Experiment: Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_3712 and PfGW456L13_3713 are separated by 83 nucleotides PfGW456L13_3713 and PfGW456L13_3714 are separated by 92 nucleotides PfGW456L13_3714 and PfGW456L13_3715 are separated by 102 nucleotides
PfGW456L13_3712 - hypothetical protein, at 4,176,971 to 4,177,186
_3712
PfGW456L13_3713 - hypothetical protein, at 4,177,270 to 4,178,073
_3713
PfGW456L13_3714 - FIG00957882: hypothetical protein, at 4,178,166 to 4,178,915
_3714
PfGW456L13_3715 - FIG00960858: hypothetical protein, at 4,179,018 to 4,180,667
_3715
Position (kb) 4177
4178
4179 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4176.343 kb on - strand at 4176.427 kb on + strand at 4176.428 kb on - strand at 4176.462 kb on + strand at 4176.474 kb on + strand at 4176.474 kb on + strand at 4176.475 kb on - strand at 4176.475 kb on - strand at 4176.556 kb on - strand at 4176.617 kb on - strand at 4176.733 kb on + strand at 4176.906 kb on - strand at 4177.025 kb on + strand, within PfGW456L13_3712 at 4177.025 kb on + strand, within PfGW456L13_3712 at 4177.041 kb on + strand, within PfGW456L13_3712 at 4177.042 kb on - strand at 4177.064 kb on + strand, within PfGW456L13_3712 at 4177.140 kb on - strand, within PfGW456L13_3712 at 4177.248 kb on - strand at 4177.248 kb on - strand at 4177.250 kb on - strand at 4177.296 kb on + strand at 4177.296 kb on + strand at 4177.296 kb on + strand at 4177.296 kb on + strand at 4177.297 kb on - strand at 4177.297 kb on - strand at 4177.297 kb on - strand at 4177.297 kb on - strand at 4177.365 kb on + strand, within PfGW456L13_3713 at 4177.366 kb on - strand, within PfGW456L13_3713 at 4177.369 kb on + strand, within PfGW456L13_3713 at 4177.369 kb on + strand, within PfGW456L13_3713 at 4177.369 kb on + strand, within PfGW456L13_3713 at 4177.369 kb on + strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.370 kb on - strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.397 kb on + strand, within PfGW456L13_3713 at 4177.398 kb on - strand, within PfGW456L13_3713 at 4177.398 kb on - strand, within PfGW456L13_3713 at 4177.398 kb on - strand, within PfGW456L13_3713 at 4177.398 kb on - strand, within PfGW456L13_3713 at 4177.398 kb on - strand, within PfGW456L13_3713 at 4177.398 kb on - strand at 4177.484 kb on - strand, within PfGW456L13_3713 at 4177.497 kb on + strand, within PfGW456L13_3713 at 4177.544 kb on - strand, within PfGW456L13_3713 at 4177.569 kb on + strand, within PfGW456L13_3713 at 4177.751 kb on - strand, within PfGW456L13_3713 at 4177.945 kb on + strand, within PfGW456L13_3713 at 4177.946 kb on - strand, within PfGW456L13_3713 at 4177.948 kb on + strand, within PfGW456L13_3713 at 4177.948 kb on + strand, within PfGW456L13_3713 at 4177.948 kb on + strand, within PfGW456L13_3713 at 4177.949 kb on - strand, within PfGW456L13_3713 at 4177.949 kb on - strand, within PfGW456L13_3713 at 4177.949 kb on - strand, within PfGW456L13_3713 at 4177.951 kb on + strand, within PfGW456L13_3713 at 4177.951 kb on + strand, within PfGW456L13_3713 at 4177.951 kb on + strand, within PfGW456L13_3713 at 4177.952 kb on - strand, within PfGW456L13_3713 at 4178.002 kb on + strand at 4178.002 kb on + strand at 4178.003 kb on - strand at 4178.038 kb on + strand at 4178.038 kb on + strand at 4178.039 kb on - strand at 4178.039 kb on - strand at 4178.039 kb on - strand at 4178.039 kb on - strand at 4178.041 kb on + strand