,458,627 - PfGW456L13_3974 0.23 +2.3
4,458,656 + PfGW456L13_3974 0.24 +0.4
4,458,656 + PfGW456L13_3974 0.24 +0.1
4,458,657 - PfGW456L13_3974 0.24 -0.8
4,458,657 - PfGW456L13_3974 0.24 +0.3
4,458,657 - PfGW456L13_3974 0.24 +0.5
4,458,701 + PfGW456L13_3974 0.27 -0.8
4,458,702 - PfGW456L13_3974 0.27 +0.2
4,458,758 + PfGW456L13_3974 0.30 -0.8
4,458,834 - PfGW456L13_3974 0.35 -2.8
4,458,834 - PfGW456L13_3974 0.35 +0.8
4,458,836 + PfGW456L13_3974 0.35 -0.1
4,458,836 + PfGW456L13_3974 0.35 -0.5
4,458,977 + PfGW456L13_3974 0.43 -0.3
4,458,977 + PfGW456L13_3974 0.43 +0.8
4,458,977 + PfGW456L13_3974 0.43 +0.9
4,458,977 + PfGW456L13_3974 0.43 +0.4
4,458,977 + PfGW456L13_3974 0.43 +0.3
4,458,977 + PfGW456L13_3974 0.43 +1.1
4,458,977 + PfGW456L13_3974 0.43 +1.0
4,458,977 + PfGW456L13_3974 0.43 +0.9
4,458,977 + PfGW456L13_3974 0.43 -0.9
4,458,977 + -0.8
4,458,978 - PfGW456L13_3974 0.43 +1.8
4,458,978 - PfGW456L13_3974 0.43 -2.2
4,458,978 - PfGW456L13_3974 0.43 +0.3
4,458,978 - PfGW456L13_3974 0.43 -1.0
4,458,978 - PfGW456L13_3974 0.43 -0.1
4,458,978 - PfGW456L13_3974 0.43 -0.3
4,458,978 - PfGW456L13_3974 0.43 +0.6
4,458,983 + PfGW456L13_3974 0.43 -1.1
4,458,984 - PfGW456L13_3974 0.43 +0.3
4,458,984 - PfGW456L13_3974 0.43 +1.1
4,458,984 - PfGW456L13_3974 0.43 -0.1
4,458,984 - PfGW456L13_3974 0.43 +0.2
4,458,984 - PfGW456L13_3974 0.43 +0.2
4,458,984 - PfGW456L13_3974 0.43 -0.2
4,458,984 - PfGW456L13_3974 0.43 +1.4
4,458,984 - PfGW456L13_3974 0.43 -0.2
4,459,082 + PfGW456L13_3974 0.49 +0.6
4,459,083 - PfGW456L13_3974 0.49 -0.5

Or see this region's nucleotide sequence