at 4178.041 kb on + strand at 4178.041 kb on + strand at 4178.041 kb on + strand at 4178.042 kb on - strand at 4178.042 kb on - strand at 4178.050 kb on - strand at 4178.142 kb on + strand at 4178.143 kb on - strand at 4178.236 kb on + strand at 4178.236 kb on + strand at 4178.236 kb on + strand at 4178.236 kb on + strand at 4178.236 kb on + strand at 4178.236 kb on + strand at 4178.237 kb on - strand at 4178.237 kb on - strand at 4178.237 kb on - strand at 4178.238 kb on + strand at 4178.239 kb on - strand at 4178.239 kb on - strand at 4178.239 kb on - strand at 4178.611 kb on + strand, within PfGW456L13_3714 at 4178.611 kb on + strand, within PfGW456L13_3714 at 4178.611 kb on + strand, within PfGW456L13_3714 at 4178.611 kb on + strand, within PfGW456L13_3714 at 4178.611 kb on + strand, within PfGW456L13_3714 at 4178.612 kb on - strand, within PfGW456L13_3714 at 4178.612 kb on - strand, within PfGW456L13_3714 at 4178.734 kb on + strand, within PfGW456L13_3714 at 4178.734 kb on + strand, within PfGW456L13_3714 at 4178.734 kb on + strand, within PfGW456L13_3714 at 4178.734 kb on + strand, within PfGW456L13_3714 at 4178.734 kb on + strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.735 kb on - strand, within PfGW456L13_3714 at 4178.776 kb on + strand, within PfGW456L13_3714 at 4178.776 kb on + strand, within PfGW456L13_3714 at 4178.776 kb on + strand, within PfGW456L13_3714 at 4178.776 kb on + strand, within PfGW456L13_3714 at 4178.776 kb on + strand, within PfGW456L13_3714 at 4178.776 kb on + strand, within PfGW456L13_3714 at 4178.777 kb on - strand, within PfGW456L13_3714 at 4178.777 kb on - strand, within PfGW456L13_3714 at 4178.777 kb on - strand, within PfGW456L13_3714 at 4178.806 kb on + strand, within PfGW456L13_3714 at 4178.807 kb on - strand, within PfGW456L13_3714 at 4178.821 kb on + strand, within PfGW456L13_3714 at 4178.822 kb on - strand, within PfGW456L13_3714 at 4178.972 kb on - strand at 4178.972 kb on - strand at 4178.972 kb on - strand at 4178.980 kb on + strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.981 kb on - strand at 4178.984 kb on + strand at 4178.985 kb on - strand at 4178.985 kb on - strand at 4178.985 kb on - strand at 4178.985 kb on - strand at 4178.988 kb on + strand at 4178.988 kb on + strand at 4178.988 kb on + strand at 4178.988 kb on + strand at 4178.989 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.5 mg/ml remove 4,176,343 - +1.6 4,176,427 + +2.3 4,176,428 - +0.1 4,176,462 + +1.1 4,176,474 + -0.9 4,176,474 + +1.0 4,176,475 - +2.2 4,176,475 - +1.8 4,176,556 - +2.3 4,176,617 - +1.4 4,176,733 + +1.6 4,176,906 - +0.9 4,177,025 + PfGW456L13_3712 0.25 +1.7 4,177,025 + PfGW456L13_3712 0.25 +1.6 4,177,041 + PfGW456L13_3712 0.32 +1.6 4,177,042 - -0.3 4,177,064 + PfGW456L13_3712 0.43 +2.3 4,177,140 - PfGW456L13_3712 0.78 +0.9 4,177,248 - +0.2 4,177,248 - -0.2 4,177,250 - -0.3 4,177,296 + -0.7 4,177,296 + +0.5 4,177,296 + +1.9 4,177,296 + -1.0 4,177,297 - +0.4 4,177,297 - +1.4 4,177,297 - +1.0 4,177,297 - -1.3 4,177,365 + PfGW456L13_3713 0.12 +0.3 4,177,366 - PfGW456L13_3713 0.12 +1.4 4,177,369 + PfGW456L13_3713 0.12 +0.3 4,177,369 + PfGW456L13_3713 0.12 +0.8 4,177,369 + PfGW456L13_3713 0.12 -0.6 4,177,369 + PfGW456L13_3713 0.12 -0.1 4,177,370 - PfGW456L13_3713 0.12 +1.1 4,177,370 - PfGW456L13_3713 0.12 +1.3 4,177,370 - PfGW456L13_3713 0.12 +3.6 4,177,370 - PfGW456L13_3713 0.12 +2.6 4,177,370 - PfGW456L13_3713 0.12 +1.5 4,177,370 - PfGW456L13_3713 0.12 +1.5 4,177,370 - PfGW456L13_3713 0.12 +1.0 4,177,397 + PfGW456L13_3713 0.16 +1.4 4,177,397 + PfGW456L13_3713 0.16 -0.9 4,177,397 + PfGW456L13_3713 0.16 -0.3 4,177,397 + PfGW456L13_3713 0.16 -0.2 4,177,397 + PfGW456L13_3713 0.16 +0.6 4,177,397 + PfGW456L13_3713 0.16 -0.0 4,177,397 + PfGW456L13_3713 0.16 -0.4 4,177,398 - PfGW456L13_3713 0.16 +0.0 4,177,398 - PfGW456L13_3713 0.16 -0.3 4,177,398 - PfGW456L13_3713 0.16 +0.1 4,177,398 - PfGW456L13_3713 0.16 +1.0 4,177,398 - PfGW456L13_3713 0.16 +1.7 4,177,398 - +2.3 4,177,484 - PfGW456L13_3713 0.27 +0.3 4,177,497 + PfGW456L13_3713 0.28 -0.6 4,177,544 - PfGW456L13_3713 0.34 +0.8 4,177,569 + PfGW456L13_3713 0.37 +0.2 4,177,751 - PfGW456L13_3713 0.60 -0.6 4,177,945 + PfGW456L13_3713 0.84 -0.7 4,177,946 - PfGW456L13_3713 0.84 +1.4 4,177,948 + PfGW456L13_3713 0.84 -0.5 4,177,948 + PfGW456L13_3713 0.84 -1.0 4,177,948 + PfGW456L13_3713 0.84 -0.4 4,177,949 - PfGW456L13_3713 0.84 +1.4 4,177,949 - PfGW456L13_3713 0.84 +0.1 4,177,949 - PfGW456L13_3713 0.84 +0.6 4,177,951 + PfGW456L13_3713 0.85 -0.6 4,177,951 + PfGW456L13_3713 0.85 +1.0 4,177,951 + PfGW456L13_3713 0.85 +0.0 4,177,952 - PfGW456L13_3713 0.85 +0.5 4,178,002 + -1.0 4,178,002 + +0.6 4,178,003 - -1.0 4,178,038 + -0.1 4,178,038 + +0.2 4,178,039 - -0.5 4,178,039 - -2.3 4,178,039 - +1.2 4,178,039 - +1.6 4,178,041 + +0.2 4,178,041 + -0.9 4,178,041 + -2.9 4,178,041 + +1.2 4,178,042 - -0.5 4,178,042 - +0.0 4,178,050 - +0.1 4,178,142 + +1.3 4,178,143 - +0.8 4,178,236 + +0.1 4,178,236 + +0.3 4,178,236 + -0.0 4,178,236 + -0.9 4,178,236 + +0.6 4,178,236 + +0.9 4,178,237 - -0.9 4,178,237 - +0.3 4,178,237 - -0.6 4,178,238 + -0.7 4,178,239 - +0.7 4,178,239 - -0.3 4,178,239 - +0.8 4,178,611 + PfGW456L13_3714 0.59 -0.5 4,178,611 + PfGW456L13_3714 0.59 -1.6 4,178,611 + PfGW456L13_3714 0.59 +1.0 4,178,611 + PfGW456L13_3714 0.59 +0.2 4,178,611 + PfGW456L13_3714 0.59 +0.7 4,178,612 - PfGW456L13_3714 0.59 +1.9 4,178,612 - PfGW456L13_3714 0.59 -1.6 4,178,734 + PfGW456L13_3714 0.76 -0.1 4,178,734 + PfGW456L13_3714 0.76 +0.7 4,178,734 + PfGW456L13_3714 0.76 -0.9 4,178,734 + PfGW456L13_3714 0.76 +0.5 4,178,734 + PfGW456L13_3714 0.76 +0.2 4,178,735 - PfGW456L13_3714 0.76 -0.2 4,178,735 - PfGW456L13_3714 0.76 +0.1 4,178,735 - PfGW456L13_3714 0.76 -0.0 4,178,735 - PfGW456L13_3714 0.76 -0.3 4,178,735 - PfGW456L13_3714 0.76 +0.2 4,178,735 - PfGW456L13_3714 0.76 +0.5 4,178,735 - PfGW456L13_3714 0.76 +0.6 4,178,735 - PfGW456L13_3714 0.76 +0.5 4,178,776 + PfGW456L13_3714 0.81 +1.5 4,178,776 + PfGW456L13_3714 0.81 -0.6 4,178,776 + PfGW456L13_3714 0.81 -1.2 4,178,776 + PfGW456L13_3714 0.81 +1.0 4,178,776 + PfGW456L13_3714 0.81 +0.3 4,178,776 + PfGW456L13_3714 0.81 +0.2 4,178,777 - PfGW456L13_3714 0.81 -0.5 4,178,777 - PfGW456L13_3714 0.81 +0.5 4,178,777 - PfGW456L13_3714 0.81 -0.5 4,178,806 + PfGW456L13_3714 0.85 -1.6 4,178,807 - PfGW456L13_3714 0.85 -0.4 4,178,821 + PfGW456L13_3714 0.87 -0.6 4,178,822 - PfGW456L13_3714 0.87 -0.6 4,178,972 - +0.2 4,178,972 - +0.7 4,178,972 - -0.1 4,178,980 + -0.3 4,178,981 - -1.1 4,178,981 - -1.4 4,178,981 - +0.7 4,178,981 - -0.1 4,178,981 - +1.5 4,178,981 - -0.6 4,178,981 - +0.7 4,178,981 - -0.4 4,178,981 - -0.2 4,178,984 + +0.3 4,178,985 - +0.9 4,178,985 - -0.1 4,178,985 - -0.7 4,178,985 - +0.8 4,178,988 + +2.1 4,178,988 + -3.2 4,178,988 + -0.4 4,178,988 + +0.7 4,178,989 - +1.1
Or see this region's nucleotide sequence